Rorug01G0440700

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0012655
Physical Location & Seq
Forward (+)
53868572 .. 53869804
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0440700.1

Sequence Viewer

Length: 1233 bp
ATGCATCATCAATGGGAATGTCTTGATCTGGACGTGGTGTTTTTGGTTCTTGATAAGTTGTTGGAACCCATCGACCGTGTTAGTTTCGGGGTAGTTTGTAAAGAATGGGGTCGTCTTTCAAGAGCCTATAAGCGATGGTGTGAGCGAAAGGTGCTTCCCATGCTTCTAGTCCCTAGCGACTACGATGAATCACGTCAGGAATGGCGTTATGGAAAGAAGAACAGACGACCAAAGCACCAAGGATTACTGTACAGCATTTTGGAACGAAGAATCTACAGCCATGTGCAGAGTCTTCTGCTCCCATCAGTAAGTAAACCAAGACGTGGATGTAGCAGATACTATCGTGGATGTGGTCATGGTTGGGTGGCCATGATAGACATGGATGAGTTTAGAAGGGAAGTGATTATAACTCTCGTCAACCCCTTCACAACTGCAATGTTGCAGCGTTTCCCTCCATTGGAAATCTATGGCTGGGGTATCCCAAAAGTTATCTTGTCCGAAGATCCGACTTTGAATCAAGACAATTATGTGGTTGTAGCTTTATCTGATCATGACTCCTTGGATTTCATCAAAGGAAGACAAGATTGGTATCATATGGAATGCAAACCGTACCTCGCAGAGTTTGAACATTGCAAATTTACTGATGCTATATTTTACAGGGGCCAAATCTATATGGCTGATAATTGTTGCGGAATAATTGCGGTGTTCGATTACAAAAGCAAACAACAAATGTACTTGGAAAAGTTATGCACACCATTTCAAAATTTATCACAACGAGCTGAACGAGCATATCTTGTGGAATCAATCAAGGGAGACTTGTTGTATATTTTAAGATTTACAACATTAAAGAGTTTAGACGAAGGCCATGTGACCGAGAATTTTAGGGTATATAAGATGGTGCTCAATGGATCCATTGTGGAGCATGTTGAGGTAAAGAGCATTGGAGACGAGGCTTTGTTTGTTGGTGACAGTCATTCAATATCTTTATTGGCTTCAAGCTCTTCAGGATCGTGTCAACCAAATTCGATTTACTTTACAGATGATTCGATAAATTTTTGCCTATATTTAGATAACTACGGCGGACTACAAGTCCTCGACAAGAATATTGAAGTACAAGTTGATATGGGCATCTTCCATCTAGAGGATGGAACTATTAGCCAACATTACCCAAAATATTCCTTTGACGGTACGCTGCTACCACCCGCTTTTTGGATTATACCACCGGCCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

410

Amino Acids

47.59

Weight (kDa)

6.02

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 108 - 355 1.4e-40 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012655)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g32300 FvH4_7g32320 FvH4_7g33380
malus_domestica MD01G1232000.v1.1 MD01G1232100.v1.1
prunus_persica Prupe.2G322600_v2.0.a1
pyrus_communis pycom01g24050
rosa_chinensis RchiOBHm_Chr1g0383351
rosa_laevigata RLG00000026110
rosa_multiflora Rmu_sc0007173.1_g000013
rosa_roxburghii Rroxscaffold_4G00277370
rosa_rugosa Rorug01G0440700
rosa_samantha Rh1AG466600 Rh1BG423900 Rh1BG424000 Rh1CG437100 Rh1DG456600 Rh1DG456700
rosa_wichuraiana Rw1G040590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 407
AccB7I CCANNNNNTGG 1 cut(s) 323
AciI CCGC 4 cut(s) 690, 701, 1080, 1203
AclWI GGATC 4 cut(s) 497, 903, 916, 1015
AcoI YGGCCR 2 cut(s) 366, 1224
AcsI RAATTY 5 cut(s) 635, 763, 877, 1021, 1051
AcuI CTGAAG 1 cut(s) 987
AfaI GTAC 5 cut(s) 251, 611, 734, 1113, 1189
AfiI CCNNNNNNNGG 4 cut(s) 323, 457, 1141, 1209
AgsI TTSAA 7 cut(s) 120, 514, 626, 761, 978, 996, 1109
AhdI GACNNNNNGTC 1 cut(s) 1088
AjiI CACGTC 3 cut(s) 34, 194, 323
AjuI GAANNNNNNNTTGG 2 cut(s) 568, 600
AluBI AGCT 3 cut(s) 539, 779, 999
AluI AGCT 3 cut(s) 539, 779, 999
Alw21I GWGCWC 1 cut(s) 903
Alw26I GTCTC 2 cut(s) 807, 939
AlwI GGATC 4 cut(s) 497, 903, 916, 1015
AoxI GGCC 4 cut(s) 366, 661, 862, 1224
ApeKI GCWGC 2 cut(s) 442, 1192
ApoI RAATTY 5 cut(s) 635, 763, 877, 1021, 1051
AspS9I GGNCC 1 cut(s) 661
AsuHPI GGTGA 1 cut(s) 977
BaeI ACNNNNGTAYC 2 cut(s) 328, 361
BalI TGGCCA 1 cut(s) 368
BamHI GGATCC 1 cut(s) 908
BbsI GAAGAC 2 cut(s) 284, 583
Bbv12I GWGCWC 1 cut(s) 903
BbvI GCAGC 2 cut(s) 454, 1179
BccI CCATC 6 cut(s) 77, 129, 310, 889, 1139, 1143
BceAI ACGGC 2 cut(s) 1093, 1211
BciVI GTATCC 1 cut(s) 488
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 2 cut(s) 807, 939
BfaI CTAG 3 cut(s) 167, 174, 1139
BfmI CTRYAG 1 cut(s) 274
BfuI GTATCC 1 cut(s) 488
BisI GCNGC 2 cut(s) 443, 1193
BlsI GCNGC 2 cut(s) 444, 1194
BmeRI GACNNNNNGTC 1 cut(s) 1088
BmgBI CACGTC 3 cut(s) 34, 194, 323
BmgT120I GGNCC 1 cut(s) 661
BmiI GGNNCC 3 cut(s) 66, 662, 910
BmsI GCATC 3 cut(s) 13, 634, 1137
BpiI GAAGAC 2 cut(s) 284, 583
BsaBI GATNNNNATC 1 cut(s) 588
BsaJI CCNNGG 2 cut(s) 238, 558
Bsc4I CCNNNNNNNGG 4 cut(s) 323, 457, 1141, 1209
Bse118I RCCGGY 1 cut(s) 1222
Bse3DI GCAATG 2 cut(s) 441, 628
Bse8I GATNNNNATC 1 cut(s) 588
BseDI CCNNGG 2 cut(s) 238, 558
BseGI GGATG 4 cut(s) 332, 353, 388, 1150
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 4 cut(s) 323, 457, 1141, 1209
BseMI GCAATG 2 cut(s) 441, 628
BseX3I CGGCCG 1 cut(s) 1224
BseXI GCAGC 2 cut(s) 454, 1179
BseYI CCCAGC 1 cut(s) 471
BsgI GTGCAG 1 cut(s) 305
Bsh1285I CGRYCG 2 cut(s) 76, 1227
BshFI GGCC 4 cut(s) 368, 663, 864, 1226
BsiEI CGRYCG 2 cut(s) 76, 1227
BsiHKAI GWGCWC 1 cut(s) 903
BsiSI CCGG 1 cut(s) 1223
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 4 cut(s) 323, 457, 1141, 1209
BsmAI GTCTC 2 cut(s) 807, 939
BsmBI CGTCTC 1 cut(s) 939
BsmFI GGGAC 1 cut(s) 155
BsmI GAATGC 1 cut(s) 605
BsnI GGCC 4 cut(s) 368, 663, 864, 1226
Bsp1286I GDGCHC 1 cut(s) 903
Bsp1407I TGTACA 1 cut(s) 249
Bsp143I GATC 5 cut(s) 25, 502, 547, 908, 1007
BspACI CCGC 4 cut(s) 690, 701, 1080, 1203
BspANI GGCC 4 cut(s) 368, 663, 864, 1226
BspHI TCATGA 1 cut(s) 550
BspLI GGNNCC 3 cut(s) 66, 662, 910
BspPI GGATC 4 cut(s) 497, 903, 916, 1015
BspQI GCTCTTC 1 cut(s) 1006
BsrDI GCAATG 2 cut(s) 441, 628
BsrFI RCCGGY 1 cut(s) 1222
BsrGI TGTACA 1 cut(s) 249
BssAI RCCGGY 1 cut(s) 1222
BssECI CCNNGG 2 cut(s) 238, 558
BssMI GATC 5 cut(s) 25, 502, 547, 908, 1007
BssT1I CCWWGG 2 cut(s) 238, 558
Bst4CI ACNGT 5 cut(s) 77, 249, 609, 971, 1187
Bst6I CTCTTC 1 cut(s) 1006
BstAUI TGTACA 1 cut(s) 249
BstF5I GGATG 4 cut(s) 332, 353, 388, 1150
BstKTI GATC 5 cut(s) 28, 505, 550, 911, 1010
BstMAI GTCTC 2 cut(s) 807, 939
BstMBI GATC 5 cut(s) 25, 502, 547, 908, 1007
BstMCI CGRYCG 2 cut(s) 76, 1227
BstMWI GCNNNNNNNGC 3 cut(s) 151, 160, 785
BstNSI RCATGY 1 cut(s) 926
BstSFI CTRYAG 1 cut(s) 274
BstV1I GCAGC 2 cut(s) 454, 1179
BstV2I GAAGAC 2 cut(s) 284, 583
BstX2I RGATCY 2 cut(s) 502, 908
BstYI RGATCY 2 cut(s) 502, 908
BstZI CGGCCG 1 cut(s) 1224
BsuI GTATCC 1 cut(s) 488
BsuRI GGCC 4 cut(s) 368, 663, 864, 1226
BtgZI GCGATG 1 cut(s) 148
BtrI CACGTC 3 cut(s) 34, 194, 323
BtsCI GGATG 4 cut(s) 332, 353, 388, 1150
CciI TCATGA 1 cut(s) 550
Cfr10I RCCGGY 1 cut(s) 1222
Cfr13I GGNCC 1 cut(s) 661
Csp6I GTAC 5 cut(s) 250, 610, 733, 1112, 1188
CviAII CATG 8 cut(s) 160, 281, 356, 370, 379, 551, 866, 923
CviQI GTAC 5 cut(s) 250, 610, 733, 1112, 1188
DpnI GATC 5 cut(s) 27, 504, 549, 910, 1009
DpnII GATC 5 cut(s) 25, 502, 547, 908, 1007
DriI GACNNNNNGTC 1 cut(s) 1088
EaeI YGGCCR 2 cut(s) 366, 1224
EagI CGGCCG 1 cut(s) 1224
Eam1104I CTCTTC 1 cut(s) 1006
Eam1105I GACNNNNNGTC 1 cut(s) 1088
EarI CTCTTC 1 cut(s) 1006
EciI GGCGGA 1 cut(s) 1095
EclXI CGGCCG 1 cut(s) 1224
Eco130I CCWWGG 2 cut(s) 238, 558
Eco52I CGGCCG 1 cut(s) 1224
Eco57I CTGAAG 1 cut(s) 987
EcoT14I CCWWGG 2 cut(s) 238, 558
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 238, 558
Esp3I CGTCTC 1 cut(s) 939
FaeI CATG 8 cut(s) 163, 284, 359, 373, 382, 554, 869, 926
FalI AAGNNNNNCTT 2 cut(s) 800, 832
FaqI GGGAC 1 cut(s) 155
FatI CATG 8 cut(s) 159, 280, 355, 369, 378, 550, 865, 922
FauI CCCGC 1 cut(s) 1210
FauNDI CATATG 1 cut(s) 594
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 2 cut(s) 443, 1193
FokI GGATG 4 cut(s) 339, 360, 395, 1157
Fsp4HI GCNGC 2 cut(s) 443, 1193
FspBI CTAG 3 cut(s) 167, 174, 1139
GluI GCNGC 2 cut(s) 443, 1193
GsaI CCCAGC 1 cut(s) 475
HaeIII GGCC 4 cut(s) 368, 663, 864, 1226
HapII CCGG 1 cut(s) 1223
Hin1II CATG 8 cut(s) 163, 284, 359, 373, 382, 554, 869, 926
HincII GTYRAC 2 cut(s) 418, 1016
HindII GTYRAC 2 cut(s) 418, 1016
HinfI GANTC 7 cut(s) 188, 270, 289, 514, 554, 800, 1043
HpaII CCGG 1 cut(s) 1223
HphI GGTGA 1 cut(s) 977
Hpy166II GTNNAC 3 cut(s) 314, 418, 1016
Hpy188I TCNGA 3 cut(s) 499, 507, 547
Hpy188III TCNNGA 9 cut(s) 23, 29, 50, 120, 197, 518, 551, 1005, 1139
Hpy8I GTNNAC 3 cut(s) 314, 418, 1016
HpyAV CCTTC 3 cut(s) 387, 433, 854
HpyCH4III ACNGT 5 cut(s) 77, 249, 609, 971, 1187
HpyCH4IV ACGT 3 cut(s) 33, 193, 322
HpyCH4V TGCA 7 cut(s) 4, 286, 434, 442, 603, 633, 750
HpyF10VI GCNNNNNNNGC 3 cut(s) 151, 160, 785
HpySE526I ACGT 3 cut(s) 33, 193, 322
Hsp92II CATG 8 cut(s) 163, 284, 359, 373, 382, 554, 869, 926
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 5 cut(s) 25, 502, 547, 908, 1007
LguI GCTCTTC 1 cut(s) 1006
LmnI GCTCC 2 cut(s) 303, 919
LpnPI CCDG 5 cut(s) 14, 182, 457, 643, 990
Lsp1109I GCAGC 2 cut(s) 454, 1179
LweI GCATC 3 cut(s) 13, 634, 1137
MaeI CTAG 3 cut(s) 167, 174, 1139
MaeII ACGT 3 cut(s) 33, 193, 322
MaeIII GTNAC 2 cut(s) 868, 965
MalI GATC 5 cut(s) 27, 504, 549, 910, 1009
MboI GATC 5 cut(s) 25, 502, 547, 908, 1007
MboII GAAGA 7 cut(s) 229, 279, 284, 512, 588, 993, 1123
MflI RGATCY 2 cut(s) 502, 908
MhlI GDGCHC 1 cut(s) 903
MlsI TGGCCA 1 cut(s) 368
MluCI AATT 8 cut(s) 523, 635, 682, 696, 763, 877, 1021, 1051
MluNI TGGCCA 1 cut(s) 368
MlyI GAGTC 2 cut(s) 298, 548
MmeI TCCRAC 2 cut(s) 42, 530
MnlI CCTC 6 cut(s) 462, 623, 922, 943, 1103, 1135
Mox20I TGGCCA 1 cut(s) 368
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 368
MseI TTAA 3 cut(s) 830, 845, 1231
Msp20I TGGCCA 1 cut(s) 368
MspI CCGG 1 cut(s) 1223
Mva1269I GAATGC 1 cut(s) 605
MwoI GCNNNNNNNGC 3 cut(s) 151, 160, 785
NdeI CATATG 1 cut(s) 594
NdeII GATC 5 cut(s) 25, 502, 547, 908, 1007
NlaIII CATG 8 cut(s) 163, 284, 359, 373, 382, 554, 869, 926
NlaIV GGNNCC 3 cut(s) 66, 662, 910
NmuCI GTSAC 2 cut(s) 868, 965
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 926
PagI TCATGA 1 cut(s) 550
PciSI GCTCTTC 1 cut(s) 1006
PcsI WCGNNNNNNNCGW 1 cut(s) 781
PctI GAATGC 1 cut(s) 605
PfeI GAWTC 5 cut(s) 188, 270, 514, 800, 1043
PflMI CCANNNNNTGG 1 cut(s) 323
PkrI GCNGC 2 cut(s) 444, 1194
PleI GAGTC 2 cut(s) 297, 548
PpsI GAGTC 2 cut(s) 297, 548
PsiI TTATAA 1 cut(s) 407
PspFI CCCAGC 1 cut(s) 471
PspN4I GGNNCC 3 cut(s) 66, 662, 910
PspPI GGNCC 1 cut(s) 661
PsuI RGATCY 2 cut(s) 502, 908
RsaI GTAC 5 cut(s) 251, 611, 734, 1113, 1189
RsaNI GTAC 5 cut(s) 250, 610, 733, 1112, 1188
SapI GCTCTTC 1 cut(s) 1006
SaqAI TTAA 3 cut(s) 830, 845, 1231
SatI GCNGC 2 cut(s) 443, 1193
Sau3AI GATC 5 cut(s) 25, 502, 547, 908, 1007
Sau96I GGNCC 1 cut(s) 661
SchI GAGTC 2 cut(s) 298, 548
SduI GDGCHC 1 cut(s) 903
SetI ASST 9 cut(s) 36, 153, 196, 325, 541, 615, 781, 933, 1001
SfaNI GCATC 3 cut(s) 13, 634, 1137
SfcI CTRYAG 1 cut(s) 274
Sse9I AATT 8 cut(s) 523, 635, 682, 696, 763, 877, 1021, 1051
SsiI CCGC 4 cut(s) 690, 701, 1080, 1203
SspI AATATT 2 cut(s) 1105, 1175
SspMI CTAG 3 cut(s) 167, 174, 1139
StyI CCWWGG 2 cut(s) 238, 558
TaaI ACNGT 5 cut(s) 77, 249, 609, 971, 1187
TaiI ACGT 3 cut(s) 36, 196, 325
TaqI TCGA 5 cut(s) 72, 708, 1025, 1046, 1095
TaqII GACCGA 1 cut(s) 887
TasI AATT 8 cut(s) 523, 635, 682, 696, 763, 877, 1021, 1051
TatI WGTACW 3 cut(s) 249, 732, 1111
TfiI GAWTC 5 cut(s) 188, 270, 514, 800, 1043
Tru1I TTAA 3 cut(s) 830, 845, 1231
Tru9I TTAA 3 cut(s) 830, 845, 1231
TseFI GTSAC 2 cut(s) 868, 965
TseI GCWGC 2 cut(s) 442, 1192
Tsp45I GTSAC 2 cut(s) 868, 965
TspDTI ATGAA 2 cut(s) 201, 556
Van91I CCANNNNNTGG 1 cut(s) 323
XapI RAATTY 5 cut(s) 635, 763, 877, 1021, 1051
XbaI TCTAGA 1 cut(s) 1138
XceI RCATGY 1 cut(s) 926
XcmI CCANNNNNNNNNTGG 3 cut(s) 376, 1142, 1206
XspI CTAG 3 cut(s) 167, 174, 1139
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.