Rh1BG423900

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0012655
Physical Location & Seq
Reverse (-)
54279721 .. 54281869
2149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG423900.1

Sequence Viewer

Length: 1422 bp
ATGCAGAACCTCAACCCAGTTCATGAGTCGAGAGAAGATGGTCCCTCTGAAGAACATGAAAGCATCCACCAAAAGAACTCACCTGAACAGATAACACGATCTAAGGAGCCCCACAGCGACCAGCATCCTAATCAGCCTCCCAAGCAAGATGAAGAGGAAATAAGAAAACAAACCATATTCTTCAGAATCTGGTTTGGCTTGAAAACGAGAGAACTCGTAAAGATTGCTATTGGTTCTTTTGCAGCAGCTTTCTCTGGCATATCAAAGCCTGTCTTTGGGTATTACATTATAACAATAGGAGTAGCATACTACCACCCAGATGCTAAAAGAAAAGTCTCAAAATATTCAATCACCTTCGCTCTAATTGGATTCATTTCATTGTTCTCTCACACCTTGCAACATTACTTCTTTGGAATGGTTGGAGAGAAGGCCATGACAAACCTGAGACGTGCTCTCTATTCAGGTGTGCTACGCAATGAAATTGGATGGTATGAGAACCCTGAGAATGGCATTGGACAGCTCACCTCAAGGATCATCAATGACACTTCAATGGTTAAACTGGTAATTGCTGACCGGATGTCTGTCATTGTTCAGTGCATCTCCTCCATACTGATTGCAACCATTGTGAGCATGGTTGTCAACTGGAGAATGGGGTTGGTAGCTTGGGCTGTGATGCCTTGCCACTTCATTGGCGGTCTCATTCAAGCCAAGTCTGCCAAGGGTTTTGCAGGAGACTCAGCTGCTGCACATAATGAACTTGTTTCTCTTGCTTCTGAGTCTGCACAAAACATAAGAACCGTTGCGTCGTTTTGCCATGAAGCTCATATACTCAAAAAAGCCGAAATATCTCTGGAAACACCCAAGAGAATGAGCAGGAAAGAAAGTATCAAGTATGGCATAATTCAGGGAGTTTCTCTTTGCTTATGGAACATTGCACATGCTGTGGCATTGTGGTACACAACAGTTTTGGTTCATAAAAATCAATCGAGCTTCAAAGATGGCATAAGATCATACCAGATTTTCTCTCTCACAGTACCTTCAATCACAGAATTGTGGACATTGATTCCCACTGTCATTTCTGCCATCAATGTACTCACTCCTGCATTCGAGACCCTTGACCGCAAAACTGAAATAGATCCATCTACACCAGAAACTTCAAATCGGGACAGAATCAAAGGGAACATTGAATTTCAAAACGTTGAGTTTAATTACCCTTTGAGACCGGAAGTAACTATCCTGAACAACTTCAGTGTACAAATTGAAGCTGTTGCACATAGGCTTTCCACAATAATAAGGTCGGATATCATTGTTGTCATGGACAAAGGTGAGATTGTGGAGATGGGATCCCACTCAACCCTAATAACAGCATCTGAGGGAGTTTATTCAAGATTATATCAGATACAGAGCATGGGAGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

473

Amino Acids

53.12

Weight (kDa)

7.29

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 77 - 339 1.6e-46 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012655)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g32300 FvH4_7g32320 FvH4_7g33380
malus_domestica MD01G1232000.v1.1 MD01G1232100.v1.1
prunus_persica Prupe.2G322600_v2.0.a1
pyrus_communis pycom01g24050
rosa_chinensis RchiOBHm_Chr1g0383351
rosa_laevigata RLG00000026110
rosa_multiflora Rmu_sc0007173.1_g000013
rosa_roxburghii Rroxscaffold_4G00277370
rosa_rugosa Rorug01G0440700
rosa_samantha Rh1AG466600 Rh1BG423900 Rh1BG424000 Rh1CG437100 Rh1DG456600 Rh1DG456700
rosa_wichuraiana Rw1G040590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 290
AciI CCGC 2 cut(s) 693, 1120
AclI AACGTT 1 cut(s) 1197
AclWI GGATC 4 cut(s) 539, 1130, 1338, 1351
AcsI RAATTY 1 cut(s) 1187
AcuI CTGAAG 3 cut(s) 69, 166, 1231
AfaI GTAC 4 cut(s) 956, 1035, 1092, 1254
AfiI CCNNNNNNNGG 2 cut(s) 275, 506
AhdI GACNNNNNGTC 1 cut(s) 577
AjiI CACGTC 1 cut(s) 449
AluBI AGCT 7 cut(s) 248, 520, 662, 740, 821, 990, 1265
AluI AGCT 7 cut(s) 248, 520, 662, 740, 821, 990, 1265
Alw21I GWGCWC 1 cut(s) 454
Alw26I GTCTC 6 cut(s) 340, 439, 701, 726, 1103, 1213
AlwI GGATC 4 cut(s) 539, 1130, 1338, 1351
AlwNI CAGNNNCTG 3 cut(s) 189, 743, 1370
AoxI GGCC 1 cut(s) 429
ApeKI GCWGC 4 cut(s) 242, 245, 740, 743
ApoI RAATTY 1 cut(s) 1187
Asp700I GAANNNNTTC 1 cut(s) 1244
AspS9I GGNCC 1 cut(s) 41
AsuHPI GGTGA 4 cut(s) 72, 343, 514, 1337
AvaII GGWCC 1 cut(s) 41
BamHI GGATCC 1 cut(s) 1343
BanII GRGCYC 1 cut(s) 111
BarI GAAGNNNNNNTAC 2 cut(s) 810, 842
Bbv12I GWGCWC 1 cut(s) 454
BbvI GCAGC 4 cut(s) 254, 257, 727, 730
BccI CCATC 6 cut(s) 32, 480, 992, 1091, 1147, 1333
BcoDI GTCTC 6 cut(s) 340, 439, 701, 726, 1103, 1213
BisI GCNGC 4 cut(s) 243, 246, 741, 744
BlsI GCNGC 4 cut(s) 244, 247, 742, 745
Bme18I GGWCC 1 cut(s) 41
BmeRI GACNNNNNGTC 1 cut(s) 577
BmgBI CACGTC 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 3 cut(s) 43, 108, 1345
BmrI ACTGGG 1 cut(s) 11
BmsI GCATC 6 cut(s) 72, 133, 310, 606, 663, 1376
BmuI ACTGGG 1 cut(s) 11
BplI GAGNNNNNCTC 2 cut(s) 436, 468
BpmI CTGGAG 1 cut(s) 664
BpuEI CTTGAG 1 cut(s) 511
BsaI GGTCTC 3 cut(s) 701, 1103, 1213
BsaJI CCNNGG 1 cut(s) 717
BsaWI WCCGGW 2 cut(s) 573, 1222
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 506
Bse1I ACTGG 3 cut(s) 17, 564, 647
Bse3DI GCAATG 2 cut(s) 481, 930
BseDI CCNNGG 1 cut(s) 717
BseGI GGATG 4 cut(s) 63, 124, 491, 582
BseLI CCNNNNNNNGG 2 cut(s) 275, 506
BseMI GCAATG 2 cut(s) 481, 930
BseMII CTCAG 5 cut(s) 434, 492, 750, 765, 1362
BseNI ACTGG 3 cut(s) 17, 564, 647
BseRI GAGGAG 1 cut(s) 592
BseXI GCAGC 4 cut(s) 254, 257, 727, 730
BsgI GTGCAG 2 cut(s) 729, 765
BshFI GGCC 1 cut(s) 431
BsiHKAI GWGCWC 1 cut(s) 454
BsiSI CCGG 2 cut(s) 574, 1223
BslFI GGGAC 2 cut(s) 27, 1178
BslI CCNNNNNNNGG 2 cut(s) 275, 506
BsmAI GTCTC 6 cut(s) 340, 439, 701, 726, 1103, 1213
BsmBI CGTCTC 1 cut(s) 439
BsmFI GGGAC 2 cut(s) 27, 1178
BsmI GAATGC 1 cut(s) 1103
BsnI GGCC 1 cut(s) 431
Bso31I GGTCTC 3 cut(s) 701, 1103, 1213
Bsp1286I GDGCHC 2 cut(s) 111, 454
Bsp1407I TGTACA 1 cut(s) 1252
Bsp143I GATC 5 cut(s) 98, 531, 1007, 1135, 1343
BspACI CCGC 2 cut(s) 693, 1120
BspANI GGCC 1 cut(s) 431
BspCNI CTCAG 5 cut(s) 435, 493, 749, 766, 1363
BspHI TCATGA 1 cut(s) 22
BspLI GGNNCC 3 cut(s) 43, 108, 1345
BspPI GGATC 4 cut(s) 539, 1130, 1338, 1351
BspTNI GGTCTC 3 cut(s) 701, 1103, 1213
BsrDI GCAATG 2 cut(s) 481, 930
BsrGI TGTACA 1 cut(s) 1252
BsrI ACTGG 3 cut(s) 17, 564, 647
BssECI CCNNGG 1 cut(s) 717
BssMI GATC 5 cut(s) 98, 531, 1007, 1135, 1343
BssT1I CCWWGG 1 cut(s) 717
Bst4CI ACNGT 4 cut(s) 799, 964, 1033, 1072
Bst6I CTCTTC 2 cut(s) 147, 1410
BstAUI TGTACA 1 cut(s) 1252
BstDEI CTNAG 6 cut(s) 102, 443, 501, 736, 774, 1371
BstF5I GGATG 4 cut(s) 63, 124, 491, 582
BstKTI GATC 5 cut(s) 101, 534, 1010, 1138, 1346
BstMAI GTCTC 6 cut(s) 340, 439, 701, 726, 1103, 1213
BstMBI GATC 5 cut(s) 98, 531, 1007, 1135, 1343
BstMWI GCNNNNNNNGC 2 cut(s) 142, 713
BstNSI RCATGY 1 cut(s) 941
BstV1I GCAGC 4 cut(s) 254, 257, 727, 730
BstX2I RGATCY 2 cut(s) 1135, 1343
BstXI CCANNNNNNTGG 1 cut(s) 689
BstYI RGATCY 2 cut(s) 1135, 1343
BsuRI GGCC 1 cut(s) 431
BtrI CACGTC 1 cut(s) 449
BtsCI GGATG 4 cut(s) 63, 124, 491, 582
BtsIMutI CAGTG 3 cut(s) 599, 1068, 1255
CaiI CAGNNNCTG 3 cut(s) 189, 743, 1370
CciI TCATGA 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 41
CseI GACGC 1 cut(s) 792
Csp6I GTAC 4 cut(s) 955, 1034, 1091, 1253
CviAII CATG 8 cut(s) 23, 56, 433, 631, 815, 938, 1315, 1408
CviQI GTAC 4 cut(s) 955, 1034, 1091, 1253
DdeI CTNAG 6 cut(s) 102, 443, 501, 736, 774, 1371
DpnI GATC 5 cut(s) 100, 533, 1009, 1137, 1345
DpnII GATC 5 cut(s) 98, 531, 1007, 1135, 1343
DriI GACNNNNNGTC 1 cut(s) 577
Eam1104I CTCTTC 2 cut(s) 147, 1410
Eam1105I GACNNNNNGTC 1 cut(s) 577
EarI CTCTTC 2 cut(s) 147, 1410
Eco130I CCWWGG 1 cut(s) 717
Eco24I GRGCYC 1 cut(s) 111
Eco31I GGTCTC 3 cut(s) 701, 1103, 1213
Eco32I GATATC 1 cut(s) 1303
Eco47I GGWCC 1 cut(s) 41
Eco57I CTGAAG 3 cut(s) 69, 166, 1231
EcoRV GATATC 1 cut(s) 1303
EcoT14I CCWWGG 1 cut(s) 717
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 717
Esp3I CGTCTC 1 cut(s) 439
FaeI CATG 8 cut(s) 26, 59, 436, 634, 818, 941, 1318, 1411
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FaqI GGGAC 2 cut(s) 27, 1178
FatI CATG 8 cut(s) 22, 55, 432, 630, 814, 937, 1314, 1407
Fnu4HI GCNGC 4 cut(s) 243, 246, 741, 744
FokI GGATG 4 cut(s) 50, 111, 498, 589
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 4 cut(s) 243, 246, 741, 744
GluI GCNGC 4 cut(s) 243, 246, 741, 744
GsuI CTGGAG 1 cut(s) 664
HaeIII GGCC 1 cut(s) 431
HapII CCGG 2 cut(s) 574, 1223
HgaI GACGC 1 cut(s) 792
Hin1II CATG 8 cut(s) 26, 59, 436, 634, 818, 941, 1318, 1411
HincII GTYRAC 1 cut(s) 640
HindII GTYRAC 1 cut(s) 640
HinfI GANTC 7 cut(s) 26, 186, 369, 734, 776, 1063, 1170
HpaII CCGG 2 cut(s) 574, 1223
HphI GGTGA 4 cut(s) 72, 343, 514, 1337
Hpy166II GTNNAC 4 cut(s) 640, 957, 1056, 1253
Hpy188I TCNGA 6 cut(s) 49, 185, 775, 1300, 1372, 1398
Hpy188III TCNNGA 7 cut(s) 23, 30, 851, 1108, 1163, 1237, 1386
Hpy8I GTNNAC 4 cut(s) 640, 957, 1056, 1253
Hpy99I CGWCG 1 cut(s) 808
HpyAV CCTTC 3 cut(s) 364, 421, 1047
HpyCH4III ACNGT 4 cut(s) 799, 964, 1033, 1072
HpyCH4IV ACGT 2 cut(s) 448, 1197
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 713
HpyF3I CTNAG 6 cut(s) 102, 443, 501, 736, 774, 1371
HpySE526I ACGT 2 cut(s) 448, 1197
Hsp92II CATG 8 cut(s) 26, 59, 436, 634, 818, 941, 1318, 1411
Kzo9I GATC 5 cut(s) 98, 531, 1007, 1135, 1343
LmnI GCTCC 1 cut(s) 106
Lsp1109I GCAGC 4 cut(s) 254, 257, 727, 730
LweI GCATC 6 cut(s) 72, 133, 310, 606, 663, 1376
MaeII ACGT 2 cut(s) 448, 1197
MaeIII GTNAC 1 cut(s) 1228
MalI GATC 5 cut(s) 100, 533, 1009, 1137, 1345
MboI GATC 5 cut(s) 98, 531, 1007, 1135, 1343
MboII GAAGA 4 cut(s) 47, 62, 164, 172
MflI RGATCY 2 cut(s) 1135, 1343
MhlI GDGCHC 2 cut(s) 111, 454
MluCI AATT 8 cut(s) 363, 480, 564, 900, 1049, 1187, 1207, 1257
MlyI GAGTC 3 cut(s) 35, 728, 785
MmeI TCCRAC 2 cut(s) 400, 1278
MnlI CCTC 7 cut(s) 20, 55, 147, 148, 535, 613, 1366
MroXI GAANNNNTTC 1 cut(s) 1244
MseI TTAA 2 cut(s) 555, 1206
MslI CAYNNNNRTG 2 cut(s) 318, 548
MspA1I CMGCKG 1 cut(s) 740
MspI CCGG 2 cut(s) 574, 1223
Mva1269I GAATGC 1 cut(s) 1103
MwoI GCNNNNNNNGC 2 cut(s) 142, 713
NdeII GATC 5 cut(s) 98, 531, 1007, 1135, 1343
NlaIII CATG 8 cut(s) 26, 59, 436, 634, 818, 941, 1318, 1411
NlaIV GGNNCC 3 cut(s) 43, 108, 1345
NspI RCATGY 1 cut(s) 941
PagI TCATGA 1 cut(s) 22
PctI GAATGC 1 cut(s) 1103
PdmI GAANNNNTTC 1 cut(s) 1244
PfeI GAWTC 4 cut(s) 186, 369, 1063, 1170
PkrI GCNGC 4 cut(s) 244, 247, 742, 745
PleI GAGTC 3 cut(s) 34, 728, 784
PpsI GAGTC 3 cut(s) 34, 728, 784
PsiI TTATAA 1 cut(s) 290
Psp1406I AACGTT 1 cut(s) 1197
PspN4I GGNNCC 3 cut(s) 43, 108, 1345
PspPI GGNCC 1 cut(s) 41
PstNI CAGNNNCTG 3 cut(s) 189, 743, 1370
PsuI RGATCY 2 cut(s) 1135, 1343
PvuII CAGCTG 1 cut(s) 740
RsaI GTAC 4 cut(s) 956, 1035, 1092, 1254
RsaNI GTAC 4 cut(s) 955, 1034, 1091, 1253
RseI CAYNNNNRTG 2 cut(s) 318, 548
SaqAI TTAA 2 cut(s) 555, 1206
SatI GCNGC 4 cut(s) 243, 246, 741, 744
Sau3AI GATC 5 cut(s) 98, 531, 1007, 1135, 1343
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 3 cut(s) 35, 728, 785
SduI GDGCHC 2 cut(s) 111, 454
SfaNI GCATC 6 cut(s) 72, 133, 310, 606, 663, 1376
SinI GGWCC 1 cut(s) 41
SmiMI CAYNNNNRTG 2 cut(s) 318, 548
SmlI CTYRAG 1 cut(s) 526
SmoI CTYRAG 1 cut(s) 526
Sse9I AATT 8 cut(s) 363, 480, 564, 900, 1049, 1187, 1207, 1257
SsiI CCGC 2 cut(s) 693, 1120
SspI AATATT 1 cut(s) 344
StyI CCWWGG 1 cut(s) 717
TaaI ACNGT 4 cut(s) 799, 964, 1033, 1072
TaiI ACGT 2 cut(s) 451, 1200
TaqI TCGA 3 cut(s) 29, 986, 1107
TasI AATT 8 cut(s) 363, 480, 564, 900, 1049, 1187, 1207, 1257
TatI WGTACW 2 cut(s) 1090, 1252
TfiI GAWTC 4 cut(s) 186, 369, 1063, 1170
Tru1I TTAA 2 cut(s) 555, 1206
Tru9I TTAA 2 cut(s) 555, 1206
TscAI CASTG 3 cut(s) 599, 1075, 1255
TseI GCWGC 4 cut(s) 242, 245, 740, 743
TspRI CASTG 3 cut(s) 599, 1075, 1255
VpaK11BI GGWCC 1 cut(s) 41
XapI RAATTY 1 cut(s) 1187
XceI RCATGY 1 cut(s) 941
XcmI CCANNNNNNNNNTGG 1 cut(s) 628
XmnI GAANNNNTTC 1 cut(s) 1244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.