pycom01g24050

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0012655
Physical Location & Seq
Reverse (-)
21117105 .. 21121889
4785 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g24050.1

Sequence Viewer

Length: 3729 bp
ATGCAGATGGGGAAACAGAAAGGAGCAACCGTGGAGGACGAGAAGGCGGAGCTTGTCATAGCCGAGACTCTGGGATTCAGTAAGCTGCTGAGCTATGCGGACGCGTTGGATTGGACTATGATGGTATTGGGGACGTTGGGTTCTGTTGTCCATGGTATGGCTTTTCCAGTTGGATATCTTTTGCTCGGAAAAGCTCTCAATGCGTTTGGAAGCAATATCAACGACACTGAAGGCACGGTTAAAGCCCTGAAGAAGGTTATTCCGTACGTGTGGTACATGGCCTTCGCCACATTTCCAGCTGGAATAGTTGAAATCGGGTGCTGGATGTACTCGAGTGAAAGGCAAGTGGCGCGGTTAAGACTGGCCTATCTACGAGCAGTCCTTAGCCAGGAGATTGGGGCTTTTGATACAGATTTAACCAGTGGAAAAATCATCAGCGGGATCAGTAACCACATGAGTATCATACAAGATGCAATTGGAGAGAAGATGGGGCATTTTCTGTCATGCTTTGCAACTTTCTTTTCTGGAATTTTGATTGCTGCCTTATGCTGTTGGGAAGTAGCACTGCTGACCTTGGTGGTTGTTCCTTTGATTCTTGTAATCGGAGGCACTTACACAAAGAAAATGAACTCCATCTCCGCCACTAGAATGCTTTACCAGTCAGAAGCTACGTCTATGGTAGAACAGACAATATCTCAAATCAAAACCGTATATGCATTTGTTGGAGAATGTTCTGCGATCAAGTCTTTTTCAGATTGCATGGCAAAACAGTATTTCCTAAGCAAAGGAGAGGCTCTGATAAAGGGAGTTGGAACAGGAATGCTTCAATCTGTGTCTTTCGGTTCTTGGGCTCTCATCGTTTGGGTTGGTGCTGTTGTAGTCACAGCCAAGAGAGCAAGCGGGGGAGACATTCTAGCAGCTGTGATGAGCATTCTATTTGGAGCTATATCACTGACTTATGCTGCACCGGACATGCAAATCTTCAATCAGGCAACAGCTGCAGGAACTGCAGTTTTCCAAGTGATCAATAGAAAGCCGGTTATAAGCTACAATTCAGAAGGGAAGATACTTGAGGAGATTCATGGCAATATTGACATCCATGAAGTGCACTTTTCCTACCCGTCCAGGCCGGACAGAGCCATCCTTCAAGGGTTTTCATTGTCAATTCCAGCAGGAAAGACAGTAGCCTTTGTTGGCAGCAGTGGGTGTGGAAAGAGTACTATCATCTCCCTAGTTGCAAGATTCTATGATCCCTTAAAAGGAGAGATTCGGATCGACAACCATAACATCAAGGATCTTGACTTGAAGTTCCTGAGGAAAAACGTAGGAGCAGTTTCTCAAGAACCGGCACTGTTTGGAGGATCCATCAGTGACAACATGAAAGTTGGTAAGATGGATGCAGAAGATGAAGAGATCCAGAAAGCAGCAGTCATGGCTAATGCACAAACTTTCATATCCCAACTTCCAGACCAATACTCAACAGAGGTGGGACAAAGGGGAGTCCAGTTATCAGGAGGGCAAAAACAGAGAATCGCCATAGCAAGAGCAATTCTAAAAAATCCTCCAATTCTTCTGCTTGACGAGGCCACGAGTGCTCTTGATTCGGAGTCAGAAAAGGTGGTTCAAGATGCCCTTGACAAGGCTATGCAGGGAAGGACAGTCATCTTGATCGCACACAGGCTCTCAACTATTATCAATGCAGATATGATTGCTGTGGTAGAAAATGGACGAGTTTCAGAAACAGGGACGCACCACAGCTTGCTTGACAGCAGCAAATTCTACAATAACTTGTTTTCTATGCAGAACATCAACCCAGTACGCGACTCGAGAGAAACTAGTACCTCCGAAGAACCTACAAACACGCAACAACAGATTTCACTTGAAGAGATGGAACAAGACAAGGAACCTAGGGAGCCTGACAGCAATCTTAAGGAGTCTCCCAAGCATGAAGAACAGGAAAAAAGCAAAAGAGCTATATTCTTCAGGATCTGGTATGGCTTGCAAAAGGGAGACCTCGGAAGGATTGCTCTCGGTTCCTTCGCAGCAGCCCTCTCAGGCATATCAAAGCCTGTCTTTGGGTATTGCATTATAAGTATTGGAGTGAGATACGTTCAGCCAGACGCTAAGAGGCATGTTGAAAAATATTCAATCGCCTTCTCTCTAATAGGATTTCTTTCGTTGTTCTCTCACACCGTGCAACATTACTTGTTTGGAATAATTGGAGAGAAGGCCATGACAAACCTAAGACTCGCTCTCTATTCAGGTGTACTACGCAATGAAATCGGATGGTATGAGAAACCTGAGAATGGCATTGGTTTGCTTACTTCACGGATCATCAATGACACCTCGATGGTGAAGACCATAATCGCTGATCGTATGTCTGTTATCGTTCAGTGCATCTCCTCCATACTGATTGCAACAGTTGTCAGCATGTATGTTAACTGGAGAATGGGATTGGTAGCTTGGGCTGTGATGCCATGCCACTTCATTGGTGGTTTGGTTCAAGCCAAGTCTGCCAAAGGGTTTTCGGGTGATGCAGCTGCTACACATGCTGAACTTGTTACTCTTGCTTCTGAGTCTGCAACCAACATAAGAACTGTGGCATCCTTCTGTCACGAAGATCATATACTCAGAAAAGCCAGAATATCTCTAGAAAACCCCAAGAAGAGGTGCAGGAGAGAAAGTATCAAGTACGGCATAATTCAGGGTATTTCCCTTTGCTTATGGAACATTGCACATGCTGTTGCGTTGTGGTATACGACAGTTTTGGTTGGTAAAAATCAAGCAAGCTTTGAGAATGGCATAAGAGCGTACCAGATTTTCTCTCTCACAGTACCTTCAATTACAGAGTTATGGACACTGATTCCCACTGTCATCTCTGCCATCGGTGTGCTAACCCCTGCATTCCAAACCCTTGACCGCAAAACTGAAATCGAACCAGATACACCAGAAAGTTCAAATCCTGACAGAATTAAAGGGGATATCGAATTTCAAAATGTCAAGTTCAATTACCCTTTAAGACCGGAAGTAACTGTCCTGAACGATTTCAGTTTACAAATTGAAGCTGGAAGAAAGGTTGCTTTCGTTGGCCCAAGTGGAGCTGGAAAATCTTCCGTATTGGCCCTCCTGCTACGATTTTATGATCCAATGGAAGGAAGAATACTCATCGACGGAAAGGAGATAAGGGAATACAATTTGAGGTGGCTGAGGAGACAAATAGGACTAGTGCAACAAGAGCCTATTCTTTTTAGCTCCTCAATTAAAGCCAATATCTGCTATGGGACCGAGGAGGCTTCTGAAGCTGAAATTGTGGAGGTATCTAGGGAAGCAAACATAGATGAATTTATATGTAACTTGCCTGACGGATATGAAACTGTTGTTGGGGAGAAGGGCTGCCAACTTTCAGGAGGACAAAAGCAAAGAATAGCCATAGCTAGAACACTGCTAAAGAGGCCTGCAATTCTGCTCCTCGATGAAGCAACCAGTGCCCTTGATGCTGAATCTGAGCAGTCCGTGGTGAGTGCATTGGAAGCAATAAACTTGAGAAGTCTGTCAAAAACCACACAAATTACAATTGCACATAGGCTTTCCACAATAATACACTCCGATACCATTGTCGTCATGGATAAAGGCAAGATTGTGGAGACAGGTTCGCACTCAGCCCTGATAGCAGCATCAGAAGGAGTTTACTCAAGATTATATCAGCTGCAGAACTTGGGAGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1243

Amino Acids

136.0

Weight (kDa)

6.39

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 42 - 315 9.6e-43 ABC transporter transmembrane region
SMC_N PF02463 312 - 574 1.6e-06 RecF/RecN/SMC N terminal domain
ABC_tran PF00005 382 - 531 1e-33 ABC transporter
ABC_membrane PF00664 677 - 935 3.4e-45 ABC transporter transmembrane region
ABC_tran PF00005 1013 - 1162 2.3e-33 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012655)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g32300 FvH4_7g32320 FvH4_7g33380
malus_domestica MD01G1232000.v1.1 MD01G1232100.v1.1
prunus_persica Prupe.2G322600_v2.0.a1
pyrus_communis pycom01g24050
rosa_chinensis RchiOBHm_Chr1g0383351
rosa_laevigata RLG00000026110
rosa_multiflora Rmu_sc0007173.1_g000013
rosa_roxburghii Rroxscaffold_4G00277370
rosa_rugosa Rorug01G0440700
rosa_samantha Rh1AG466600 Rh1BG423900 Rh1BG424000 Rh1CG437100 Rh1DG456600 Rh1DG456700
rosa_wichuraiana Rw1G040590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1043, 2090
AccB7I CCANNNNNTGG 1 cut(s) 157
AccI GTMKAC 1 cut(s) 2756
AccII CGCG 3 cut(s) 104, 352, 1821
AciI CCGC 7 cut(s) 47, 98, 352, 438, 639, 900, 2920
AcsI RAATTY 4 cut(s) 528, 1775, 2987, 3341
AcuI CTGAAG 4 cut(s) 249, 269, 1966, 3318
AdeI CACNNNGTG 1 cut(s) 2194
AfiI CCNNNNNNNGG 9 cut(s) 157, 253, 388, 1259, 1639, 2075, 2306, 2667, 3152
AflII CTTAAG 1 cut(s) 1928
AflIII ACRYGT 2 cut(s) 102, 267
AhlI ACTAGT 2 cut(s) 1835, 3223
AjnI CCWGG 2 cut(s) 387, 1124
AjuI GAANNNNNNNTTGG 2 cut(s) 3363, 3395
AloI GAACNNNNNNTCC 4 cut(s) 124, 156, 620, 652
Alw21I GWGCWC 2 cut(s) 1110, 1597
Alw26I GTCTC 6 cut(s) 59, 900, 1941, 2004, 3205, 3638
Alw44I GTGCAC 1 cut(s) 1106
AlwNI CAGNNNCTG 2 cut(s) 1007, 1989
Ama87I CYCGRG 2 cut(s) 331, 1825
AoxI GGCC 8 cut(s) 279, 363, 1127, 1584, 2229, 3088, 3120, 3452
ApaLI GTGCAC 1 cut(s) 1106
ApoI RAATTY 4 cut(s) 528, 1775, 2987, 3341
Asp700I GAANNNNTTC 2 cut(s) 3044, 3109
AspA2I CCTAGG 1 cut(s) 1907
AspLEI GCGC 1 cut(s) 352
AspS9I GGNCC 3 cut(s) 3089, 3121, 3282
AsuHPI GGTGA 3 cut(s) 2365, 2543, 3529
AvaI CYCGRG 2 cut(s) 331, 1825
AvaII GGWCC 1 cut(s) 3282
AvrII CCTAGG 1 cut(s) 1907
AxyI CCTNAGG 1 cut(s) 1313
BaeGI GKGCMC 2 cut(s) 1110, 3490
BaeI ACNNNNGTAYC 4 cut(s) 442, 475, 3600, 3633
BamHI GGATCC 1 cut(s) 1361
BanII GRGCYC 1 cut(s) 853
BarI GAAGNNNNNNTAC 8 cut(s) 266, 298, 1050, 1082, 2610, 2642, 3144, 3176
BauI CACGAG 1 cut(s) 1588
BbsI GAAGAC 1 cut(s) 2363
Bbv12I GWGCWC 2 cut(s) 1110, 1597
BbvCI CCTCAGC 1 cut(s) 3206
BceAI ACGGC 1 cut(s) 2710
BcgI CGANNNNNNTGC 2 cut(s) 2263, 2297
BciT130I CCWGG 2 cut(s) 389, 1126
BclI TGATCA 1 cut(s) 1023
BcoDI GTCTC 6 cut(s) 59, 900, 1941, 2004, 3205, 3638
BcuI ACTAGT 2 cut(s) 1835, 3223
BfaI CTAG 9 cut(s) 645, 914, 1232, 1836, 1908, 2651, 3224, 3321, 3435
BfmI CTRYAG 3 cut(s) 999, 1008, 3707
BfrI CTTAAG 1 cut(s) 1928
BlnI CCTAGG 1 cut(s) 1907
BlpI GCTNAGC 1 cut(s) 89
BmcAI AGTACT 1 cut(s) 1219
Bme1390I CCNGG 2 cut(s) 389, 1126
Bme18I GGWCC 1 cut(s) 3282
BmeT110I CYCGRG 2 cut(s) 331, 1825
BmgT120I GGNCC 3 cut(s) 3089, 3121, 3282
BmiI GGNNCC 5 cut(s) 1363, 1905, 1914, 2035, 3283
BmrFI CCNGG 2 cut(s) 389, 1126
BmrI ACTGGG 1 cut(s) 1808
BmsI GCATC 9 cut(s) 460, 1387, 1618, 2406, 2463, 2524, 2612, 3484, 3683
BmuI ACTGGG 1 cut(s) 1808
BpiI GAAGAC 1 cut(s) 2363
BpmI CTGGAG 1 cut(s) 2464
Bpu10I CCTNAGC 3 cut(s) 383, 779, 3206
Bpu1102I GCTNAGC 1 cut(s) 89
BpuEI CTTGAG 4 cut(s) 1091, 1323, 3562, 3676
BsaAI YACGTR 1 cut(s) 268
BsaBI GATNNNNATC 1 cut(s) 1271
BsaI GGTCTC 1 cut(s) 2004
BsaJI CCNNGG 7 cut(s) 30, 151, 573, 1907, 2014, 3285, 3513
BsaWI WCCGGW 2 cut(s) 967, 3022
BsaXI ACNNNNNCTCC 6 cut(s) 15, 45, 620, 650, 2668, 2698
Bsc4I CCNNNNNNNGG 9 cut(s) 157, 253, 388, 1259, 1639, 2075, 2306, 2667, 3152
Bse118I RCCGGY 2 cut(s) 1036, 1345
Bse1I ACTGG 8 cut(s) 167, 366, 420, 658, 1504, 1814, 2447, 3483
Bse21I CCTNAGG 1 cut(s) 1313
Bse3DI GCAATG 2 cut(s) 2281, 2730
Bse8I GATNNNNATC 1 cut(s) 1271
BseBI CCWGG 2 cut(s) 389, 1126
BseDI CCNNGG 7 cut(s) 30, 151, 573, 1907, 2014, 3285, 3513
BseGI GGATG 6 cut(s) 330, 1095, 1140, 1402, 2291, 2603
BseJI GATNNNNATC 1 cut(s) 1271
BseLI CCNNNNNNNGG 9 cut(s) 157, 253, 388, 1259, 1639, 2075, 2306, 2667, 3152
BseMI GCAATG 2 cut(s) 2281, 2730
BseMII CTCAG 9 cut(s) 80, 1304, 2067, 2292, 2565, 2644, 3197, 3495, 3672
BseNI ACTGG 8 cut(s) 167, 366, 420, 658, 1504, 1814, 2447, 3483
BseRI GAGGAG 6 cut(s) 1088, 2392, 3223, 3244, 3302, 3458
BseSI GKGCMC 2 cut(s) 1110, 3490
BsgI GTGCAG 2 cut(s) 948, 2692
Bsh1236I CGCG 3 cut(s) 104, 352, 1821
BshFI GGCC 8 cut(s) 281, 365, 1129, 1586, 2231, 3090, 3122, 3454
BsiHKAI GWGCWC 2 cut(s) 1110, 1597
BsiHKCI CYCGRG 2 cut(s) 331, 1825
BsiSI CCGG 5 cut(s) 968, 1037, 1130, 1346, 3023
BsiWI CGTACG 1 cut(s) 264
BslFI GGGAC 4 cut(s) 145, 1503, 1759, 3295
BslI CCNNNNNNNGG 9 cut(s) 157, 253, 388, 1259, 1639, 2075, 2306, 2667, 3152
BsmAI GTCTC 6 cut(s) 59, 900, 1941, 2004, 3205, 3638
BsmFI GGGAC 4 cut(s) 145, 1503, 1759, 3295
BsmI GAATGC 4 cut(s) 654, 825, 930, 2903
BsnI GGCC 8 cut(s) 281, 365, 1129, 1586, 2231, 3090, 3122, 3454
Bso31I GGTCTC 1 cut(s) 2004
BsoBI CYCGRG 2 cut(s) 331, 1825
Bsp1286I GDGCHC 4 cut(s) 853, 1110, 1597, 3490
Bsp1720I GCTNAGC 1 cut(s) 89
Bsp19I CCATGG 1 cut(s) 151
BspACI CCGC 7 cut(s) 47, 98, 352, 438, 639, 900, 2920
BspANI GGCC 8 cut(s) 281, 365, 1129, 1586, 2231, 3090, 3122, 3454
BspCNI CTCAG 9 cut(s) 81, 1305, 2066, 2293, 2566, 2643, 3198, 3496, 3671
BspFNI CGCG 3 cut(s) 104, 352, 1821
BspLI GGNNCC 5 cut(s) 1363, 1905, 1914, 2035, 3283
BspMAI CTGCAG 3 cut(s) 1003, 1012, 3711
BspTI CTTAAG 1 cut(s) 1928
BspTNI GGTCTC 1 cut(s) 2004
BsrDI GCAATG 2 cut(s) 2281, 2730
BsrFI RCCGGY 2 cut(s) 1036, 1345
BsrI ACTGG 8 cut(s) 167, 366, 420, 658, 1504, 1814, 2447, 3483
BssAI RCCGGY 2 cut(s) 1036, 1345
BssECI CCNNGG 7 cut(s) 30, 151, 573, 1907, 2014, 3285, 3513
BssNAI GTATAC 1 cut(s) 2757
BssSI CACGAG 1 cut(s) 1588
BssT1I CCWWGG 3 cut(s) 151, 573, 1907
Bst1107I GTATAC 1 cut(s) 2757
Bst2BI CACGAG 1 cut(s) 1588
Bst2UI CCWGG 2 cut(s) 389, 1126
Bst6I CTCTTC 4 cut(s) 1404, 1878, 2660, 3717
BstAFI CTTAAG 1 cut(s) 1928
BstAPI GCANNNNNTGC 3 cut(s) 998, 1007, 3485
BstBAI YACGTR 1 cut(s) 268
BstC8I GCNNGC 5 cut(s) 898, 1760, 2000, 2788, 3456
BstDSI CCRYGG 3 cut(s) 30, 151, 3513
BstENI CCTNNNNNAGG 3 cut(s) 251, 386, 1637
BstF5I GGATG 6 cut(s) 330, 1095, 1140, 1402, 2291, 2603
BstFNI CGCG 3 cut(s) 104, 352, 1821
BstHHI GCGC 1 cut(s) 352
BstMAI GTCTC 6 cut(s) 59, 900, 1941, 2004, 3205, 3638
BstNI CCWGG 2 cut(s) 389, 1126
BstNSI RCATGY 5 cut(s) 976, 2135, 2434, 2552, 2741
BstSCI CCNGG 2 cut(s) 387, 1124
BstSFI CTRYAG 3 cut(s) 999, 1008, 3707
BstSLI GKGCMC 2 cut(s) 1110, 3490
BstUI CGCG 3 cut(s) 104, 352, 1821
BstV2I GAAGAC 1 cut(s) 2363
BstX2I RGATCY 4 cut(s) 1294, 1361, 1413, 1986
BstXI CCANNNNNNTGG 2 cut(s) 395, 2489
BstYI RGATCY 4 cut(s) 1294, 1361, 1413, 1986
BstZ17I GTATAC 1 cut(s) 2757
Bsu36I CCTNAGG 1 cut(s) 1313
BsuRI GGCC 8 cut(s) 281, 365, 1129, 1586, 2231, 3090, 3122, 3454
BtgI CCRYGG 3 cut(s) 30, 151, 3513
BtsCI GGATG 6 cut(s) 330, 1095, 1140, 1402, 2291, 2603
BtsI GCAGTG 3 cut(s) 563, 1207, 3440
Cac8I GCNNGC 5 cut(s) 898, 1760, 2000, 2788, 3456
CaiI CAGNNNCTG 2 cut(s) 1007, 1989
CfoI GCGC 1 cut(s) 352
Cfr10I RCCGGY 2 cut(s) 1036, 1345
Cfr13I GGNCC 3 cut(s) 3089, 3121, 3282
CseI GACGC 3 cut(s) 110, 1756, 2129
CspCI CAANNNNNGTGG 2 cut(s) 1467, 1502
DraIII CACNNNGTG 1 cut(s) 2194
Eam1104I CTCTTC 4 cut(s) 1404, 1878, 2660, 3717
EarI CTCTTC 4 cut(s) 1404, 1878, 2660, 3717
EciI GGCGGA 2 cut(s) 62, 628
Eco130I CCWWGG 3 cut(s) 151, 573, 1907
Eco147I AGGCCT 1 cut(s) 3454
Eco24I GRGCYC 1 cut(s) 853
Eco31I GGTCTC 1 cut(s) 2004
Eco32I GATATC 2 cut(s) 176, 2983
Eco47I GGWCC 1 cut(s) 3282
Eco57I CTGAAG 4 cut(s) 249, 269, 1966, 3318
Eco81I CCTNAGG 1 cut(s) 1313
Eco88I CYCGRG 2 cut(s) 331, 1825
EcoNI CCTNNNNNAGG 3 cut(s) 251, 386, 1637
EcoRII CCWGG 2 cut(s) 387, 1124
EcoRV GATATC 2 cut(s) 176, 2983
EcoT14I CCWWGG 3 cut(s) 151, 573, 1907
EcoT22I ATGCAT 1 cut(s) 718
EcoT38I GRGCYC 1 cut(s) 853
ErhI CCWWGG 3 cut(s) 151, 573, 1907
FalI AAGNNNNNCTT 4 cut(s) 1617, 1649, 2057, 2089
FaqI GGGAC 4 cut(s) 145, 1503, 1759, 3295
FauI CCCGC 2 cut(s) 431, 893
FbaI TGATCA 1 cut(s) 1023
FblI GTMKAC 1 cut(s) 2756
FokI GGATG 6 cut(s) 337, 1082, 1127, 1409, 2298, 2590
FriOI GRGCYC 1 cut(s) 853
FspBI CTAG 9 cut(s) 645, 914, 1232, 1836, 1908, 2651, 3224, 3321, 3435
GlaI GCGC 1 cut(s) 351
GsuI CTGGAG 1 cut(s) 2464
HaeIII GGCC 8 cut(s) 281, 365, 1129, 1586, 2231, 3090, 3122, 3454
HapII CCGG 5 cut(s) 968, 1037, 1130, 1346, 3023
HgaI GACGC 3 cut(s) 110, 1756, 2129
HhaI GCGC 1 cut(s) 352
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HincII GTYRAC 1 cut(s) 2440
HindII GTYRAC 1 cut(s) 2440
HindIII AAGCTT 1 cut(s) 2788
HpaI GTTAAC 1 cut(s) 2440
HpaII CCGG 5 cut(s) 968, 1037, 1130, 1346, 3023
HphI GGTGA 3 cut(s) 2365, 2543, 3529
Hpy166II GTNNAC 6 cut(s) 1108, 2267, 2440, 2757, 3053, 3688
Hpy8I GTNNAC 6 cut(s) 1108, 2267, 2440, 2757, 3053, 3688
Hpy99I CGWCG 1 cut(s) 3173
HpyCH4IV ACGT 5 cut(s) 134, 267, 671, 1323, 2109
HpySE526I ACGT 5 cut(s) 134, 267, 671, 1323, 2109
HspAI GCGC 1 cut(s) 350
Ksp22I TGATCA 1 cut(s) 1023
KspAI GTTAAC 1 cut(s) 2440
LmnI GCTCC 8 cut(s) 23, 49, 941, 1328, 1912, 3098, 3257, 3471
LweI GCATC 9 cut(s) 460, 1387, 1618, 2406, 2463, 2524, 2612, 3484, 3683
MaeI CTAG 9 cut(s) 645, 914, 1232, 1836, 1908, 2651, 3224, 3321, 3435
MaeII ACGT 5 cut(s) 134, 267, 671, 1323, 2109
MaeIII GTNAC 7 cut(s) 446, 880, 1370, 2560, 2612, 3028, 3350
MfeI CAATTG 2 cut(s) 474, 3573
MflI RGATCY 4 cut(s) 1294, 1361, 1413, 1986
MhlI GDGCHC 4 cut(s) 853, 1110, 1597, 3490
MluI ACGCGT 1 cut(s) 102
MlyI GAGTC 7 cut(s) 61, 1509, 1616, 1817, 1943, 2241, 2585
MmeI TCCRAC 4 cut(s) 87, 151, 703, 790
Mph1103I ATGCAT 1 cut(s) 718
MroXI GAANNNNTTC 2 cut(s) 3044, 3109
MseI TTAA 9 cut(s) 240, 356, 416, 1256, 1929, 2439, 2973, 3017, 3261
MslI CAYNNNNRTG 3 cut(s) 647, 2348, 2888
MspA1I CMGCKG 6 cut(s) 299, 438, 920, 998, 2540, 3706
MspCI CTTAAG 1 cut(s) 1928
MspI CCGG 5 cut(s) 968, 1037, 1130, 1346, 3023
MspR9I CCNGG 2 cut(s) 389, 1126
MunI CAATTG 2 cut(s) 474, 3573
Mva1269I GAATGC 4 cut(s) 654, 825, 930, 2903
MvaI CCWGG 2 cut(s) 389, 1126
MvnI CGCG 3 cut(s) 104, 352, 1821
NcoI CCATGG 1 cut(s) 151
NlaIV GGNNCC 5 cut(s) 1363, 1905, 1914, 2035, 3283
NmeAIII GCCGAG 1 cut(s) 88
NmuCI GTSAC 3 cut(s) 880, 1370, 2612
NsiI ATGCAT 1 cut(s) 718
NspI RCATGY 5 cut(s) 976, 2135, 2434, 2552, 2741
PaeR7I CTCGAG 2 cut(s) 331, 1825
PceI AGGCCT 1 cut(s) 3454
PctI GAATGC 4 cut(s) 654, 825, 930, 2903
PdmI GAANNNNTTC 2 cut(s) 3044, 3109
PfeI GAWTC 9 cut(s) 75, 592, 1078, 1242, 1267, 1530, 1601, 2863, 3500
Pfl23II CGTACG 1 cut(s) 264
PflMI CCANNNNNTGG 1 cut(s) 157
PleI GAGTC 7 cut(s) 61, 1508, 1615, 1817, 1942, 2241, 2584
PpsI GAGTC 7 cut(s) 61, 1508, 1615, 1817, 1942, 2241, 2584
Ppu21I YACGTR 1 cut(s) 268
PsiI TTATAA 2 cut(s) 1043, 2090
Psp6I CCWGG 2 cut(s) 387, 1124
PspGI CCWGG 2 cut(s) 387, 1124
PspLI CGTACG 1 cut(s) 264
PspN4I GGNNCC 5 cut(s) 1363, 1905, 1914, 2035, 3283
PspPI GGNCC 3 cut(s) 3089, 3121, 3282
PspXI VCTCGAGB 1 cut(s) 331
PstI CTGCAG 3 cut(s) 1003, 1012, 3711
PstNI CAGNNNCTG 2 cut(s) 1007, 1989
PsuI RGATCY 4 cut(s) 1294, 1361, 1413, 1986
PvuII CAGCTG 5 cut(s) 299, 920, 998, 2540, 3706
RseI CAYNNNNRTG 3 cut(s) 647, 2348, 2888
SaqAI TTAA 9 cut(s) 240, 356, 416, 1256, 1929, 2439, 2973, 3017, 3261
Sau96I GGNCC 3 cut(s) 3089, 3121, 3282
ScaI AGTACT 1 cut(s) 1219
SchI GAGTC 7 cut(s) 61, 1509, 1616, 1817, 1943, 2241, 2585
ScrFI CCNGG 2 cut(s) 389, 1126
SduI GDGCHC 4 cut(s) 853, 1110, 1597, 3490
SfaNI GCATC 9 cut(s) 460, 1387, 1618, 2406, 2463, 2524, 2612, 3484, 3683
SfcI CTRYAG 3 cut(s) 999, 1008, 3707
Sfr274I CTCGAG 2 cut(s) 331, 1825
SinI GGWCC 1 cut(s) 3282
SlaI CTCGAG 2 cut(s) 331, 1825
SmiMI CAYNNNNRTG 3 cut(s) 647, 2348, 2888
SmlI CTYRAG 7 cut(s) 331, 1070, 1338, 1825, 1928, 3541, 3691
SmoI CTYRAG 7 cut(s) 331, 1070, 1338, 1825, 1928, 3541, 3691
SpeI ACTAGT 2 cut(s) 1835, 3223
SseBI AGGCCT 1 cut(s) 3454
SsiI CCGC 7 cut(s) 47, 98, 352, 438, 639, 900, 2920
SspI AATATT 2 cut(s) 1090, 2144
SspMI CTAG 9 cut(s) 645, 914, 1232, 1836, 1908, 2651, 3224, 3321, 3435
StuI AGGCCT 1 cut(s) 3454
StyD4I CCNGG 2 cut(s) 387, 1124
StyI CCWWGG 3 cut(s) 151, 573, 1907
TaiI ACGT 5 cut(s) 137, 270, 674, 1326, 2112
TaqI TCGA 8 cut(s) 332, 1275, 1826, 2348, 2934, 2985, 3168, 3471
TaqII GACCGA 1 cut(s) 3299
TatI WGTACW 3 cut(s) 327, 1217, 2266
TfiI GAWTC 9 cut(s) 75, 592, 1078, 1242, 1267, 1530, 1601, 2863, 3500
Tru1I TTAA 9 cut(s) 240, 356, 416, 1256, 1929, 2439, 2973, 3017, 3261
Tru9I TTAA 9 cut(s) 240, 356, 416, 1256, 1929, 2439, 2973, 3017, 3261
TseFI GTSAC 3 cut(s) 880, 1370, 2612
Tsp45I GTSAC 3 cut(s) 880, 1370, 2612
TspGWI ACGGA 6 cut(s) 252, 2344, 3103, 3186, 3378, 3502
Van91I CCANNNNNTGG 1 cut(s) 157
Vha464I CTTAAG 1 cut(s) 1928
VneI GTGCAC 1 cut(s) 1106
VpaK11BI GGWCC 1 cut(s) 3282
XagI CCTNNNNNAGG 3 cut(s) 251, 386, 1637
XapI RAATTY 4 cut(s) 528, 1775, 2987, 3341
XbaI TCTAGA 1 cut(s) 2650
XceI RCATGY 5 cut(s) 976, 2135, 2434, 2552, 2741
XcmI CCANNNNNNNNNTGG 2 cut(s) 2489, 3619
XhoI CTCGAG 2 cut(s) 331, 1825
XmaJI CCTAGG 1 cut(s) 1907
XmiI GTMKAC 1 cut(s) 2756
XmnI GAANNNNTTC 2 cut(s) 3044, 3109
XspI CTAG 9 cut(s) 645, 914, 1232, 1836, 1908, 2651, 3224, 3321, 3435
ZrmI AGTACT 1 cut(s) 1219
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.