RLG00000026110

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0012655
Physical Location & Seq
Forward (+)
606381 .. 610958
4578 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026110

Sequence Viewer

Length: 3771 bp
ATGGTTCAACCTCAACCCCACGAAGAACTCATGCAGAATATGGAAAAGAAGATGCAAGCAATCGGTGAGGATGATGAGACGAAGGGAAGCTCATCCGAAACGTTGGGATTCAGTAAGCTGCTAAGCTATGCCGACGGATGGGATTGGATTATGATGGTATTGGGGACGTTGGGTTCTGTTGTCCATGGTATGGCTTTTCCAGTTGGATATCTACTGCTCGGCAGAGCACTCGATGCTTTTGGGAACAATATCAACGACACACCTGCCATGGTTAAAGCACTGAACAAGGTTATTCCATATGTGTGGTACATGGCCTTCGCCACATTTCCGGCTGGAATACTCGAAGTTGGATGCTGGATGTATTCAAGTGAAAGACAAGTGGCACGTCTAAGACTAGCATATCTAAGAGCAGTGCTCAGCCAGGAGGTTGGGGCTTTCGATACAGACTTAACCAGTGGAAAAGTGATCACCGGAATCAGTAACCACACTAGTATCATACACAGTGCAATCGGAGAGACGTTGGGGCATTTTCTGTCAAGTTTCGCAACTTTCTTTTCGGGGATTTTGATTGCTGCAATATGCTGTTGGGAAGTTGCACTGCTTACCTTGTTGGTTGTTCCTTTGATTCTTGTAATTGGAGCCACTTATACTAAGAAGATGAACGCTGTATCAGCCGCTAGGATGCTTTACCTGGCGGAAGCTACCTCTATGGTAGAACAGACCATATGTCAAATCAAAACAGTATATGCATTCGTTGGAGAAAACTCGGCAATCAAATCTTTCTCAAACTGCATGGCCAAACAGTATTTGCTAAGCAAAGGGGAAGCTCTAATAAAGGGAGTTGGAACAGGAATGCTTCAATCTGTGACCTTCATTTCTTGGGCTATCATCATTTGGGTTGGTGCTGTTGTAGTTACTGCCAAGAGGGCAAGTGGTGGAGATATTATAGCCGCTGTCATGAGCATTCTATTTGGAGCCATATCACTCACTTATGCTGCGCCGGACATGCAAGTCTTCAATCAGGCAAAGGCTGCAGGAACTGAAGTTTTCAAGGTGATCAACAGAAAGCCAGCTATAAGTTATAATTCACCAGGGAAGGAACTTGACAAGATTTACGGCAACATTGACATACATGATGTTTACTTTTCCTACCCTTCCCGGCCTGACAGAGACATCCTTCAAGGCTTTTCATTGTCAATCCCAGCAGGAAAAACTGTAGCCTTTGTGGGCAGCAGTGGCTGTGGAAAGAGTACTATCATCTCACTAGTTGCAAGATTCTACGATCCGTCAAAAGGGGAGATTCTGATTGACAACCACAACATCAAGGATCTTGACTTGAAATTCCTGAGGAAAAACATAGGTGCTGTTTCGCAAGAACCATCACTGTTTGCAGGCACAATTGCCGACAACATGAAAGTCGGTAAGATGGATGCAGAAGATGTAGAGATCCAGAAAGCATCGGTGATGGCAAATGCACACACTTTCATATCTCAACTTCCAGATCAGTACTCCACAGAGGTAGGACAAAGGGGAGTCCAGTTATCTGGAGGCCAGAAGCAGAGAATCGCCATAGCAAGAGCCATTCTCAAGAATCCTCCTATTCTTCTGCTTGATGAGGCAACAAGTGCTCTTGACTCGGAGTCTGAGAAGGTGGTTCAAGAAGCCCTTGACAAGGCTATGCAAGGAAGGACAGTCATCTTGATAGCACACAGACTATCAACTATTGTTAATGCAGATATTATTGCGGTTGTGGAAAATGGACAAGTTACAGAAACAGGAACTCACCGGAGCTTACTTGAAAGCAGCAAATTCTACAACAACTTATTTAGCATGCAGAACCTCAACCCAGTTCATGAGTCGAGAGAATATGGTCCCTCTGAAGAACCTGAAAGCATCCACCAACAGAATTCACCTGAAAAGGTAAGACAAGCAAAGGAGCCCCACAGCGACCGGTATCCTAATGAGCCTCCCAAGCAAGAAGAAGAGGAAATAAGAAAAAGATCAATATTCTTCAGAATCTGGTTTGGCTTGAAAACGAGAGAACTTGTGAAGATTGCTATTGGTTCTTTTGCAGCAGCTTTCTCTGGCATATCAAAGCCTGTCTTTGGGTATTACATTATAACAATAGGAGTAGCATACTACCACCCAGATGCTAAAAAGAAAGTCTCAAAATATTCAATCACCTTCGCTCTACTGGGATTCATTTCCTTGTTCTCTCACACCTTGCAACATTACTTCTTTGGAATGGTTGGAGAGAAGGCCATGACAAACCTGAGACGTGCTCTCTATTCAGGTGTGCTACGGAATGAAATCGGATGGTATGAGAAACCCGAGAATGGCATTGGACAGCTCACCTCAAGGATCATCAATGACACTTCAATGGTTAAACTGGTAATTGCTGACCGGATGTCTGTCATTGTTCAATGCATCTCCTCCATACTGATTGCAACCATTGTGAGCATGGTTGTCAACTGGAGAATGGGGTTGGTAGCTTGGGCTGTGATGCCTTGCCACTTCATTGGCGGTCTCATTCAAGCCAAGTCTGCCAAGGGTTTTGCAGGAGACTCAGCTGCTGCACATAATAAACTTGTTTCTCTTGCTTCTGAGTCTGCACAAAACATAAGAACCGTTGCATCGTTTTGCCATGAAGATCAGATACTCAAAAAAGCTGAAATATCTCTGGAAACACCCAGGAGAATGAGCAGGAAAGAAAGTATCAAGTATGGCATAATTCAGGGAGTTTCTCTTTGCTTATGGAACATTGCACATGCTGTGGCATTGTGGTACACAACAGTTTTGGTTCATAAAAATCAATCGAGCTTCAAAGATGGCATAAGATCATACCAGATTTTCTCTCTCACAGTACCTTCAATCACAGAATTGTGGACCTTGATTCCCACTGTCATTTCTGCCATCAATGTGCTCACTCCTGCATTCGAGACCCTTGACCGCAAAACTGAAATAGATCCATCTACACCAGAAACTTCAAATCGGGACAGCATTAAGGGGAACATTGAATTTCAAAACGTTGAGTTTAATTACCCTTTGAGACCAGAAGTAACTATCCTGAACAACTTCAGTGTACAAATTGAAGCTGGAAAAAAGGTGGCTCTTGTCGGTCCAAGTGGAGCTGGAAAATCTTCAGTTCTGGCCCTTCTGCTAAGATTTTATGATCCCTTGAAAGGTAAGATACTCATTGATGGAAAGGAGATAAGGGAATACAATTTAAGATGGCTGAGAACACAAATAGGGTTGGTGCAACAAGAGCCTCTTCTTTTTAGCTCCTCAATCAGACACAATATCTGCTACGGGAACGAAAGTGCTTCTGAAACTGAGATTGTGGAGGTATCAAAGGAAGCAAACATTGATGAGTTCATAAGTAATTTGCCTGATGGATATGAAACAGTTGTTGGGGAGAAGGGATGCCAACTTTCAGGAGGACAAAAGCAAAGAATAGCCATAGCTAGAACACTGCTAAAGAGGCCTGCAATTTTGCTTCTGGATGAAGCAACAAGTGCCCTTGATGCTGAATCTGAGAAATCTGTGGTGAGTGCATTGGAAGCTATAAATTTGAAAAAGAATGGGGCCCTGCTGTCAAAAACCACACAGATTACAGTTGCACATAGGCTTTCCACAATAATAAAGTCAGATATCATTGTTGTCATGGACAAAGGTGAGATTGTGGAGATGGGATCCCACTCAACCCTAATAACAGAATCTGAGGGAGTTTATTCAAGATTATATCAGATACAGAGCATGGGAGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1257

Amino Acids

138.04

Weight (kDa)

7.11

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 53 - 326 9.1e-45 ABC transporter transmembrane region
SMC_N PF02463 314 - 584 2e-06 RecF/RecN/SMC N terminal domain
ABC_tran PF00005 393 - 542 1.1e-34 ABC transporter
ABC_membrane PF00664 687 - 949 1.6e-46 ABC transporter transmembrane region
ABC_tran PF00005 1023 - 1172 1.9e-34 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012655)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g32300 FvH4_7g32320 FvH4_7g33380
malus_domestica MD01G1232000.v1.1 MD01G1232100.v1.1
prunus_persica Prupe.2G322600_v2.0.a1
pyrus_communis pycom01g24050
rosa_chinensis RchiOBHm_Chr1g0383351
rosa_laevigata RLG00000026110
rosa_multiflora Rmu_sc0007173.1_g000013
rosa_roxburghii Rroxscaffold_4G00277370
rosa_rugosa Rorug01G0440700
rosa_samantha Rh1AG466600 Rh1BG423900 Rh1BG424000 Rh1CG437100 Rh1DG456600 Rh1DG456700
rosa_wichuraiana Rw1G040590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1083, 2120
AarI CACCTGC 1 cut(s) 271
AasI GACNNNNNNGTC 1 cut(s) 1010
Acc36I ACCTGC 1 cut(s) 271
AccB7I CCANNNNNTGG 1 cut(s) 190
AciI CCGC 6 cut(s) 675, 695, 951, 1745, 2523, 2950
AclI AACGTT 2 cut(s) 101, 3027
AclWI GGATC 8 cut(s) 1277, 1335, 1441, 2369, 2960, 3167, 3687, 3700
AcoI YGGCCR 1 cut(s) 795
AcsI RAATTY 5 cut(s) 1340, 1808, 1906, 3017, 3568
AcuI CTGAAG 5 cut(s) 1062, 1899, 1996, 3061, 3126
AfaI GTAC 6 cut(s) 308, 1252, 1508, 2786, 2865, 3084
AfiI CCNNNNNNNGG 7 cut(s) 138, 190, 1292, 1672, 2105, 2336, 3182
AgeI ACCGGT 1 cut(s) 1950
AhdI GACNNNNNGTC 3 cut(s) 726, 1639, 2407
AhlI ACTAGT 2 cut(s) 488, 1264
AjiI CACGTC 2 cut(s) 386, 2279
AjnI CCWGG 4 cut(s) 420, 690, 1090, 2690
AjuI GAANNNNNNNTTGG 2 cut(s) 3393, 3425
AloI GAACNNNNNNTCC 2 cut(s) 157, 189
Alw21I GWGCWC 5 cut(s) 229, 417, 1630, 2284, 2925
Alw26I GTCTC 9 cut(s) 71, 509, 1164, 2170, 2269, 2531, 2556, 2933, 3043
AlwI GGATC 8 cut(s) 1277, 1335, 1441, 2369, 2960, 3167, 3687, 3700
AlwNI CAGNNNCTG 5 cut(s) 1040, 1239, 2019, 2573, 3719
Ama87I CYCGRG 1 cut(s) 2330
AoxI GGCC 8 cut(s) 312, 795, 1160, 1549, 2259, 3150, 3482, 3585
ApaI GGGCCC 1 cut(s) 3589
ApoI RAATTY 5 cut(s) 1340, 1808, 1906, 3017, 3568
AsiGI ACCGGT 1 cut(s) 1950
Asp700I GAANNNNTTC 2 cut(s) 3074, 3139
AspLEI GCGC 1 cut(s) 1000
AspS9I GGNCC 6 cut(s) 1871, 2886, 3119, 3151, 3585, 3586
AsuC2I CCSGG 1 cut(s) 1159
AvaI CYCGRG 1 cut(s) 2330
AvaII GGWCC 3 cut(s) 1871, 2886, 3119
AxyI CCTNAGG 1 cut(s) 1346
BaeGI GKGCMC 2 cut(s) 3520, 3589
BaeI ACNNNNGTAYC 2 cut(s) 475, 508
BalI TGGCCA 1 cut(s) 797
BamHI GGATCC 1 cut(s) 3692
BanII GRGCYC 2 cut(s) 1941, 3589
BarI GAAGNNNNNNTAC 4 cut(s) 299, 331, 2640, 2672
BbsI GAAGAC 1 cut(s) 1006
Bbv12I GWGCWC 5 cut(s) 229, 417, 1630, 2284, 2925
BceAI ACGGC 1 cut(s) 1132
BcgI CGANNNNNNTGC 4 cut(s) 211, 245, 245, 279
BciT130I CCWGG 4 cut(s) 422, 692, 1092, 2692
BciVI GTATCC 1 cut(s) 1965
BclI TGATCA 2 cut(s) 465, 1056
BcnI CCSGG 1 cut(s) 1159
BcoDI GTCTC 9 cut(s) 71, 509, 1164, 2170, 2269, 2531, 2556, 2933, 3043
BcuI ACTAGT 2 cut(s) 488, 1264
BfaI CTAG 5 cut(s) 395, 489, 678, 1265, 3465
BfmI CTRYAG 2 cut(s) 1032, 1215
BfuAI ACCTGC 1 cut(s) 271
BfuI GTATCC 1 cut(s) 1965
BglI GCCNNNNNGGC 1 cut(s) 926
BlpI GCTNAGC 3 cut(s) 122, 416, 812
BmcAI AGTACT 2 cut(s) 1252, 1508
Bme1390I CCNGG 5 cut(s) 422, 692, 1092, 1159, 2692
Bme18I GGWCC 3 cut(s) 1871, 2886, 3119
BmeRI GACNNNNNGTC 3 cut(s) 726, 1639, 2407
BmeT110I CYCGRG 1 cut(s) 2330
BmgBI CACGTC 2 cut(s) 386, 2279
BmgT120I GGNCC 6 cut(s) 1871, 2886, 3119, 3151, 3585, 3586
BmiI GGNNCC 7 cut(s) 640, 976, 1873, 1938, 3586, 3587, 3694
BmrFI CCNGG 5 cut(s) 422, 692, 1092, 1159, 2692
BmrI ACTGGG 2 cut(s) 1841, 2204
BmuI ACTGGG 2 cut(s) 1841, 2204
BpiI GAAGAC 1 cut(s) 1006
BplI GAGNNNNNCTC 6 cut(s) 399, 431, 1569, 1601, 2266, 2298
BpmI CTGGAG 2 cut(s) 1566, 2494
Bpu1102I GCTNAGC 3 cut(s) 122, 416, 812
BpuEI CTTGAG 2 cut(s) 1571, 2341
BpuMI CCSGG 1 cut(s) 1159
BsaI GGTCTC 3 cut(s) 2531, 2933, 3043
BsaJI CCNNGG 5 cut(s) 184, 267, 1091, 2547, 2690
BsaWI WCCGGW 4 cut(s) 470, 1785, 1950, 2403
Bsc4I CCNNNNNNNGG 7 cut(s) 138, 190, 1292, 1672, 2105, 2336, 3182
Bse118I RCCGGY 1 cut(s) 1950
Bse1I ACTGG 7 cut(s) 200, 453, 1537, 1847, 2199, 2394, 2477
Bse21I CCTNAGG 1 cut(s) 1346
Bse3DI GCAATG 1 cut(s) 2760
BseBI CCWGG 4 cut(s) 422, 692, 1092, 2692
BseDI CCNNGG 5 cut(s) 184, 267, 1091, 2547, 2690
BseLI CCNNNNNNNGG 7 cut(s) 138, 190, 1292, 1672, 2105, 2336, 3182
BseMI GCAATG 1 cut(s) 2760
BseNI ACTGG 7 cut(s) 200, 453, 1537, 1847, 2199, 2394, 2477
BseRI GAGGAG 2 cut(s) 2422, 3274
BseSI GKGCMC 2 cut(s) 3520, 3589
BseYI CCCAGC 1 cut(s) 1201
BsgI GTGCAG 2 cut(s) 2559, 2595
Bsh1285I CGRYCG 1 cut(s) 1951
BshFI GGCC 8 cut(s) 314, 797, 1162, 1551, 2261, 3152, 3484, 3587
BshTI ACCGGT 1 cut(s) 1950
BsiEI CGRYCG 1 cut(s) 1951
BsiHKAI GWGCWC 5 cut(s) 229, 417, 1630, 2284, 2925
BsiHKCI CYCGRG 1 cut(s) 2330
BsiSI CCGG 7 cut(s) 329, 471, 1001, 1159, 1786, 1951, 2404
BslFI GGGAC 3 cut(s) 178, 1857, 3008
BslI CCNNNNNNNGG 7 cut(s) 138, 190, 1292, 1672, 2105, 2336, 3182
BsmAI GTCTC 9 cut(s) 71, 509, 1164, 2170, 2269, 2531, 2556, 2933, 3043
BsmBI CGTCTC 3 cut(s) 71, 509, 2269
BsmFI GGGAC 3 cut(s) 178, 1857, 3008
BsmI GAATGC 4 cut(s) 749, 858, 963, 2933
BsnI GGCC 8 cut(s) 314, 797, 1162, 1551, 2261, 3152, 3484, 3587
Bso31I GGTCTC 3 cut(s) 2531, 2933, 3043
BsoBI CYCGRG 1 cut(s) 2330
Bsp120I GGGCCC 1 cut(s) 3585
Bsp1286I GDGCHC 8 cut(s) 229, 417, 1630, 1941, 2284, 2925, 3520, 3589
Bsp1407I TGTACA 1 cut(s) 3082
Bsp1720I GCTNAGC 3 cut(s) 122, 416, 812
Bsp19I CCATGG 2 cut(s) 184, 267
BspACI CCGC 6 cut(s) 675, 695, 951, 1745, 2523, 2950
BspANI GGCC 8 cut(s) 314, 797, 1162, 1551, 2261, 3152, 3484, 3587
BspHI TCATGA 2 cut(s) 957, 1852
BspLI GGNNCC 7 cut(s) 640, 976, 1873, 1938, 3586, 3587, 3694
BspMAI CTGCAG 1 cut(s) 1036
BspMI ACCTGC 1 cut(s) 271
BspPI GGATC 8 cut(s) 1277, 1335, 1441, 2369, 2960, 3167, 3687, 3700
BspTNI GGTCTC 3 cut(s) 2531, 2933, 3043
BsrDI GCAATG 1 cut(s) 2760
BsrFI RCCGGY 1 cut(s) 1950
BsrGI TGTACA 1 cut(s) 3082
BsrI ACTGG 7 cut(s) 200, 453, 1537, 1847, 2199, 2394, 2477
BssAI RCCGGY 1 cut(s) 1950
BssECI CCNNGG 5 cut(s) 184, 267, 1091, 2547, 2690
BssT1I CCWWGG 3 cut(s) 184, 267, 2547
Bst2UI CCWGG 4 cut(s) 422, 692, 1092, 2692
Bst6I CTCTTC 3 cut(s) 1977, 3276, 3759
BstAPI GCANNNNNTGC 4 cut(s) 233, 1031, 1625, 3515
BstAUI TGTACA 1 cut(s) 3082
BstC8I GCNNGC 5 cut(s) 57, 1071, 1393, 1832, 3486
BstDSI CCRYGG 2 cut(s) 184, 267
BstENI CCTNNNNNAGG 1 cut(s) 1670
BstHHI GCGC 1 cut(s) 1000
BstMAI GTCTC 9 cut(s) 71, 509, 1164, 2170, 2269, 2531, 2556, 2933, 3043
BstMCI CGRYCG 1 cut(s) 1951
BstNI CCWGG 4 cut(s) 422, 692, 1092, 2692
BstNSI RCATGY 3 cut(s) 1009, 1834, 2771
BstSCI CCNGG 5 cut(s) 420, 690, 1090, 1157, 2690
BstSFI CTRYAG 2 cut(s) 1032, 1215
BstSLI GKGCMC 2 cut(s) 3520, 3589
BstV2I GAAGAC 1 cut(s) 1006
BstX2I RGATCY 4 cut(s) 1327, 1446, 2965, 3692
BstXI CCANNNNNNTGG 4 cut(s) 303, 428, 1544, 2519
BstYI RGATCY 4 cut(s) 1327, 1446, 2965, 3692
Bsu36I CCTNAGG 1 cut(s) 1346
BsuI GTATCC 1 cut(s) 1965
BsuRI GGCC 8 cut(s) 314, 797, 1162, 1551, 2261, 3152, 3484, 3587
BtgI CCRYGG 2 cut(s) 184, 267
BtrI CACGTC 2 cut(s) 386, 2279
BtsI GCAGTG 4 cut(s) 417, 596, 1240, 3470
BveI ACCTGC 1 cut(s) 271
Cac8I GCNNGC 5 cut(s) 57, 1071, 1393, 1832, 3486
CaiI CAGNNNCTG 5 cut(s) 1040, 1239, 2019, 2573, 3719
CciI TCATGA 2 cut(s) 957, 1852
CfoI GCGC 1 cut(s) 1000
Cfr10I RCCGGY 1 cut(s) 1950
Cfr13I GGNCC 6 cut(s) 1871, 2886, 3119, 3151, 3585, 3586
Csp6I GTAC 6 cut(s) 307, 1251, 1507, 2785, 2864, 3083
CspAI ACCGGT 1 cut(s) 1950
CviQI GTAC 6 cut(s) 307, 1251, 1507, 2785, 2864, 3083
DrdI GACNNNNNNGTC 1 cut(s) 1010
DriI GACNNNNNGTC 3 cut(s) 726, 1639, 2407
DseDI GACNNNNNNGTC 1 cut(s) 1010
EaeI YGGCCR 1 cut(s) 795
Eam1104I CTCTTC 3 cut(s) 1977, 3276, 3759
Eam1105I GACNNNNNGTC 3 cut(s) 726, 1639, 2407
EarI CTCTTC 3 cut(s) 1977, 3276, 3759
EciI GGCGGA 1 cut(s) 710
Eco130I CCWWGG 3 cut(s) 184, 267, 2547
Eco147I AGGCCT 1 cut(s) 3484
Eco24I GRGCYC 2 cut(s) 1941, 3589
Eco31I GGTCTC 3 cut(s) 2531, 2933, 3043
Eco32I GATATC 2 cut(s) 209, 3652
Eco47I GGWCC 3 cut(s) 1871, 2886, 3119
Eco57I CTGAAG 5 cut(s) 1062, 1899, 1996, 3061, 3126
Eco81I CCTNAGG 1 cut(s) 1346
Eco88I CYCGRG 1 cut(s) 2330
EcoNI CCTNNNNNAGG 1 cut(s) 1670
EcoO109I RGGNCCY 2 cut(s) 3585, 3586
EcoRI GAATTC 1 cut(s) 1906
EcoRII CCWGG 4 cut(s) 420, 690, 1090, 2690
EcoRV GATATC 2 cut(s) 209, 3652
EcoT14I CCWWGG 3 cut(s) 184, 267, 2547
EcoT22I ATGCAT 2 cut(s) 751, 2429
EcoT38I GRGCYC 2 cut(s) 1941, 3589
ErhI CCWWGG 3 cut(s) 184, 267, 2547
Esp3I CGTCTC 3 cut(s) 71, 509, 2269
FalI AAGNNNNNCTT 6 cut(s) 1650, 1682, 2087, 2119, 3255, 3287
FaqI GGGAC 3 cut(s) 178, 1857, 3008
FauNDI CATATG 2 cut(s) 298, 725
FbaI TGATCA 2 cut(s) 465, 1056
FriOI GRGCYC 2 cut(s) 1941, 3589
FspBI CTAG 5 cut(s) 395, 489, 678, 1265, 3465
GlaI GCGC 1 cut(s) 999
GsaI CCCAGC 1 cut(s) 1205
GsuI CTGGAG 2 cut(s) 1566, 2494
HaeIII GGCC 8 cut(s) 314, 797, 1162, 1551, 2261, 3152, 3484, 3587
HapII CCGG 7 cut(s) 329, 471, 1001, 1159, 1786, 1951, 2404
HhaI GCGC 1 cut(s) 1000
Hin6I GCGC 1 cut(s) 998
HinP1I GCGC 1 cut(s) 998
HincII GTYRAC 1 cut(s) 2470
HindII GTYRAC 1 cut(s) 2470
HpaII CCGG 7 cut(s) 329, 471, 1001, 1159, 1786, 1951, 2404
Hpy166II GTNNAC 5 cut(s) 1141, 2470, 2787, 2886, 3083
Hpy8I GTNNAC 5 cut(s) 1141, 2470, 2787, 2886, 3083
Hpy99I CGWCG 1 cut(s) 137
HpyCH4IV ACGT 6 cut(s) 101, 167, 385, 518, 2278, 3027
HpySE526I ACGT 6 cut(s) 101, 167, 385, 518, 2278, 3027
HspAI GCGC 1 cut(s) 998
Ksp22I TGATCA 2 cut(s) 465, 1056
LmnI GCTCC 6 cut(s) 638, 974, 1788, 1936, 3128, 3287
MaeI CTAG 5 cut(s) 395, 489, 678, 1265, 3465
MaeII ACGT 6 cut(s) 101, 167, 385, 518, 2278, 3027
MaeIII GTNAC 5 cut(s) 479, 865, 913, 1765, 3058
MfeI CAATTG 1 cut(s) 1398
MflI RGATCY 4 cut(s) 1327, 1446, 2965, 3692
MhlI GDGCHC 8 cut(s) 229, 417, 1630, 1941, 2284, 2925, 3520, 3589
MlsI TGGCCA 1 cut(s) 797
MluNI TGGCCA 1 cut(s) 797
MlyI GAGTC 6 cut(s) 1542, 1628, 1649, 1865, 2558, 2615
MmeI TCCRAC 5 cut(s) 184, 328, 736, 823, 2230
Mox20I TGGCCA 1 cut(s) 797
Mph1103I ATGCAT 2 cut(s) 751, 2429
MroXI GAANNNNTTC 2 cut(s) 3074, 3139
MscI TGGCCA 1 cut(s) 797
MseI TTAA 7 cut(s) 273, 449, 1728, 2385, 3003, 3036, 3227
MslI CAYNNNNRTG 4 cut(s) 301, 2148, 2378, 2918
Msp20I TGGCCA 1 cut(s) 797
MspA1I CMGCKG 2 cut(s) 953, 2570
MspI CCGG 7 cut(s) 329, 471, 1001, 1159, 1786, 1951, 2404
MspR9I CCNGG 5 cut(s) 422, 692, 1092, 1159, 2692
MunI CAATTG 1 cut(s) 1398
Mva1269I GAATGC 4 cut(s) 749, 858, 963, 2933
MvaI CCWGG 4 cut(s) 422, 692, 1092, 2692
NciI CCSGG 1 cut(s) 1159
NcoI CCATGG 2 cut(s) 184, 267
NdeI CATATG 2 cut(s) 298, 725
NlaIV GGNNCC 7 cut(s) 640, 976, 1873, 1938, 3586, 3587, 3694
NmeAIII GCCGAG 2 cut(s) 198, 746
NmuCI GTSAC 1 cut(s) 865
NsiI ATGCAT 2 cut(s) 751, 2429
NspI RCATGY 3 cut(s) 1009, 1834, 2771
PaeI GCATGC 1 cut(s) 1834
PagI TCATGA 2 cut(s) 957, 1852
PaqCI CACCTGC 1 cut(s) 271
PceI AGGCCT 1 cut(s) 3484
PctI GAATGC 4 cut(s) 749, 858, 963, 2933
PdmI GAANNNNTTC 2 cut(s) 3074, 3139
PflMI CCANNNNNTGG 1 cut(s) 190
PinAI ACCGGT 1 cut(s) 1950
PleI GAGTC 6 cut(s) 1541, 1628, 1648, 1864, 2558, 2614
PpsI GAGTC 6 cut(s) 1541, 1628, 1648, 1864, 2558, 2614
PsiI TTATAA 2 cut(s) 1083, 2120
Psp1406I AACGTT 2 cut(s) 101, 3027
Psp6I CCWGG 4 cut(s) 420, 690, 1090, 2690
PspFI CCCAGC 1 cut(s) 1201
PspGI CCWGG 4 cut(s) 420, 690, 1090, 2690
PspN4I GGNNCC 7 cut(s) 640, 976, 1873, 1938, 3586, 3587, 3694
PspOMI GGGCCC 1 cut(s) 3585
PspPI GGNCC 6 cut(s) 1871, 2886, 3119, 3151, 3585, 3586
PstI CTGCAG 1 cut(s) 1036
PstNI CAGNNNCTG 5 cut(s) 1040, 1239, 2019, 2573, 3719
PsuI RGATCY 4 cut(s) 1327, 1446, 2965, 3692
PvuII CAGCTG 1 cut(s) 2570
RsaI GTAC 6 cut(s) 308, 1252, 1508, 2786, 2865, 3084
RsaNI GTAC 6 cut(s) 307, 1251, 1507, 2785, 2864, 3083
RseI CAYNNNNRTG 4 cut(s) 301, 2148, 2378, 2918
SaqAI TTAA 7 cut(s) 273, 449, 1728, 2385, 3003, 3036, 3227
Sau96I GGNCC 6 cut(s) 1871, 2886, 3119, 3151, 3585, 3586
ScaI AGTACT 2 cut(s) 1252, 1508
SchI GAGTC 6 cut(s) 1542, 1628, 1649, 1865, 2558, 2615
ScrFI CCNGG 5 cut(s) 422, 692, 1092, 1159, 2692
SduI GDGCHC 8 cut(s) 229, 417, 1630, 1941, 2284, 2925, 3520, 3589
SfcI CTRYAG 2 cut(s) 1032, 1215
SinI GGWCC 3 cut(s) 1871, 2886, 3119
SmiMI CAYNNNNRTG 4 cut(s) 301, 2148, 2378, 2918
SmlI CTYRAG 2 cut(s) 1586, 2356
SmoI CTYRAG 2 cut(s) 1586, 2356
SpeI ACTAGT 2 cut(s) 488, 1264
SphI GCATGC 1 cut(s) 1834
SseBI AGGCCT 1 cut(s) 3484
SsiI CCGC 6 cut(s) 675, 695, 951, 1745, 2523, 2950
SspI AATATT 2 cut(s) 2007, 2174
SspMI CTAG 5 cut(s) 395, 489, 678, 1265, 3465
StuI AGGCCT 1 cut(s) 3484
StyD4I CCNGG 5 cut(s) 420, 690, 1090, 1157, 2690
StyI CCWWGG 3 cut(s) 184, 267, 2547
TaiI ACGT 6 cut(s) 104, 170, 388, 521, 2281, 3030
TaqI TCGA 6 cut(s) 231, 342, 438, 1859, 2816, 2937
TaqII GACCGA 1 cut(s) 3107
TatI WGTACW 3 cut(s) 1250, 1506, 3082
TauI GCSGC 2 cut(s) 677, 953
Tru1I TTAA 7 cut(s) 273, 449, 1728, 2385, 3003, 3036, 3227
Tru9I TTAA 7 cut(s) 273, 449, 1728, 2385, 3003, 3036, 3227
TseFI GTSAC 1 cut(s) 865
Tsp45I GTSAC 1 cut(s) 865
TspGWI ACGGA 3 cut(s) 150, 1275, 2317
Van91I CCANNNNNTGG 1 cut(s) 190
VpaK11BI GGWCC 3 cut(s) 1871, 2886, 3119
XagI CCTNNNNNAGG 1 cut(s) 1670
XapI RAATTY 5 cut(s) 1340, 1808, 1906, 3017, 3568
XceI RCATGY 3 cut(s) 1009, 1834, 2771
XcmI CCANNNNNNNNNTGG 1 cut(s) 2458
XmnI GAANNNNTTC 2 cut(s) 3074, 3139
XspI CTAG 5 cut(s) 395, 489, 678, 1265, 3465
ZrmI AGTACT 2 cut(s) 1252, 1508
Zsp2I ATGCAT 2 cut(s) 751, 2429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.