FvH4_7g33791

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004511
Physical Location & Seq
Forward (+)
23960586 .. 23961611
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g33791.t1

Sequence Viewer

Length: 411 bp
ATGAAGAGCATACCGGCAGTGTTTGCCACCCATGGTGCACTAGTATCTGTTCATCAACGAGAGAGCAAGATTTCAGCCAATGTTGGCCTTTGGATTCTGTTGGCTTTGTCGATCATCAACACAAGAATAATATCCCAGAAGAATCAAATGGTTCTGGAAAATGTCTCAGGAACCAAGATGAAAGACATTAGTTTTCCAATGGCACCAAATGATCAAAAGAATGTGGATTCTTCTGTAACTATCGAAAGTAGAAGCACCTCAGATGTGGTCATTGCTGATGGGCCGCTGACTGAATCACATCCAGAAGAAGAAACAGCCACTATTCAATCAATTGCAAGTTCCCAGAATATTGAATTTGGTTCAGTTGGTCAGGAAATGGCGAAGTCCATGATGACATTTCTTCTTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYRC

Protein Analysis

137

Amino Acids

14.7

Weight (kDa)

5.26

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 202
AciI CCGC 1 cut(s) 284
AcsI RAATTY 1 cut(s) 353
AgsI TTSAA 2 cut(s) 326, 353
AhlI ACTAGT 1 cut(s) 40
Alw21I GWGCWC 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 169
Alw44I GTGCAC 1 cut(s) 36
AoxI GGCC 2 cut(s) 85, 281
ApaLI GTGCAC 1 cut(s) 36
ApoI RAATTY 1 cut(s) 353
AspS9I GGNCC 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 40
BccI CCATC 1 cut(s) 272
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 169
BcuI ACTAGT 1 cut(s) 40
BfaI CTAG 1 cut(s) 41
BisI GCNGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 2 cut(s) 172, 204
BsaJI CCNNGG 1 cut(s) 31
Bse118I RCCGGY 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 1 cut(s) 298
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 2 cut(s) 180, 273
BseSI GKGCMC 1 cut(s) 40
BshFI GGCC 2 cut(s) 87, 283
BshNI GGYRCC 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 40
BsiSI CCGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 169
BsnI GGCC 2 cut(s) 87, 283
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 2 cut(s) 111, 211
Bsp19I CCATGG 1 cut(s) 31
BspACI CCGC 1 cut(s) 284
BspANI GGCC 2 cut(s) 87, 283
BspCNI CTCAG 2 cut(s) 179, 272
BspLI GGNNCC 2 cut(s) 172, 204
BspT107I GGYRCC 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 13
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 2 cut(s) 111, 211
BssT1I CCWWGG 1 cut(s) 31
BstAPI GCANNNNNTGC 1 cut(s) 23
BstDEI CTNAG 2 cut(s) 166, 259
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 1 cut(s) 298
BstKTI GATC 2 cut(s) 114, 214
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 2 cut(s) 111, 211
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstSLI GKGCMC 1 cut(s) 40
BsuRI GGCC 2 cut(s) 87, 283
BtgI CCRYGG 1 cut(s) 31
BtsCI GGATG 1 cut(s) 298
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 281
CviAII CATG 2 cut(s) 32, 388
CviJI RGCY 5 cut(s) 77, 87, 104, 283, 317
CviKI_1 RGCY 5 cut(s) 77, 87, 104, 283, 317
DdeI CTNAG 2 cut(s) 166, 259
DpnI GATC 2 cut(s) 113, 213
DpnII GATC 2 cut(s) 111, 211
Eco130I CCWWGG 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 2 cut(s) 35, 391
FaiI YATR 4 cut(s) 11, 33, 389, 409
FatI CATG 2 cut(s) 31, 387
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 284
FokI GGATG 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 284
FspBI CTAG 1 cut(s) 41
GluI GCNGC 1 cut(s) 284
HaeIII GGCC 2 cut(s) 87, 283
HapII CCGG 1 cut(s) 14
Hin1II CATG 2 cut(s) 35, 391
HinfI GANTC 4 cut(s) 94, 142, 227, 293
HpaII CCGG 1 cut(s) 14
Hpy166II GTNNAC 1 cut(s) 38
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 4 cut(s) 155, 168, 302, 371
Hpy8I GTNNAC 1 cut(s) 38
HpyCH4V TGCA 2 cut(s) 38, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 2 cut(s) 166, 259
Hsp92II CATG 2 cut(s) 35, 391
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 2 cut(s) 111, 211
LpnPI CCDG 7 cut(s) 27, 140, 149, 153, 315, 356, 356
MaeI CTAG 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 235
MalI GATC 2 cut(s) 113, 213
MboI GATC 2 cut(s) 111, 211
MboII GAAGA 7 cut(s) 16, 151, 222, 317, 320, 392, 395
MfeI CAATTG 1 cut(s) 330
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 2 cut(s) 330, 353
MnlI CCTC 1 cut(s) 268
MspA1I CMGCKG 1 cut(s) 286
MspI CCGG 1 cut(s) 14
MunI CAATTG 1 cut(s) 330
MwoI GCNNNNNNNGC 1 cut(s) 23
NcoI CCATGG 1 cut(s) 31
NdeII GATC 2 cut(s) 111, 211
NlaIII CATG 2 cut(s) 35, 391
NlaIV GGNNCC 2 cut(s) 172, 204
PfeI GAWTC 4 cut(s) 94, 142, 227, 293
PkrI GCNGC 1 cut(s) 285
PspN4I GGNNCC 2 cut(s) 172, 204
PspPI GGNCC 1 cut(s) 281
SatI GCNGC 1 cut(s) 284
Sau3AI GATC 2 cut(s) 111, 211
Sau96I GGNCC 1 cut(s) 281
SduI GDGCHC 1 cut(s) 40
SetI ASST 1 cut(s) 260
SpeI ACTAGT 1 cut(s) 40
Sse9I AATT 2 cut(s) 330, 353
SsiI CCGC 1 cut(s) 284
SspI AATATT 1 cut(s) 349
SspMI CTAG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 31
TaqI TCGA 2 cut(s) 110, 243
TasI AATT 2 cut(s) 330, 353
TauI GCSGC 1 cut(s) 286
TfiI GAWTC 4 cut(s) 94, 142, 227, 293
TscAI CASTG 1 cut(s) 24
TspDTI ATGAA 3 cut(s) 17, 41, 194
TspRI CASTG 1 cut(s) 24
VneI GTGCAC 1 cut(s) 36
XapI RAATTY 1 cut(s) 353
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.