Rorug04G0305500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004511
Physical Location & Seq
Reverse (-)
48151631 .. 48157871
6241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0305500.1

Sequence Viewer

Length: 501 bp
ATGGCTCCCCAGTCTAAGTCCCAGCCACCACCACCGTCATCGGAGGACAAGACGGGGGCTCTGGATACTCCCCTTCGTGAAGTCGGGTTCGAGATTGAAGAAGTGACACCACAGAAGGTCTGTGGTTACCTCAGAGTCACCGAAAGGAACTGTCAGCCATTCAAAGTGTTACATGGAGGTGTGTCAGCTCTGATATCCGAGTCTCTGGCTAGCATGGGAGCTCACCTGGCTTCTGGTTTACAAAGGGTGGCTGGAATTCAGCTCAGCATCAACCACTTGAACCGAGCTGAGCTCGGTGATCTTATCTACACTGAAGCCTCACCCATCAGCGTTGGCAAAACCATTCAGGTTTGGGAGGTGCGACTTTCAAAGATGGATCCTTCAAACTCAGACATCAAATCCCTAGTATCATCATCAAGAGTTACTCTTCTGTGCAACATGCATGTGCCAGAGCATGCAAAAGATGCAGGTCAAGCCCTCAAGAAGTATGCCAAATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYRC

Protein Analysis

166

Amino Acids

17.93

Weight (kDa)

7.75

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
4HBT PF03061 55 - 124 2.8e-12 Thioesterase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 458
AclWI GGATC 2 cut(s) 371, 384
AcsI RAATTY 1 cut(s) 255
AcuI CTGAAG 1 cut(s) 333
AgsI TTSAA 5 cut(s) 98, 163, 280, 369, 384
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 5 cut(s) 188, 221, 262, 287, 292
AluI AGCT 5 cut(s) 188, 221, 262, 287, 292
Alw21I GWGCWC 2 cut(s) 223, 294
Alw26I GTCTC 1 cut(s) 207
AlwI GGATC 2 cut(s) 371, 384
ApoI RAATTY 1 cut(s) 255
AsuHPI GGTGA 4 cut(s) 130, 215, 308, 312
AsuNHI GCTAGC 1 cut(s) 209
BamHI GGATCC 1 cut(s) 376
BanII GRGCYC 3 cut(s) 61, 223, 294
Bbv12I GWGCWC 2 cut(s) 223, 294
BccI CCATC 2 cut(s) 332, 367
BciT130I CCWGG 1 cut(s) 227
BciVI GTATCC 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 2 cut(s) 210, 404
BfuAI ACCTGC 1 cut(s) 458
BfuI GTATCC 1 cut(s) 58
BlpI GCTNAGC 2 cut(s) 263, 288
Bme1390I CCNGG 1 cut(s) 227
BmiI GGNNCC 2 cut(s) 6, 378
BmrFI CCNGG 1 cut(s) 227
BmrI ACTGGG 1 cut(s) 4
BmsI GCATC 2 cut(s) 276, 454
BmtI GCTAGC 1 cut(s) 213
BmuI ACTGGG 1 cut(s) 4
BplI GAGNNNNNCTC 2 cut(s) 276, 308
Bpu1102I GCTNAGC 2 cut(s) 263, 288
BpuEI CTTGAG 1 cut(s) 464
Bse1I ACTGG 1 cut(s) 10
BseBI CCWGG 1 cut(s) 227
BseMII CTCAG 4 cut(s) 145, 277, 279, 402
BseNI ACTGG 1 cut(s) 10
BseYI CCCAGC 1 cut(s) 21
BsiHKAI GWGCWC 2 cut(s) 223, 294
BslFI GGGAC 1 cut(s) 4
BsmAI GTCTC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 4
Bsp1286I GDGCHC 3 cut(s) 61, 223, 294
Bsp143I GATC 2 cut(s) 298, 376
Bsp1720I GCTNAGC 2 cut(s) 263, 288
BspCNI CTCAG 4 cut(s) 144, 276, 280, 401
BspLI GGNNCC 2 cut(s) 6, 378
BspMI ACCTGC 1 cut(s) 458
BspOI GCTAGC 1 cut(s) 213
BspPI GGATC 2 cut(s) 371, 384
BsrI ACTGG 1 cut(s) 10
BssMI GATC 2 cut(s) 298, 376
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 2 cut(s) 36, 152
Bst6I CTCTTC 1 cut(s) 432
BstAPI GCANNNNNTGC 1 cut(s) 464
BstC8I GCNNGC 2 cut(s) 211, 456
BstDEI CTNAG 5 cut(s) 15, 131, 263, 288, 388
BstEII GGTNACC 1 cut(s) 125
BstKTI GATC 2 cut(s) 301, 379
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 2 cut(s) 298, 376
BstMWI GCNNNNNNNGC 3 cut(s) 227, 464, 473
BstNI CCWGG 1 cut(s) 227
BstNSI RCATGY 3 cut(s) 442, 446, 458
BstPI GGTNACC 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BsuI GTATCC 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 309
BveI ACCTGC 1 cut(s) 458
Cac8I GCNNGC 2 cut(s) 211, 456
CviAII CATG 5 cut(s) 173, 214, 439, 443, 455
DdeI CTNAG 5 cut(s) 15, 131, 263, 288, 388
DpnI GATC 2 cut(s) 300, 378
DpnII GATC 2 cut(s) 298, 376
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
Ecl136II GAGCTC 2 cut(s) 221, 292
Eco24I GRGCYC 3 cut(s) 61, 223, 294
Eco32I GATATC 1 cut(s) 195
Eco53kI GAGCTC 2 cut(s) 221, 292
Eco57I CTGAAG 1 cut(s) 333
Eco91I GGTNACC 1 cut(s) 125
EcoICRI GAGCTC 2 cut(s) 221, 292
EcoO65I GGTNACC 1 cut(s) 125
EcoRI GAATTC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 225
EcoRV GATATC 1 cut(s) 195
EcoT22I ATGCAT 1 cut(s) 444
EcoT38I GRGCYC 3 cut(s) 61, 223, 294
FaeI CATG 5 cut(s) 176, 217, 442, 446, 458
FaiI YATR 7 cut(s) 174, 215, 440, 444, 456, 489, 499
FaqI GGGAC 1 cut(s) 4
FatI CATG 5 cut(s) 172, 213, 438, 442, 454
FriOI GRGCYC 3 cut(s) 61, 223, 294
FspBI CTAG 2 cut(s) 210, 404
GsaI CCCAGC 1 cut(s) 25
Hin1II CATG 5 cut(s) 176, 217, 442, 446, 458
HinfI GANTC 2 cut(s) 135, 200
HphI GGTGA 4 cut(s) 130, 215, 308, 312
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 5 cut(s) 43, 134, 192, 199, 391
Hpy188III TCNNGA 5 cut(s) 62, 77, 91, 417, 481
Hpy8I GTNNAC 1 cut(s) 239
HpyAV CCTTC 3 cut(s) 83, 109, 390
HpyCH4III ACNGT 2 cut(s) 36, 152
HpyCH4V TGCA 4 cut(s) 435, 442, 458, 467
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 464, 473
HpyF3I CTNAG 5 cut(s) 15, 131, 263, 288, 388
Hsp92II CATG 5 cut(s) 176, 217, 442, 446, 458
Kzo9I GATC 2 cut(s) 298, 376
LmnI GCTCC 2 cut(s) 10, 218
LweI GCATC 2 cut(s) 276, 454
MaeI CTAG 2 cut(s) 210, 404
MaeIII GTNAC 5 cut(s) 103, 125, 136, 168, 421
MalI GATC 2 cut(s) 300, 378
MboI GATC 2 cut(s) 298, 376
MboII GAAGA 2 cut(s) 110, 419
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 3 cut(s) 61, 223, 294
MluCI AATT 2 cut(s) 255, 494
MlyI GAGTC 2 cut(s) 144, 209
MnlI CCTC 6 cut(s) 37, 140, 170, 328, 349, 488
Mph1103I ATGCAT 1 cut(s) 444
MslI CAYNNNNRTG 2 cut(s) 177, 443
MspR9I CCNGG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 227
MwoI GCNNNNNNNGC 3 cut(s) 227, 464, 473
NdeII GATC 2 cut(s) 298, 376
NheI GCTAGC 1 cut(s) 209
NlaIII CATG 5 cut(s) 176, 217, 442, 446, 458
NlaIV GGNNCC 2 cut(s) 6, 378
NmuCI GTSAC 2 cut(s) 103, 136
NsiI ATGCAT 1 cut(s) 444
NspI RCATGY 3 cut(s) 442, 446, 458
PaeI GCATGC 1 cut(s) 458
PleI GAGTC 2 cut(s) 143, 208
PpsI GAGTC 2 cut(s) 143, 208
Psp124BI GAGCTC 2 cut(s) 223, 294
Psp6I CCWGG 1 cut(s) 225
PspEI GGTNACC 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 21
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 2 cut(s) 6, 378
PsuI RGATCY 1 cut(s) 376
RseI CAYNNNNRTG 2 cut(s) 177, 443
SacI GAGCTC 2 cut(s) 223, 294
Sau3AI GATC 2 cut(s) 298, 376
SchI GAGTC 2 cut(s) 144, 209
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 3 cut(s) 61, 223, 294
SfaNI GCATC 2 cut(s) 276, 454
SmiMI CAYNNNNRTG 2 cut(s) 177, 443
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
SphI GCATGC 1 cut(s) 458
Sse9I AATT 2 cut(s) 255, 494
SspMI CTAG 2 cut(s) 210, 404
SstI GAGCTC 2 cut(s) 223, 294
StyD4I CCNGG 1 cut(s) 225
TaaI ACNGT 2 cut(s) 36, 152
TaqI TCGA 1 cut(s) 90
TasI AATT 2 cut(s) 255, 494
TscAI CASTG 1 cut(s) 316
TseFI GTSAC 2 cut(s) 103, 136
Tsp45I GTSAC 2 cut(s) 103, 136
TspRI CASTG 1 cut(s) 316
XapI RAATTY 1 cut(s) 255
XceI RCATGY 3 cut(s) 442, 446, 458
XspI CTAG 2 cut(s) 210, 404
Zsp2I ATGCAT 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.