Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004511

Physical Location & Seq

Genomic Coordinates Forward (+)

3346942 .. 3348550

Gene Structure 1609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGATATGTTCCTCTGATAAGGCTGAAGCTGATGAAGATAGTTCTGATGATGCATGCCTTCTCAACAGTTATGGGCAAGTTGTTTCTGTTAATAAGCATAAAAAATCTTTAGATAATCATCTTGAGATCAATGGAAGCAAATATATCTTTCCCTATAAGGATGTATGCATGGATTCTACTGGGAGGCTTGAGGAATGTGACACATACATATCTGGGTCTATACCAGTTTGTACATCTCCTCATAACAGAGTCGTTTCTGAAGAAATCAGGGATGAATTTGCTAATAGGGATGGATGCTCACTCGGTGTTATCCAATCTAAGCAAAGCAATGAAACTTCAGTTAATCTCCCTGAAGATGTAATTGATGATAACCAAAGAGGCATGTTGAATTCTTCAAAAACATCAGAGAATGAAAATGCTGATAAGAGAACTGTTGCAGAAATTGGAAATGAGTCGTTTACTAAAGTTTCAAACTTAGTATATACCAGGAGGAAAGTTCACAAAGGAAACTACAGTGCTCCGTTCTCAGAGAGTATAGTATGCAGAAATAATGGTGATATTTATGTGCCTGAATCATACCCTTCCACAGAGACTTTGCTTGCGTTGGAGACTTTGCAAATGGGTTCTTCTGATGACACTTCAAATAAGATAGATTCATTCTGTGCTGAAGCCAAGATTGGGGGACATTCCAGTTGTTTGAATGCAGAGAAACCTTCCACAATATCTAAAGGTCCCATAAACAGTAGTGTTCCTGCTGCATTACAAGATCAAGCATTATTTGTTGCCTCTGGAGAAAAAGATACTTCGTACTCACTTGATTTGCCTGTTTCACGTGTAGAAAACCATGTTGACAAGGATGTGGTTGAACACGAGAACCTCCTCAAGTTAAACAACTCTGAAACATCTCAGAAACAGGGGATGAGCATCATTCATGATCACAATAGTATTCCACATCATTCAGACTCGAAGTCTCACAGTATGGAATTTAATAACGAACTAGCGGGCAATCTTGAGTTTGTGGGATGTTATTCCCATCAAAGTCCTGTTTTGTCAGCATTGTTGAGTGCAAAGGGGACTGAAACTTACGTTTGTGTTTTATGTGGCCATCTGGTTGACAAGGACGGAAGCCTATTCATCTACAAGATACAAATTGAGGGACCACGTGTTGGATGCCCTTCTTTTGTTGGTCACACATCCGTAACATGGCCCATGCGAAAAGACTACTTTGGTAAAGTAAGTTCTTGTATTCATTTGGCTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYRC

Protein Analysis

421

Amino Acids

46.07

Weight (kDa)

5.15

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26330 AT1G26330
fragaria_vesca	FvH4_4g29660 FvH4_4g29660 FvH4_4g29660 FvH4_4g29660 FvH4_4g29660 FvH4_4g29660 FvH4_4g29660 FvH4_4g29660 FvH4_4g29660 FvH4_4g29660 FvH4_4g29660 FvH4_4g29660 FvH4_4g29660 FvH4_7g33791
malus_domestica	MD16G1059100.v1.1
prunus_persica	Prupe.1G290000_v2.0.a1
pyrus_communis	pycom16g05150
rosa_chinensis	RchiOBHm_Chr4g0437911
rosa_laevigata	RLG00000006401
rosa_multiflora	Rmu_sc0008907.1_g000008
rosa_roxburghii	Rroxscaffold_5G00379080
rosa_rugosa	Rorug04G0305500 Rorug04G0305600
rosa_samantha	Rh4AG357200 Rh4BG368100 Rh4CG382100 Rh4DG362900 Rh7CG239700
rosa_wichuraiana	Rw0G011550 Rw0G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1166
AciI	CCGC	1 cut(s)	1001
AcoI	YGGCCR	1 cut(s)	1102
AcsI	RAATTY	3 cut(s)	275, 388, 983
AcuI	CTGAAG	5 cut(s)	45, 279, 321, 372, 687
AcvI	CACGTG	2 cut(s)	833, 1163
AdeI	CACNNNGTG	1 cut(s)	305
AfaI	GTAC	2 cut(s)	232, 809
AfiI	CCNNNNNNNGG	3 cut(s)	678, 1166, 1203
AflIII	ACRYGT	2 cut(s)	832, 1162
AgsI	TTSAA	6 cut(s)	388, 396, 471, 642, 700, 866
AhdI	GACNNNNNGTC	1 cut(s)	967
AjnI	CCWGG	1 cut(s)	485
AjuI	GAANNNNNNNTTGG	2 cut(s)	660, 692
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	3 cut(s)	584, 602, 975
AoxI	GGCC	2 cut(s)	1102, 1205
ApeKI	GCWGC	1 cut(s)	755
ApoI	RAATTY	3 cut(s)	275, 388, 983
AspS9I	GGNCC	3 cut(s)	731, 1157, 1206
AsuHPI	GGTGA	1 cut(s)	566
AvaII	GGWCC	2 cut(s)	731, 1157
BalI	TGGCCA	1 cut(s)	1104
BauI	CACGAG	1 cut(s)	869
BbrPI	CACGTG	2 cut(s)	833, 1163
Bbv12I	GWGCWC	1 cut(s)	520
BbvI	GCAGC	1 cut(s)	742
BccI	CCATC	3 cut(s)	284, 1041, 1113
BciT130I	CCWGG	1 cut(s)	487
BclI	TGATCA	1 cut(s)	934
BcoDI	GTCTC	3 cut(s)	584, 602, 975
BfaI	CTAG	1 cut(s)	998
BfmI	CTRYAG	1 cut(s)	511
BisI	GCNGC	1 cut(s)	756
BlsI	GCNGC	1 cut(s)	757
Bme1390I	CCNGG	1 cut(s)	487
Bme18I	GGWCC	2 cut(s)	731, 1157
BmeRI	GACNNNNNGTC	1 cut(s)	967
BmgT120I	GGNCC	3 cut(s)	731, 1157, 1206
BmiI	GGNNCC	2 cut(s)	733, 1158
BmrFI	CCNGG	1 cut(s)	487
BmrI	ACTGGG	1 cut(s)	189
BmsI	GCATC	4 cut(s)	40, 284, 933, 1160
BmuI	ACTGGG	1 cut(s)	189
BpmI	CTGGAG	1 cut(s)	810
BpuEI	CTTGAG	4 cut(s)	143, 209, 866, 1031
BsaAI	YACGTR	2 cut(s)	833, 1163
BsaBI	GATNNNNATC	2 cut(s)	117, 923
Bsc4I	CCNNNNNNNGG	3 cut(s)	678, 1166, 1203
Bse1I	ACTGG	3 cut(s)	184, 224, 690
Bse3DI	GCAATG	1 cut(s)	334
Bse8I	GATNNNNATC	2 cut(s)	117, 923
BseBI	CCWGG	1 cut(s)	487
BseGI	GGATG	9 cut(s)	166, 277, 295, 299, 862, 924, 1028, 1175, 1193
BseJI	GATNNNNATC	2 cut(s)	117, 923
BseLI	CCNNNNNNNGG	3 cut(s)	678, 1166, 1203
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	2 cut(s)	540, 920
BseNI	ACTGG	3 cut(s)	184, 224, 690
BseRI	GAGGAG	2 cut(s)	228, 869
BseXI	GCAGC	1 cut(s)	742
BshFI	GGCC	2 cut(s)	1104, 1207
BsiHKAI	GWGCWC	1 cut(s)	520
BslFI	GGGAC	4 cut(s)	696, 717, 1087, 1170
BslI	CCNNNNNNNGG	3 cut(s)	678, 1166, 1203
BsmAI	GTCTC	3 cut(s)	584, 602, 975
BsmFI	GGGAC	4 cut(s)	696, 717, 1087, 1170
BsmI	GAATGC	1 cut(s)	706
BsnI	GGCC	2 cut(s)	1104, 1207
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp1407I	TGTACA	1 cut(s)	230
Bsp143I	GATC	3 cut(s)	126, 766, 934
BspACI	CCGC	1 cut(s)	1001
BspANI	GGCC	2 cut(s)	1104, 1207
BspCNI	CTCAG	2 cut(s)	539, 919
BspHI	TCATGA	1 cut(s)	931
BspLI	GGNNCC	2 cut(s)	733, 1158
BsrDI	GCAATG	1 cut(s)	334
BsrGI	TGTACA	1 cut(s)	230
BsrI	ACTGG	3 cut(s)	184, 224, 690
BssMI	GATC	3 cut(s)	126, 766, 934
BssSI	CACGAG	1 cut(s)	869
Bst2BI	CACGAG	1 cut(s)	869
Bst2UI	CCWGG	1 cut(s)	487
Bst4CI	ACNGT	5 cut(s)	68, 433, 515, 743, 977
BstAUI	TGTACA	1 cut(s)	230
BstBAI	YACGTR	2 cut(s)	833, 1163
BstC8I	GCNNGC	3 cut(s)	55, 600, 1003
BstDEI	CTNAG	4 cut(s)	318, 475, 526, 906
BstF5I	GGATG	9 cut(s)	166, 277, 295, 299, 862, 924, 1028, 1175, 1193
BstKTI	GATC	3 cut(s)	129, 769, 937
BstMAI	GTCTC	3 cut(s)	584, 602, 975
BstMBI	GATC	3 cut(s)	126, 766, 934
BstNI	CCWGG	1 cut(s)	487
BstNSI	RCATGY	2 cut(s)	57, 385
BstSCI	CCNGG	1 cut(s)	485
BstSFI	CTRYAG	1 cut(s)	511
BstV1I	GCAGC	1 cut(s)	742
BsuRI	GGCC	2 cut(s)	1104, 1207
BtsCI	GGATG	9 cut(s)	166, 277, 295, 299, 862, 924, 1028, 1175, 1193
BtsIMutI	CAGTG	1 cut(s)	520
Cac8I	GCNNGC	3 cut(s)	55, 600, 1003
CciI	TCATGA	1 cut(s)	931
Cfr13I	GGNCC	3 cut(s)	731, 1157, 1206
Csp6I	GTAC	2 cut(s)	231, 808
CviAII	CATG	7 cut(s)	54, 169, 382, 845, 932, 1203, 1210
CviJI	RGCY	8 cut(s)	23, 29, 187, 671, 1104, 1128, 1207, 1256
CviKI_1	RGCY	8 cut(s)	23, 29, 187, 671, 1104, 1128, 1207, 1256
CviQI	GTAC	2 cut(s)	231, 808
DdeI	CTNAG	4 cut(s)	318, 475, 526, 906
DpnI	GATC	3 cut(s)	128, 768, 936
DpnII	GATC	3 cut(s)	126, 766, 934
DraIII	CACNNNGTG	1 cut(s)	305
DriI	GACNNNNNGTC	1 cut(s)	967
EaeI	YGGCCR	1 cut(s)	1102
Eam1105I	GACNNNNNGTC	1 cut(s)	967
Eco47I	GGWCC	2 cut(s)	731, 1157
Eco57I	CTGAAG	5 cut(s)	45, 279, 321, 372, 687
Eco72I	CACGTG	2 cut(s)	833, 1163
EcoO109I	RGGNCCY	1 cut(s)	731
EcoRI	GAATTC	1 cut(s)	388
EcoRII	CCWGG	1 cut(s)	485
EcoT22I	ATGCAT	2 cut(s)	55, 170
FaeI	CATG	7 cut(s)	57, 172, 385, 848, 935, 1206, 1213
FaqI	GGGAC	4 cut(s)	696, 717, 1087, 1170
FatI	CATG	7 cut(s)	53, 168, 381, 844, 931, 1202, 1209
FauI	CCCGC	1 cut(s)	994
FbaI	TGATCA	1 cut(s)	934
Fnu4HI	GCNGC	1 cut(s)	756
FokI	GGATG	9 cut(s)	173, 284, 302, 306, 869, 931, 1035, 1180, 1182
Fsp4HI	GCNGC	1 cut(s)	756
FspBI	CTAG	1 cut(s)	998
GluI	GCNGC	1 cut(s)	756
GsuI	CTGGAG	1 cut(s)	810
HaeIII	GGCC	2 cut(s)	1104, 1207
Hin1II	CATG	7 cut(s)	57, 172, 385, 848, 935, 1206, 1213
HincII	GTYRAC	2 cut(s)	850, 1114
HindII	GTYRAC	2 cut(s)	850, 1114
HinfI	GANTC	6 cut(s)	173, 249, 452, 572, 653, 962
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	4 cut(s)	459, 499, 850, 1114
Hpy188I	TCNGA	9 cut(s)	16, 46, 259, 406, 529, 631, 898, 909, 961
Hpy188III	TCNNGA	4 cut(s)	122, 789, 932, 1010
Hpy8I	GTNNAC	4 cut(s)	459, 499, 850, 1114
HpyAV	CCTTC	4 cut(s)	68, 591, 723, 1185
HpyCH4III	ACNGT	5 cut(s)	68, 433, 515, 743, 977
HpyCH4IV	ACGT	3 cut(s)	832, 1086, 1162
HpyCH4V	TGCA	8 cut(s)	53, 168, 437, 543, 616, 704, 758, 1067
HpyF3I	CTNAG	4 cut(s)	318, 475, 526, 906
HpySE526I	ACGT	3 cut(s)	832, 1086, 1162
Hsp92II	CATG	7 cut(s)	57, 172, 385, 848, 935, 1206, 1213
Ksp22I	TGATCA	1 cut(s)	934
Kzo9I	GATC	3 cut(s)	126, 766, 934
LmnI	GCTCC	1 cut(s)	523
Lsp1109I	GCAGC	1 cut(s)	742
LweI	GCATC	4 cut(s)	40, 284, 933, 1160
MaeI	CTAG	1 cut(s)	998
MaeII	ACGT	3 cut(s)	832, 1086, 1162
MaeIII	GTNAC	3 cut(s)	197, 1187, 1198
MalI	GATC	3 cut(s)	128, 768, 936
MboI	GATC	3 cut(s)	126, 766, 934
MboII	GAAGA	5 cut(s)	47, 272, 365, 384, 618
MhlI	GDGCHC	1 cut(s)	520
MlsI	TGGCCA	1 cut(s)	1104
MluCI	AATT	6 cut(s)	275, 360, 388, 441, 983, 1149
MluNI	TGGCCA	1 cut(s)	1104
MlyI	GAGTC	3 cut(s)	258, 461, 956
MmeI	TCCRAC	2 cut(s)	585, 1147
Mox20I	TGGCCA	1 cut(s)	1104
Mph1103I	ATGCAT	2 cut(s)	55, 170
MscI	TGGCCA	1 cut(s)	1104
MseI	TTAA	4 cut(s)	90, 342, 887, 987
Msp20I	TGGCCA	1 cut(s)	1104
MspR9I	CCNGG	1 cut(s)	487
Mva1269I	GAATGC	1 cut(s)	706
MvaI	CCWGG	1 cut(s)	487
NdeII	GATC	3 cut(s)	126, 766, 934
NlaIII	CATG	7 cut(s)	57, 172, 385, 848, 935, 1206, 1213
NlaIV	GGNNCC	2 cut(s)	733, 1158
NmuCI	GTSAC	2 cut(s)	197, 1187
NsiI	ATGCAT	2 cut(s)	55, 170
NspI	RCATGY	2 cut(s)	57, 385
PaeI	GCATGC	1 cut(s)	57
PagI	TCATGA	1 cut(s)	931
PctI	GAATGC	1 cut(s)	706
PfeI	GAWTC	3 cut(s)	173, 572, 653
PflMI	CCANNNNNTGG	1 cut(s)	1166
PkrI	GCNGC	1 cut(s)	757
PleI	GAGTC	3 cut(s)	257, 460, 956
PmaCI	CACGTG	2 cut(s)	833, 1163
PmlI	CACGTG	2 cut(s)	833, 1163
PpsI	GAGTC	3 cut(s)	257, 460, 956
Ppu21I	YACGTR	2 cut(s)	833, 1163
PpuMI	RGGWCCY	1 cut(s)	731
Psp5II	RGGWCCY	1 cut(s)	731
Psp6I	CCWGG	1 cut(s)	485
PspCI	CACGTG	2 cut(s)	833, 1163
PspGI	CCWGG	1 cut(s)	485
PspN4I	GGNNCC	2 cut(s)	733, 1158
PspPI	GGNCC	3 cut(s)	731, 1157, 1206
PspPPI	RGGWCCY	1 cut(s)	731
PsrI	GAACNNNNNNTAC	2 cut(s)	1222, 1254
RsaI	GTAC	2 cut(s)	232, 809
RsaNI	GTAC	2 cut(s)	231, 808
SaqAI	TTAA	4 cut(s)	90, 342, 887, 987
SatI	GCNGC	1 cut(s)	756
Sau3AI	GATC	3 cut(s)	126, 766, 934
Sau96I	GGNCC	3 cut(s)	731, 1157, 1206
SchI	GAGTC	3 cut(s)	258, 461, 956
ScrFI	CCNGG	1 cut(s)	487
SduI	GDGCHC	1 cut(s)	520
SetI	ASST	7 cut(s)	31, 715, 733, 835, 879, 1089, 1165
SfaNI	GCATC	4 cut(s)	40, 284, 933, 1160
SfcI	CTRYAG	1 cut(s)	511
SinI	GGWCC	2 cut(s)	731, 1157
SmlI	CTYRAG	4 cut(s)	122, 188, 881, 1010
SmoI	CTYRAG	4 cut(s)	122, 188, 881, 1010
SphI	GCATGC	1 cut(s)	57
Sse9I	AATT	6 cut(s)	275, 360, 388, 441, 983, 1149
SsiI	CCGC	1 cut(s)	1001
SspMI	CTAG	1 cut(s)	998
StyD4I	CCNGG	1 cut(s)	485
TaaI	ACNGT	5 cut(s)	68, 433, 515, 743, 977
TaiI	ACGT	3 cut(s)	835, 1089, 1165
TaqI	TCGA	1 cut(s)	965
TasI	AATT	6 cut(s)	275, 360, 388, 441, 983, 1149
TatI	WGTACW	1 cut(s)	230
TfiI	GAWTC	3 cut(s)	173, 572, 653
Tru1I	TTAA	4 cut(s)	90, 342, 887, 987
Tru9I	TTAA	4 cut(s)	90, 342, 887, 987
TscAI	CASTG	1 cut(s)	520
TseFI	GTSAC	2 cut(s)	197, 1187
TseI	GCWGC	1 cut(s)	755
Tsp45I	GTSAC	2 cut(s)	197, 1187
TspDTI	ATGAA	8 cut(s)	48, 288, 345, 426, 645, 920, 1123, 1238
TspGWI	ACGGA	3 cut(s)	510, 1137, 1186
TspRI	CASTG	1 cut(s)	520
Van91I	CCANNNNNTGG	1 cut(s)	1166
VpaK11BI	GGWCC	2 cut(s)	731, 1157
XapI	RAATTY	3 cut(s)	275, 388, 983
XceI	RCATGY	2 cut(s)	57, 385
XspI	CTAG	1 cut(s)	998
Zsp2I	ATGCAT	2 cut(s)	55, 170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.