Rh7CG239700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004511
Physical Location & Seq
Forward (+)
22371812 .. 22380832
9021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG239700.1

Sequence Viewer

Length: 1209 bp
ATGGCTTCAACTGGGAGGCTTCAGGAATGTGGCCAGTACATATTTGAGTCTCTTCCAATTCGTGCAACTCCACATAAAAAAGTCTTTTCCGAAGAAATCACGGAGAAGTTCCATATCGATGAATGCCCAGTAAGTATTACTCTTAGTTCTAAGAAAATGAATGAAACTGCAGCTGATCCTACCAAAGATATTGTTGATGATAACCAAAGAGGCATGTTAAATTCTTCAAATATACCAGAGAAGGAAACTGCTGCTAAGACATTGTCTACCAAAACTGAAAATCTATCTTTTTATCAAGTTCCCAAGTTAGTGTATACCAGGAAAAAGGTTCAGACTGTATCTCATATGAAAGGCAATAATAGTGGTCCAGTCTCAAAAAGTATAATATACAAGAACAATGTACCTGAGACATATCCTTCCACAGAAACTCTGCAGGTGGGTTCTTCTGATGACAATTCAAATAAAAGGGATTCATTTTGTGCTGAAGCCAAGATTGTTGGACGCTCCAATTTGACTGCAGAGAAACCTTCGATGAATTCTAAAGCTGTATTAAACAGCTTGGGTCCAGCTGTATTACAAGATCAAGCATTATTAGTTGGTGAGAAAGATACTTCATACTCTCGTGATTTGTTTGTCTCACATTTAGAAGACCAGGTTGACAAGAATGTGGTTGGCCATGAAAACCTCCTACAGTTCAAAGACTCTGAAACATCTCATAAACATGGGCCGAGTTTAAGTTGTGATCCCAATAGCATTCCATTTAGTTCAGATTTGAAGCCTCACAATATGGAACTTAATAATGGGCTAGCGGGGATTCTTAAGCTTGTGGGATGCTATACGCATCATGTTCCTGTTTTGTCAGTGTTGTTGAGCACAAAGGGAAATCACATTTACATTTGTGTTTTGTGTGGCCTACTGGTTGGTAAGGACATCAGCCTGTTCATCTACAAGGTAGACATTGAGGAACCGAAGGTTGGACACCCTTTTCTTGTTGGTCACACATCAGTAACTTTGCCGGATCTAACTGATTATTTTGGTGGAATGGCTTTGGGAAGATCCTGTCTACAATTGACCCCAGATGGACAGTGTCTTGTTTTACTTAACAGTATAAAAACTCCTTTCTGCAGGCAAGGAAAAACCCGTTGTTTGTGCACCACATGTGCGTCAAGTTGTTCTGAGGAGAATGTTGTTAAGATTGTCCAAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYRC

Protein Analysis

402

Amino Acids

44.01

Weight (kDa)

6.67

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 424
Acc36I ACCTGC 1 cut(s) 424
AccI GTMKAC 4 cut(s) 266, 314, 954, 1063
AciI CCGC 1 cut(s) 809
AclWI GGATC 4 cut(s) 170, 737, 1026, 1050
AcoI YGGCCR 2 cut(s) 31, 673
AcsI RAATTY 2 cut(s) 220, 535
AcuI CTGAAG 2 cut(s) 5, 504
AfaI GTAC 2 cut(s) 38, 402
AfiI CCNNNNNNNGG 1 cut(s) 974
AflII CTTAAG 1 cut(s) 818
AflIII ACRYGT 1 cut(s) 1157
AgsI TTSAA 5 cut(s) 9, 228, 459, 697, 775
AjnI CCWGG 2 cut(s) 317, 651
AjuI GAANNNNNNNTTGG 2 cut(s) 957, 989
AluBI AGCT 5 cut(s) 173, 545, 558, 569, 823
AluI AGCT 5 cut(s) 173, 545, 558, 569, 823
Alw21I GWGCWC 2 cut(s) 875, 1154
Alw26I GTCTC 4 cut(s) 54, 376, 401, 640
Alw44I GTGCAC 1 cut(s) 1150
AlwI GGATC 4 cut(s) 170, 737, 1026, 1050
AoxI GGCC 4 cut(s) 31, 673, 725, 910
ApaLI GTGCAC 1 cut(s) 1150
ApeKI GCWGC 2 cut(s) 170, 251
ApoI RAATTY 2 cut(s) 220, 535
AspS9I GGNCC 3 cut(s) 365, 563, 725
AsuHPI GGTGA 1 cut(s) 611
AsuNHI GCTAGC 1 cut(s) 805
AvaII GGWCC 2 cut(s) 365, 563
BaeGI GKGCMC 1 cut(s) 1154
BalI TGGCCA 2 cut(s) 33, 675
BauI CACGAG 1 cut(s) 621
BbsI GAAGAC 1 cut(s) 654
Bbv12I GWGCWC 2 cut(s) 875, 1154
BbvI GCAGC 2 cut(s) 182, 238
BccI CCATC 1 cut(s) 1073
BciT130I CCWGG 2 cut(s) 319, 653
BcoDI GTCTC 4 cut(s) 54, 376, 401, 640
BfaI CTAG 1 cut(s) 806
BfmI CTRYAG 5 cut(s) 168, 431, 516, 689, 1123
BfrI CTTAAG 1 cut(s) 818
BfuAI ACCTGC 1 cut(s) 424
BisI GCNGC 2 cut(s) 171, 252
BlsI GCNGC 2 cut(s) 172, 253
Bme1390I CCNGG 2 cut(s) 319, 653
Bme18I GGWCC 2 cut(s) 365, 563
BmgT120I GGNCC 3 cut(s) 365, 563, 725
BmiI GGNNCC 2 cut(s) 564, 966
BmrFI CCNGG 2 cut(s) 319, 653
BmrI ACTGGG 2 cut(s) 21, 122
BmsI GCATC 2 cut(s) 821, 850
BmtI GCTAGC 1 cut(s) 809
BmuI ACTGGG 2 cut(s) 21, 122
BpiI GAAGAC 1 cut(s) 654
Bsa29I ATCGAT 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 1201
Bsc4I CCNNNNNNNGG 1 cut(s) 974
Bse1I ACTGG 5 cut(s) 16, 34, 128, 368, 921
BseBI CCWGG 2 cut(s) 319, 653
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 1201
BseGI GGATG 1 cut(s) 836
BseLI CCNNNNNNNGG 1 cut(s) 974
BseMII CTCAG 2 cut(s) 396, 1167
BseNI ACTGG 5 cut(s) 16, 34, 128, 368, 921
BseRI GAGGAG 1 cut(s) 1193
BseSI GKGCMC 1 cut(s) 1154
BseXI GCAGC 2 cut(s) 182, 238
BshFI GGCC 4 cut(s) 33, 675, 727, 912
BshVI ATCGAT 1 cut(s) 117
BsiHKAI GWGCWC 2 cut(s) 875, 1154
BsiSI CCGG 1 cut(s) 1016
BslI CCNNNNNNNGG 1 cut(s) 974
BsmAI GTCTC 4 cut(s) 54, 376, 401, 640
BsmI GAATGC 2 cut(s) 128, 753
BsnI GGCC 4 cut(s) 33, 675, 727, 912
Bsp1286I GDGCHC 2 cut(s) 875, 1154
Bsp143I GATC 5 cut(s) 175, 580, 742, 1018, 1055
BspACI CCGC 1 cut(s) 809
BspANI GGCC 4 cut(s) 33, 675, 727, 912
BspCNI CTCAG 2 cut(s) 397, 1168
BspDI ATCGAT 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 564, 966
BspMAI CTGCAG 4 cut(s) 172, 435, 520, 1127
BspMI ACCTGC 1 cut(s) 424
BspOI GCTAGC 1 cut(s) 809
BspPI GGATC 4 cut(s) 170, 737, 1026, 1050
BspTI CTTAAG 1 cut(s) 818
BsrI ACTGG 5 cut(s) 16, 34, 128, 368, 921
BssECI CCNNGG 1 cut(s) 1201
BssMI GATC 5 cut(s) 175, 580, 742, 1018, 1055
BssNAI GTATAC 1 cut(s) 315
BssSI CACGAG 1 cut(s) 621
BssT1I CCWWGG 1 cut(s) 1201
Bst1107I GTATAC 1 cut(s) 315
Bst2BI CACGAG 1 cut(s) 621
Bst2UI CCWGG 2 cut(s) 319, 653
Bst4CI ACNGT 4 cut(s) 337, 693, 1086, 1106
Bst6I CTCTTC 1 cut(s) 57
BstAFI CTTAAG 1 cut(s) 818
BstC8I GCNNGC 2 cut(s) 807, 1127
BstDEI CTNAG 5 cut(s) 143, 150, 255, 405, 1176
BstF5I GGATG 1 cut(s) 836
BstKTI GATC 5 cut(s) 178, 583, 745, 1021, 1058
BstMAI GTCTC 4 cut(s) 54, 376, 401, 640
BstMBI GATC 5 cut(s) 175, 580, 742, 1018, 1055
BstNI CCWGG 2 cut(s) 319, 653
BstNSI RCATGY 2 cut(s) 217, 1161
BstSCI CCNGG 2 cut(s) 317, 651
BstSFI CTRYAG 5 cut(s) 168, 431, 516, 689, 1123
BstSLI GKGCMC 1 cut(s) 1154
BstV1I GCAGC 2 cut(s) 182, 238
BstV2I GAAGAC 1 cut(s) 654
BstX2I RGATCY 2 cut(s) 1018, 1055
BstYI RGATCY 2 cut(s) 1018, 1055
BstZ17I GTATAC 1 cut(s) 315
Bsu15I ATCGAT 1 cut(s) 117
BsuRI GGCC 4 cut(s) 33, 675, 727, 912
BsuTUI ATCGAT 1 cut(s) 117
BtsCI GGATG 1 cut(s) 836
BtsIMutI CAGTG 2 cut(s) 867, 1091
BveI ACCTGC 1 cut(s) 424
Cac8I GCNNGC 2 cut(s) 807, 1127
Cfr13I GGNCC 3 cut(s) 365, 563, 725
ClaI ATCGAT 1 cut(s) 117
CseI GACGC 2 cut(s) 510, 1152
CsiI ACCWGGT 1 cut(s) 651
Csp6I GTAC 2 cut(s) 37, 401
CspCI CAANNNNNGTGG 2 cut(s) 343, 378
CviAII CATG 5 cut(s) 214, 677, 722, 845, 1158
CviQI GTAC 2 cut(s) 37, 401
DdeI CTNAG 5 cut(s) 143, 150, 255, 405, 1176
DpnI GATC 5 cut(s) 177, 582, 744, 1020, 1057
DpnII GATC 5 cut(s) 175, 580, 742, 1018, 1055
EaeI YGGCCR 2 cut(s) 31, 673
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 1201
Eco47I GGWCC 2 cut(s) 365, 563
Eco57I CTGAAG 2 cut(s) 5, 504
EcoRI GAATTC 1 cut(s) 535
EcoRII CCWGG 2 cut(s) 317, 651
EcoT14I CCWWGG 1 cut(s) 1201
ErhI CCWWGG 1 cut(s) 1201
FaeI CATG 5 cut(s) 217, 680, 725, 848, 1161
FatI CATG 5 cut(s) 213, 676, 721, 844, 1157
FauI CCCGC 1 cut(s) 802
FauNDI CATATG 1 cut(s) 345
FblI GTMKAC 4 cut(s) 266, 314, 954, 1063
Fnu4HI GCNGC 2 cut(s) 171, 252
FokI GGATG 1 cut(s) 843
Fsp4HI GCNGC 2 cut(s) 171, 252
FspBI CTAG 1 cut(s) 806
GluI GCNGC 2 cut(s) 171, 252
HaeIII GGCC 4 cut(s) 33, 675, 727, 912
HapII CCGG 1 cut(s) 1016
HgaI GACGC 2 cut(s) 510, 1152
Hin1II CATG 5 cut(s) 217, 680, 725, 848, 1161
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HindIII AAGCTT 1 cut(s) 821
HinfI GANTC 4 cut(s) 47, 470, 701, 814
HpaII CCGG 1 cut(s) 1016
HphI GGTGA 1 cut(s) 611
Hpy166II GTNNAC 6 cut(s) 267, 315, 658, 955, 1064, 1152
Hpy188I TCNGA 6 cut(s) 91, 333, 448, 706, 769, 1177
Hpy188III TCNNGA 2 cut(s) 23, 623
Hpy8I GTNNAC 6 cut(s) 267, 315, 658, 955, 1064, 1152
HpyAV CCTTC 4 cut(s) 235, 426, 537, 964
HpyCH4III ACNGT 4 cut(s) 337, 693, 1086, 1106
HpyCH4V TGCA 6 cut(s) 65, 170, 433, 518, 1125, 1152
HpyF3I CTNAG 5 cut(s) 143, 150, 255, 405, 1176
Hsp92II CATG 5 cut(s) 217, 680, 725, 848, 1161
Kzo9I GATC 5 cut(s) 175, 580, 742, 1018, 1055
LmnI GCTCC 1 cut(s) 509
Lsp1109I GCAGC 2 cut(s) 182, 238
LweI GCATC 2 cut(s) 821, 850
MabI ACCWGGT 1 cut(s) 651
MaeI CTAG 1 cut(s) 806
MaeIII GTNAC 2 cut(s) 995, 1006
MalI GATC 5 cut(s) 177, 582, 744, 1020, 1057
MboI GATC 5 cut(s) 175, 580, 742, 1018, 1055
MboII GAAGA 6 cut(s) 44, 104, 216, 435, 659, 1065
MfeI CAATTG 1 cut(s) 1067
MflI RGATCY 2 cut(s) 1018, 1055
MhlI GDGCHC 2 cut(s) 875, 1154
MlsI TGGCCA 2 cut(s) 33, 675
MluCI AATT 6 cut(s) 57, 220, 454, 508, 535, 1067
MluNI TGGCCA 2 cut(s) 33, 675
MlyI GAGTC 2 cut(s) 56, 695
MmeI TCCRAC 2 cut(s) 478, 955
MnlI CCTC 6 cut(s) 9, 203, 695, 789, 955, 1171
Mox20I TGGCCA 2 cut(s) 33, 675
MscI TGGCCA 2 cut(s) 33, 675
MseI TTAA 7 cut(s) 218, 551, 734, 795, 819, 1101, 1191
MslI CAYNNNNRTG 2 cut(s) 117, 720
Msp20I TGGCCA 2 cut(s) 33, 675
MspA1I CMGCKG 2 cut(s) 173, 569
MspCI CTTAAG 1 cut(s) 818
MspI CCGG 1 cut(s) 1016
MspR9I CCNGG 2 cut(s) 319, 653
MunI CAATTG 1 cut(s) 1067
Mva1269I GAATGC 2 cut(s) 128, 753
MvaI CCWGG 2 cut(s) 319, 653
NdeI CATATG 1 cut(s) 345
NdeII GATC 5 cut(s) 175, 580, 742, 1018, 1055
NheI GCTAGC 1 cut(s) 805
NlaIII CATG 5 cut(s) 217, 680, 725, 848, 1161
NlaIV GGNNCC 2 cut(s) 564, 966
NmeAIII GCCGAG 1 cut(s) 753
NmuCI GTSAC 1 cut(s) 995
NspI RCATGY 2 cut(s) 217, 1161
PaqCI CACCTGC 1 cut(s) 424
PciI ACATGT 1 cut(s) 1157
PctI GAATGC 2 cut(s) 128, 753
PfeI GAWTC 2 cut(s) 470, 814
PflFI GACNNNGTC 2 cut(s) 262, 1086
PkrI GCNGC 2 cut(s) 172, 253
PleI GAGTC 2 cut(s) 55, 695
PpsI GAGTC 2 cut(s) 55, 695
PscI ACATGT 1 cut(s) 1157
Psp6I CCWGG 2 cut(s) 317, 651
PspGI CCWGG 2 cut(s) 317, 651
PspN4I GGNNCC 2 cut(s) 564, 966
PspPI GGNCC 3 cut(s) 365, 563, 725
PstI CTGCAG 4 cut(s) 172, 435, 520, 1127
PsuI RGATCY 2 cut(s) 1018, 1055
PsyI GACNNNGTC 2 cut(s) 262, 1086
PvuII CAGCTG 2 cut(s) 173, 569
RsaI GTAC 2 cut(s) 38, 402
RsaNI GTAC 2 cut(s) 37, 401
RseI CAYNNNNRTG 2 cut(s) 117, 720
SaqAI TTAA 7 cut(s) 218, 551, 734, 795, 819, 1101, 1191
SatI GCNGC 2 cut(s) 171, 252
Sau3AI GATC 5 cut(s) 175, 580, 742, 1018, 1055
Sau96I GGNCC 3 cut(s) 365, 563, 725
SchI GAGTC 2 cut(s) 56, 695
ScrFI CCNGG 2 cut(s) 319, 653
SduI GDGCHC 2 cut(s) 875, 1154
SexAI ACCWGGT 1 cut(s) 651
SfaNI GCATC 2 cut(s) 821, 850
SfcI CTRYAG 5 cut(s) 168, 431, 516, 689, 1123
SinI GGWCC 2 cut(s) 365, 563
SmiMI CAYNNNNRTG 2 cut(s) 117, 720
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
Sse9I AATT 6 cut(s) 57, 220, 454, 508, 535, 1067
SsiI CCGC 1 cut(s) 809
SspMI CTAG 1 cut(s) 806
StyD4I CCNGG 2 cut(s) 317, 651
StyI CCWWGG 1 cut(s) 1201
TaaI ACNGT 4 cut(s) 337, 693, 1086, 1106
TaqI TCGA 2 cut(s) 117, 530
TasI AATT 6 cut(s) 57, 220, 454, 508, 535, 1067
TatI WGTACW 1 cut(s) 36
TfiI GAWTC 2 cut(s) 470, 814
Tru1I TTAA 7 cut(s) 218, 551, 734, 795, 819, 1101, 1191
Tru9I TTAA 7 cut(s) 218, 551, 734, 795, 819, 1101, 1191
TscAI CASTG 2 cut(s) 867, 1091
TseFI GTSAC 1 cut(s) 995
TseI GCWGC 2 cut(s) 170, 251
Tsp45I GTSAC 1 cut(s) 995
TspDTI ATGAA 9 cut(s) 135, 173, 177, 362, 462, 548, 603, 693, 931
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 2 cut(s) 867, 1091
Tth111I GACNNNGTC 2 cut(s) 262, 1086
Vha464I CTTAAG 1 cut(s) 818
VneI GTGCAC 1 cut(s) 1150
VpaK11BI GGWCC 2 cut(s) 365, 563
XapI RAATTY 2 cut(s) 220, 535
XceI RCATGY 2 cut(s) 217, 1161
XmiI GTMKAC 4 cut(s) 266, 314, 954, 1063
XspI CTAG 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.