Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0003317

Physical Location & Seq

Genomic Coordinates Reverse (-)

46502274 .. 46504472

Gene Structure 2199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1192100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAGAGAACGTGTTTCGGTTGTCGCTAAGGCTAGGGTAGTGCTTATAAATGTGAGAAGAGTATTTCTAGAGTTTGCAGTGAGCATTGAGCACAACTGTGTAAAAATGGCAGAGAGGTCGACAGAGAATAATAATAATAGATCAGCTGGAGGTGCAGGTGCAGGTGCAGGGAAGTATTTGGTGTGGGAGGACATAACGGTGGCGGTGGTGGCGAACTTGAAAAATGGTGCAACGTCGAGAAAGTTGCTAAATGGGATTAGTGGCTACGCTGAACCTGACCGGATGATGGCACTCATGGGTCCTTCAGGCTCTGGAAAATCAACCGTACTTGATGCCTTGGCTGGGAGGCTTCCTGCAAATGTCAAAATGTCTAGGGATGTTGTACTGAATGGGAACAAAAGAAGCAGACACTACCACAGATATTGTAAGTGTAACTTTAGGACATCCTTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

152

Amino Acids

16.53

Weight (kDa)

10.37

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	83 - 119	2.6e-07	ABC transporter
AAA_29	PF13555	93 - 114	3.4e-06	P-loop containing region of AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51460
fragaria_vesca	FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480
malus_domestica	MD00G1192100.v1.1 MD03G1172300.v1.1
prunus_persica	Prupe.4G254300_v2.0.a1 Prupe.4G254300_v2.0.a1 Prupe.4G254300_v2.0.a1 Prupe.4G254300_v2.0.a1 Prupe.4G254300_v2.0.a1 Prupe.4G254300_v2.0.a1
pyrus_communis	pycom03g12950
rosa_chinensis	RchiOBHm_Chr5g0052851 RchiOBHm_Chr5g0052971
rosa_laevigata	RLG00000034787
rosa_multiflora	Rmu_sc0006729.1_g000004 Rmu_ssc0000311.1_g000005 Rmu_ssc0000311.1_g000013
rosa_roxburghii	Rroxscaffold_1G00027600 Rroxscaffold_1G00028670 Rroxscaffold_1G00028720 Rroxscaffold_1G00028730
rosa_rugosa	Rorug05G0269000
rosa_samantha	Rh5BG352000 Rh5CG378600 Rh5DG368300
rosa_wichuraiana	Rw5G032170 Rw5G032180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	47
AarI	CACCTGC	2 cut(s)	146, 152
Acc36I	ACCTGC	2 cut(s)	146, 152
AccI	GTMKAC	1 cut(s)	119
AciI	CCGC	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	2 cut(s)	327, 384
AfiI	CCNNNNNNNGG	2 cut(s)	286, 342
AflIII	ACRYGT	1 cut(s)	10
AgsI	TTSAA	2 cut(s)	220, 451
AleI	CACNNNNGTG	1 cut(s)	96
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw21I	GWGCWC	1 cut(s)	93
AlwNI	CAGNNNCTG	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	93
BccI	CCATC	1 cut(s)	280
BcgI	CGANNNNNNTGC	4 cut(s)	99, 133, 226, 260
BfaI	CTAG	3 cut(s)	33, 68, 372
BfuAI	ACCTGC	2 cut(s)	146, 152
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	300
BmsI	GCATC	1 cut(s)	322
BpmI	CTGGAG	1 cut(s)	168
Bpu10I	CCTNAGC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	336
BsaWI	WCCGGW	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 342
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	3 cut(s)	288, 382, 443
BseLI	CCNNNNNNNGG	2 cut(s)	286, 342
BseYI	CCCAGC	1 cut(s)	341
BsgI	GTGCAG	3 cut(s)	174, 180, 186
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	280
BslI	CCNNNNNNNGG	2 cut(s)	286, 342
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	140
BspACI	CCGC	1 cut(s)	203
BspLI	GGNNCC	1 cut(s)	300
BspMI	ACCTGC	2 cut(s)	146, 152
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	336
Bst4CI	ACNGT	3 cut(s)	98, 199, 325
Bst6I	CTCTTC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	3 cut(s)	288, 382, 443
BstKTI	GATC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 209
BtsCI	GGATG	3 cut(s)	288, 382, 443
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	84
BveI	ACCTGC	2 cut(s)	146, 152
CaiI	CAGNNNCTG	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	2 cut(s)	326, 383
CspCI	CAANNNNNGTGG	2 cut(s)	404, 439
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	6 cut(s)	32, 146, 264, 309, 341, 349
CviKI_1	RGCY	6 cut(s)	32, 146, 264, 309, 341, 349
CviQI	GTAC	2 cut(s)	326, 383
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	288
EcoO109I	RGGNCCY	1 cut(s)	299
EcoT14I	CCWWGG	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	1 cut(s)	298
FaiI	YATR	3 cut(s)	47, 194, 296
FalI	AAGNNNNNCTT	2 cut(s)	419, 451
FatI	CATG	1 cut(s)	294
FblI	GTMKAC	1 cut(s)	119
FokI	GGATG	3 cut(s)	295, 389, 430
FspBI	CTAG	3 cut(s)	33, 68, 372
GsaI	CCCAGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	168
HapII	CCGG	1 cut(s)	280
Hin1II	CATG	1 cut(s)	298
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HpaII	CCGG	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188III	TCNNGA	3 cut(s)	68, 237, 312
Hpy8I	GTNNAC	1 cut(s)	120
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	1 cut(s)	312
HpyCH4III	ACNGT	3 cut(s)	98, 199, 325
HpyCH4IV	ACGT	2 cut(s)	10, 233
HpyCH4V	TGCA	6 cut(s)	77, 155, 161, 167, 230, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 209
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	2 cut(s)	10, 233
Hsp92II	CATG	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	140
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	3 cut(s)	33, 68, 372
MaeII	ACGT	2 cut(s)	10, 233
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	1 cut(s)	142
MboI	GATC	1 cut(s)	140
MboII	GAAGA	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	93
MnlI	CCTC	4 cut(s)	108, 143, 181, 339
MslI	CAYNNNNRTG	2 cut(s)	96, 197
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	2 cut(s)	152, 209
NdeII	GATC	1 cut(s)	140
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	1 cut(s)	300
OliI	CACNNNNGTG	1 cut(s)	96
PaqCI	CACCTGC	2 cut(s)	146, 152
PpuMI	RGGWCCY	1 cut(s)	299
PsiI	TTATAA	1 cut(s)	47
Psp5II	RGGWCCY	1 cut(s)	299
PspFI	CCCAGC	1 cut(s)	341
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	299
PspPPI	RGGWCCY	1 cut(s)	299
PstNI	CAGNNNCTG	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	2 cut(s)	327, 384
RsaNI	GTAC	2 cut(s)	326, 383
RseI	CAYNNNNRTG	2 cut(s)	96, 197
SalI	GTCGAC	1 cut(s)	118
Sau3AI	GATC	1 cut(s)	140
Sau96I	GGNCC	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	8 cut(s)	13, 119, 148, 154, 160, 166, 236, 277
SfaNI	GCATC	1 cut(s)	322
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	2 cut(s)	96, 197
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	3 cut(s)	33, 68, 372
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	3 cut(s)	98, 199, 325
TaiI	ACGT	2 cut(s)	13, 236
TaqI	TCGA	2 cut(s)	119, 236
TatI	WGTACW	1 cut(s)	382
TscAI	CASTG	1 cut(s)	84
TspRI	CASTG	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	299
XbaI	TCTAGA	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	119
XspI	CTAG	3 cut(s)	33, 68, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.