Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000311.1

Orthogroup ID

OG0003317

Physical Location & Seq

Genomic Coordinates Forward (+)

58700 .. 61010

Gene Structure 2311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000311.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

atgggtctgcaagactgtgctcacagacttatcggaaactggcatttgaggggcataagtggaggagagaagaagaggctgagcattgcactcgaaatactcacaaagccaaggttgttgtttctcgatgagcctaccagtggcctcgacagtgctgcagctttcttcgtagttcaaaccctcagatacattgctgaagatggcagaactgtcatttcttcgattcatcagcccagtagtgaagtgtttgctttgtttgatgatcttgttctgctttctagtggccaaacagtttattctggtcaagcaaaaatggcagtagagttctttgctaaagctggagttccatgcccaagtcgaagaaacccttctgatcactttcttcgttgtattaattcagacttcgacgaagtcacaatgaacacctctcacaaaatacgtcttgcactcttaaggtatggccacgatgataatgaaaaacttgttttacaagaaggacttggggtagaaaagaggagtggaagccaagcaaagtggtggaagcaactctcaatattgacacagagatctttcctcaacatgtctagggatatggggtattactgggtgagaatcatcgtctacatacttttatctctttgcgttggcacaattttctatgacctgggaacaaattacacttcaatatttgcaagaggagcttgtgctggatttatttctggcttcatgactttcatgtccattggaggcttcccatctttccttgaagaaatgaaggtttttcatagagaaaggcttaatgggcattatggagttgctgtctgtactctgtcaaatttcctctcttccttcccattcttggctttgatgtcaattgcatcctcaactataacttactacatggtggaaaagcattctcatttctccaactatgtgttcatgtgccttgatcttctcagcgccattgcagcggtagaaagctccatgatgatcatagcttctcttgttccgaactacttaatgggagtaataattggagcaggatacttgggaatcatgatgatgaccgccggattcttccgcttcatgcgtgaccttcccaaacccgtttggcgctatccagtttcatatctgaactatggtgcatggggctgcagatttattttcttcatcatccttaagatcaaagagagagcttcacctcttttccgagcatgttatgctaagcaaactctgaagcatctcaagaagcgaccctcattcaggaaagatgcaactcttttcccttccatgagacatcaacctctccatcccttgtcttttcaagaaggtctcaactctccactgcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944 GO:0080051 GO:0080167 GO:0080172

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

450

Amino Acids

50.92

Weight (kDa)

9.34

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51460
fragaria_vesca	FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480
malus_domestica	MD00G1192100.v1.1 MD03G1172300.v1.1
prunus_persica	Prupe.4G254300_v2.0.a1 Prupe.4G254300_v2.0.a1 Prupe.4G254300_v2.0.a1 Prupe.4G254300_v2.0.a1 Prupe.4G254300_v2.0.a1 Prupe.4G254300_v2.0.a1
pyrus_communis	pycom03g12950
rosa_chinensis	RchiOBHm_Chr5g0052851 RchiOBHm_Chr5g0052971
rosa_laevigata	RLG00000034787
rosa_multiflora	Rmu_sc0006729.1_g000004 Rmu_ssc0000311.1_g000005 Rmu_ssc0000311.1_g000013
rosa_roxburghii	Rroxscaffold_1G00027600 Rroxscaffold_1G00028670 Rroxscaffold_1G00028720 Rroxscaffold_1G00028730
rosa_rugosa	Rorug05G0269000
rosa_samantha	Rh5BG352000 Rh5CG378600 Rh5DG368300
rosa_wichuraiana	Rw5G032170 Rw5G032180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	736
AccI	GTMKAC	1 cut(s)	621
AciI	CCGC	3 cut(s)	971, 1068, 1081
AcoI	YGGCCR	2 cut(s)	283, 460
AcsI	RAATTY	1 cut(s)	835
AcuI	CTGAAG	2 cut(s)	216, 1256
AfaI	GTAC	1 cut(s)	826
AfiI	CCNNNNNNNGG	3 cut(s)	140, 859, 1263
AflII	CTTAAG	2 cut(s)	451, 1178
AflIII	ACRYGT	1 cut(s)	579
AgsI	TTSAA	4 cut(s)	176, 684, 767, 1325
AjnI	CCWGG	1 cut(s)	663
AjuI	GAANNNNNNNTTGG	2 cut(s)	920, 952
AluBI	AGCT	6 cut(s)	161, 338, 701, 981, 998, 1196
AluI	AGCT	6 cut(s)	161, 338, 701, 981, 998, 1196
Alw21I	GWGCWC	1 cut(s)	22
Alw26I	GTCTC	2 cut(s)	1288, 1337
AoxI	GGCC	3 cut(s)	142, 283, 460
ApeKI	GCWGC	4 cut(s)	155, 158, 968, 1152
ApoI	RAATTY	1 cut(s)	835
AseI	ATTAAT	1 cut(s)	393
Asp700I	GAANNNNTTC	1 cut(s)	367
AspLEI	GCGC	2 cut(s)	962, 1116
AsuHPI	GGTGA	2 cut(s)	619, 1191
BalI	TGGCCA	2 cut(s)	285, 462
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	4 cut(s)	142, 170, 980, 1139
BccI	CCATC	3 cut(s)	194, 763, 1317
BcgI	CGANNNNNNTGC	4 cut(s)	73, 107, 137, 171
BciT130I	CCWGG	1 cut(s)	665
BciVI	GTATCC	1 cut(s)	1037
BclI	TGATCA	2 cut(s)	373, 990
BcoDI	GTCTC	2 cut(s)	1288, 1337
BfaI	CTAG	3 cut(s)	279, 585, 1351
BfmI	CTRYAG	2 cut(s)	156, 1153
BfoI	RGCGCY	2 cut(s)	963, 1117
BfrI	CTTAAG	2 cut(s)	451, 1178
BfuI	GTATCC	1 cut(s)	1037
BglII	AGATCT	1 cut(s)	566
BisI	GCNGC	4 cut(s)	156, 159, 969, 1153
BlpI	GCTNAGC	2 cut(s)	80, 1224
BlsI	GCNGC	4 cut(s)	157, 160, 970, 1154
Bme1390I	CCNGG	1 cut(s)	665
BmrFI	CCNGG	1 cut(s)	665
BmrI	ACTGGG	2 cut(s)	228, 613
BmsI	GCATC	3 cut(s)	887, 1249, 1261
BmuI	ACTGGG	2 cut(s)	228, 613
BpmI	CTGGAG	1 cut(s)	360
Bpu1102I	GCTNAGC	2 cut(s)	80, 1224
BpuEI	CTTGAG	1 cut(s)	1229
BsaI	GGTCTC	1 cut(s)	1337
BsaJI	CCNNGG	2 cut(s)	110, 664
BsaXI	ACNNNNNCTCC	2 cut(s)	804, 834
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 859, 1263
Bse1I	ACTGG	5 cut(s)	44, 138, 234, 608, 1121
Bse3DI	GCAATG	3 cut(s)	84, 189, 963
BseBI	CCWGG	1 cut(s)	665
BseDI	CCNNGG	2 cut(s)	110, 664
BseGI	GGATG	3 cut(s)	878, 1173, 1309
BseLI	CCNNNNNNNGG	3 cut(s)	140, 859, 1263
BseMI	GCAATG	3 cut(s)	84, 189, 963
BseMII	CTCAG	3 cut(s)	71, 196, 970
BseNI	ACTGG	5 cut(s)	44, 138, 234, 608, 1121
BseRI	GAGGAG	3 cut(s)	78, 529, 711
BseXI	GCAGC	4 cut(s)	142, 170, 980, 1139
BsgI	GTGCAG	1 cut(s)	1331
BshFI	GGCC	3 cut(s)	144, 285, 462
BsiHKAI	GWGCWC	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	1071
BslI	CCNNNNNNNGG	3 cut(s)	140, 859, 1263
BsmAI	GTCTC	2 cut(s)	1288, 1337
BsmI	GAATGC	1 cut(s)	913
BsnI	GGCC	3 cut(s)	144, 285, 462
Bso31I	GGTCTC	1 cut(s)	1337
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	6 cut(s)	262, 373, 566, 949, 990, 1182
Bsp1720I	GCTNAGC	2 cut(s)	80, 1224
BspACI	CCGC	3 cut(s)	971, 1068, 1081
BspANI	GGCC	3 cut(s)	144, 285, 462
BspCNI	CTCAG	3 cut(s)	72, 195, 969
BspHI	TCATGA	2 cut(s)	726, 1056
BspMAI	CTGCAG	2 cut(s)	160, 1157
BspTI	CTTAAG	2 cut(s)	451, 1178
BspTNI	GGTCTC	1 cut(s)	1337
BsrDI	GCAATG	3 cut(s)	84, 189, 963
BsrI	ACTGG	5 cut(s)	44, 138, 234, 608, 1121
BssECI	CCNNGG	2 cut(s)	110, 664
BssMI	GATC	6 cut(s)	262, 373, 566, 949, 990, 1182
BssT1I	CCWWGG	1 cut(s)	110
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	4 cut(s)	17, 152, 211, 292
Bst6I	CTCTTC	2 cut(s)	68, 850
BstAFI	CTTAAG	2 cut(s)	451, 1178
BstAPI	GCANNNNNTGC	1 cut(s)	1220
BstDEI	CTNAG	4 cut(s)	80, 182, 956, 1224
BstENI	CCTNNNNNAGG	1 cut(s)	1261
BstF5I	GGATG	3 cut(s)	878, 1173, 1309
BstH2I	RGCGCY	2 cut(s)	963, 1117
BstHHI	GCGC	2 cut(s)	962, 1116
BstKTI	GATC	6 cut(s)	265, 376, 569, 952, 993, 1185
BstMAI	GTCTC	2 cut(s)	1288, 1337
BstMBI	GATC	6 cut(s)	262, 373, 566, 949, 990, 1182
BstMWI	GCNNNNNNNGC	5 cut(s)	314, 698, 802, 968, 1220
BstNI	CCWGG	1 cut(s)	665
BstNSI	RCATGY	2 cut(s)	583, 1218
BstSCI	CCNGG	1 cut(s)	663
BstSFI	CTRYAG	2 cut(s)	156, 1153
BstV1I	GCAGC	4 cut(s)	142, 170, 980, 1139
BstX2I	RGATCY	1 cut(s)	566
BstYI	RGATCY	1 cut(s)	566
BsuI	GTATCC	1 cut(s)	1037
BsuRI	GGCC	3 cut(s)	144, 285, 462
BtsCI	GGATG	3 cut(s)	878, 1173, 1309
BtsI	GCAGTG	1 cut(s)	1343
BtsIMutI	CAGTG	3 cut(s)	145, 157, 1343
CciI	TCATGA	2 cut(s)	726, 1056
CfoI	GCGC	2 cut(s)	962, 1116
Csp6I	GTAC	1 cut(s)	825
CspCI	CAANNNNNGTGG	2 cut(s)	515, 550
CviQI	GTAC	1 cut(s)	825
DdeI	CTNAG	4 cut(s)	80, 182, 956, 1224
DpnI	GATC	6 cut(s)	264, 375, 568, 951, 992, 1184
DpnII	GATC	6 cut(s)	262, 373, 566, 949, 990, 1182
DrdI	GACNNNNNNGTC	1 cut(s)	736
DseDI	GACNNNNNNGTC	1 cut(s)	736
EaeI	YGGCCR	2 cut(s)	283, 460
Eam1104I	CTCTTC	2 cut(s)	68, 850
EarI	CTCTTC	2 cut(s)	68, 850
Eco130I	CCWWGG	1 cut(s)	110
Eco31I	GGTCTC	1 cut(s)	1337
Eco57I	CTGAAG	2 cut(s)	216, 1256
EcoNI	CCTNNNNNAGG	1 cut(s)	1261
EcoRII	CCWGG	1 cut(s)	663
EcoT14I	CCWWGG	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	110
FalI	AAGNNNNNCTT	6 cut(s)	352, 384, 483, 515, 685, 717
FbaI	TGATCA	2 cut(s)	373, 990
FblI	GTMKAC	1 cut(s)	621
Fnu4HI	GCNGC	4 cut(s)	156, 159, 969, 1153
FokI	GGATG	3 cut(s)	865, 1160, 1296
Fsp4HI	GCNGC	4 cut(s)	156, 159, 969, 1153
FspBI	CTAG	3 cut(s)	279, 585, 1351
GlaI	GCGC	2 cut(s)	961, 1115
GluI	GCNGC	4 cut(s)	156, 159, 969, 1153
GsuI	CTGGAG	1 cut(s)	360
HaeII	RGCGCY	2 cut(s)	963, 1117
HaeIII	GGCC	3 cut(s)	144, 285, 462
HapII	CCGG	1 cut(s)	1071
HhaI	GCGC	2 cut(s)	962, 1116
Hin6I	GCGC	2 cut(s)	960, 1114
HinP1I	GCGC	2 cut(s)	960, 1114
HinfI	GANTC	4 cut(s)	223, 612, 1053, 1074
HpaII	CCGG	1 cut(s)	1071
HphI	GGTGA	2 cut(s)	619, 1191
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	8 cut(s)	35, 185, 373, 400, 1011, 1134, 1211, 1236
Hpy188III	TCNNGA	6 cut(s)	125, 727, 1057, 1246, 1264, 1325
Hpy8I	GTNNAC	1 cut(s)	622
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	7 cut(s)	378, 488, 769, 859, 1106, 1296, 1322
HpyCH4III	ACNGT	4 cut(s)	17, 152, 211, 292
HpyCH4IV	ACGT	1 cut(s)	439
HpyF10VI	GCNNNNNNNGC	5 cut(s)	314, 698, 802, 968, 1220
HpyF3I	CTNAG	4 cut(s)	80, 182, 956, 1224
HpySE526I	ACGT	1 cut(s)	439
HspAI	GCGC	2 cut(s)	960, 1114
Ksp22I	TGATCA	2 cut(s)	373, 990
Kzo9I	GATC	6 cut(s)	262, 373, 566, 949, 990, 1182
LmnI	GCTCC	3 cut(s)	698, 986, 1037
Lsp1109I	GCAGC	4 cut(s)	142, 170, 980, 1139
LweI	GCATC	3 cut(s)	887, 1249, 1261
MaeI	CTAG	3 cut(s)	279, 585, 1351
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	2 cut(s)	412, 1091
MalI	GATC	6 cut(s)	264, 375, 568, 951, 992, 1184
MboI	GATC	6 cut(s)	262, 373, 566, 949, 990, 1182
MfeI	CAATTG	1 cut(s)	873
MflI	RGATCY	1 cut(s)	566
MhlI	GDGCHC	1 cut(s)	22
MlsI	TGGCCA	2 cut(s)	285, 462
MluCI	AATT	6 cut(s)	394, 651, 673, 835, 873, 1032
MluNI	TGGCCA	2 cut(s)	285, 462
MmeI	TCCRAC	1 cut(s)	951
Mox20I	TGGCCA	2 cut(s)	285, 462
MroXI	GAANNNNTTC	1 cut(s)	367
MscI	TGGCCA	2 cut(s)	285, 462
MseI	TTAA	5 cut(s)	393, 452, 798, 1019, 1179
MslI	CAYNNNNRTG	1 cut(s)	1061
Msp20I	TGGCCA	2 cut(s)	285, 462
MspA1I	CMGCKG	1 cut(s)	971
MspCI	CTTAAG	2 cut(s)	451, 1178
MspI	CCGG	1 cut(s)	1071
MspR9I	CCNGG	1 cut(s)	665
MunI	CAATTG	1 cut(s)	873
Mva1269I	GAATGC	1 cut(s)	913
MvaI	CCWGG	1 cut(s)	665
MwoI	GCNNNNNNNGC	5 cut(s)	314, 698, 802, 968, 1220
NdeII	GATC	6 cut(s)	262, 373, 566, 949, 990, 1182
NmuCI	GTSAC	2 cut(s)	412, 1091
NspI	RCATGY	2 cut(s)	583, 1218
PagI	TCATGA	2 cut(s)	726, 1056
PciI	ACATGT	1 cut(s)	579
PctI	GAATGC	1 cut(s)	913
PdmI	GAANNNNTTC	1 cut(s)	367
PfeI	GAWTC	4 cut(s)	223, 612, 1053, 1074
PflFI	GACNNNGTC	1 cut(s)	410
PkrI	GCNGC	4 cut(s)	157, 160, 970, 1154
PscI	ACATGT	1 cut(s)	579
PshBI	ATTAAT	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	663
PspGI	CCWGG	1 cut(s)	663
PstI	CTGCAG	2 cut(s)	160, 1157
PsuI	RGATCY	1 cut(s)	566
PsyI	GACNNNGTC	1 cut(s)	410
RsaI	GTAC	1 cut(s)	826
RsaNI	GTAC	1 cut(s)	825
RseI	CAYNNNNRTG	1 cut(s)	1061
SaqAI	TTAA	5 cut(s)	393, 452, 798, 1019, 1179
SatI	GCNGC	4 cut(s)	156, 159, 969, 1153
Sau3AI	GATC	6 cut(s)	262, 373, 566, 949, 990, 1182
ScrFI	CCNGG	1 cut(s)	665
SduI	GDGCHC	1 cut(s)	22
SfaNI	GCATC	3 cut(s)	887, 1249, 1261
SfcI	CTRYAG	2 cut(s)	156, 1153
SmiMI	CAYNNNNRTG	1 cut(s)	1061
SmlI	CTYRAG	3 cut(s)	451, 1178, 1244
SmoI	CTYRAG	3 cut(s)	451, 1178, 1244
Sse9I	AATT	6 cut(s)	394, 651, 673, 835, 873, 1032
SsiI	CCGC	3 cut(s)	971, 1068, 1081
SspI	AATATT	2 cut(s)	555, 687
SspMI	CTAG	3 cut(s)	279, 585, 1351
StyD4I	CCNGG	1 cut(s)	663
StyI	CCWWGG	1 cut(s)	110
TaaI	ACNGT	4 cut(s)	17, 152, 211, 292
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	6 cut(s)	93, 126, 147, 221, 358, 405
TasI	AATT	6 cut(s)	394, 651, 673, 835, 873, 1032
TatI	WGTACW	1 cut(s)	824
TfiI	GAWTC	4 cut(s)	223, 612, 1053, 1074
Tru1I	TTAA	5 cut(s)	393, 452, 798, 1019, 1179
Tru9I	TTAA	5 cut(s)	393, 452, 798, 1019, 1179
TscAI	CASTG	3 cut(s)	145, 157, 1350
TseFI	GTSAC	2 cut(s)	412, 1091
TseI	GCWGC	4 cut(s)	155, 158, 968, 1152
Tsp45I	GTSAC	2 cut(s)	412, 1091
TspRI	CASTG	3 cut(s)	145, 157, 1350
Tth111I	GACNNNGTC	1 cut(s)	410
Vha464I	CTTAAG	2 cut(s)	451, 1178
VspI	ATTAAT	1 cut(s)	393
XagI	CCTNNNNNAGG	1 cut(s)	1261
XapI	RAATTY	1 cut(s)	835
XceI	RCATGY	2 cut(s)	583, 1218
XmiI	GTMKAC	1 cut(s)	621
XmnI	GAANNNNTTC	1 cut(s)	367
XspI	CTAG	3 cut(s)	279, 585, 1351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.