Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003317

Physical Location & Seq

Genomic Coordinates Reverse (-)

36725771 .. 36726296

Gene Structure 526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00028730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAGTTAGAGGAATATAGTGGAGCTGGTTCTGTAAAATCTTCAGATATAAGTGGTGATAGTGGTGACCGAAGAAGAGATGGTGAAGGTGGCAATAATGGCTTGATGTATTTGGTGTGGGAAGATGTGAGTGTTGTGCTTCCAAACTTTGGGATTGGAAATAGCACTAATGGAGGACACACCAGAAGATTGCTTGATGGCCTCACTGGTTTTGCTGAGCCTGGTAGGATCATGGCTATTATGGGTCCTTCTGGCTCTGGAAAATCAACCCTTCTTGATGCTTTAGCAGGCCAGTTCTCTCTCTCTCTCTCTCTCTCTCGAAAGTGTCAAATTGATGAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944 GO:0080051 GO:0080167 GO:0080172

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

114

Amino Acids

12.0

Weight (kDa)

4.7

Isoelectric Point (pI)

31.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	70 - 100	1.6e-07	ABC transporter
AAA_29	PF13555	74 - 96	8.6e-07	P-loop containing region of AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003317)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51460
fragaria_vesca	FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480 FvH4_3g28480
malus_domestica	MD00G1192100.v1.1 MD03G1172300.v1.1
prunus_persica	Prupe.4G254300_v2.0.a1 Prupe.4G254300_v2.0.a1 Prupe.4G254300_v2.0.a1 Prupe.4G254300_v2.0.a1 Prupe.4G254300_v2.0.a1 Prupe.4G254300_v2.0.a1
pyrus_communis	pycom03g12950
rosa_chinensis	RchiOBHm_Chr5g0052851 RchiOBHm_Chr5g0052971
rosa_laevigata	RLG00000034787
rosa_multiflora	Rmu_sc0006729.1_g000004 Rmu_ssc0000311.1_g000005 Rmu_ssc0000311.1_g000013
rosa_roxburghii	Rroxscaffold_1G00027600 Rroxscaffold_1G00028670 Rroxscaffold_1G00028720 Rroxscaffold_1G00028730
rosa_rugosa	Rorug05G0269000
rosa_samantha	Rh5BG352000 Rh5CG378600 Rh5DG368300
rosa_wichuraiana	Rw5G032170 Rw5G032180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	149
AclWI	GGATC	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
AlwI	GGATC	1 cut(s)	236
AoxI	GGCC	2 cut(s)	199, 289
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	3 cut(s)	68, 77, 95
AvaII	GGWCC	1 cut(s)	245
BccI	CCATC	2 cut(s)	74, 191
BciT130I	CCWGG	1 cut(s)	222
BlpI	GCTNAGC	1 cut(s)	216
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	268
Bpu1102I	GCTNAGC	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse1I	ACTGG	2 cut(s)	211, 292
BseBI	CCWGG	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	211, 292
BshFI	GGCC	2 cut(s)	201, 291
BslI	CCNNNNNNNGG	1 cut(s)	149
BsnI	GGCC	2 cut(s)	201, 291
Bsp143I	GATC	1 cut(s)	228
Bsp1720I	GCTNAGC	1 cut(s)	216
BspANI	GGCC	2 cut(s)	201, 291
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	246
BspPI	GGATC	1 cut(s)	236
BsrI	ACTGG	2 cut(s)	211, 292
BssMI	GATC	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	1 cut(s)	216
BstEII	GGTNACC	1 cut(s)	65
BstKTI	GATC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	222
BstPI	GGTNACC	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	201, 291
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	245
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	7 cut(s)	26, 102, 201, 220, 236, 255, 291
CviKI_1	RGCY	7 cut(s)	26, 102, 201, 220, 236, 255, 291
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	27
Eco91I	GGTNACC	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	245
EcoO65I	GGTNACC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	220
FaeI	CATG	1 cut(s)	235
FaiI	YATR	4 cut(s)	18, 50, 233, 242
FatI	CATG	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	201, 291
Hin1II	CATG	1 cut(s)	235
HphI	GGTGA	3 cut(s)	68, 77, 95
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	3 cut(s)	258, 275, 318
HpyAV	CCTTC	3 cut(s)	80, 258, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	9 cut(s)	12, 192, 196, 207, 234, 237, 243, 273, 305
LweI	GCATC	1 cut(s)	268
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	5 cut(s)	33, 84, 87, 134, 198
MluCI	AATT	1 cut(s)	330
MnlI	CCTC	3 cut(s)	4, 167, 212
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	99
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	65
PflMI	CCANNNNNTGG	1 cut(s)	149
PpuMI	RGGWCCY	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	220
PspEI	GGTNACC	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	1 cut(s)	245
PspPPI	RGGWCCY	1 cut(s)	245
Sau3AI	GATC	1 cut(s)	228
Sau96I	GGNCC	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	222
SetI	ASST	2 cut(s)	28, 91
SfaNI	GCATC	1 cut(s)	268
SinI	GGWCC	1 cut(s)	245
Sse9I	AATT	1 cut(s)	330
SspI	AATATT	1 cut(s)	341
StyD4I	CCNGG	1 cut(s)	220
TaqI	TCGA	1 cut(s)	319
TaqII	GACCGA	1 cut(s)	84
TasI	AATT	1 cut(s)	330
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	65
TspRI	CASTG	1 cut(s)	211
Van91I	CCANNNNNTGG	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.