Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0013339

Physical Location & Seq

Genomic Coordinates Forward (+)

17913620 .. 17918552

Gene Structure 4933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1073600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3606 bp

ATGATGCCATTATACAGATACATGGATTCAAACCCCTACCAAAGAAACCAAACTTTCTCTTACCCTCAGTATCATAATCCGGGTTTCGGGTCCAATCCGTCCATGGTATGTGAGCCTTGGCCCTGTGGCGGAAACTATGGCTACCCAATGCCTTGCCATTCTTGCTATAACCATAATTTCAGACCCTCTTACCCTCATCCTTCAATGCCATCACCGCAACACTTCTATGGGGGTTATCCTGTTCCGCATCACGAGGCCTACCCTGTTCCATATGTGCCGCCGCCTCCTCATTATTCCATGGAGATTCCTAAATATGAGTATGATAAGATGGTACCTCGAAATTATCACTGTTTTGGGTGTCCTAATCATGTTTGCCACCAGAATGTAGATAAGGGTGTGAAGATTGAAGAACAAGGATCGGATGTTGTCGATAAGAAGGCAGATTTGGTTCCGGTTCATATGAACAACAACCATTATCCAACTTTGTGGTTTCCACCGGATTCCTTGAATGGTAGAGAGCAAAGGAAGGTTTCCGAACCGGAGGTCGTAGAGGAAACAAAAATTCCAACTGATTCTAAGCCTACAGAGGGTTTGAAGTCTCAGGGAGATCAAAGGCATATTCGGTTCCCTTTTGATCTGAATGACATTGGGGCTTCGATGCAAGGAGGAAATAGAGAGCCACGTCAAGAACAGCAGGTGGAGGATAAAAAGAAGGAATTCCCATTTCCAATTTTCTGGATGCCACCTTATCAGGAGGCTGGAAAGAAGGACAAGAATGTCAATGCTTCTCGTGATCACAAGACTGAGGATGAACATAAGCAAATCCCATTTCCATTCTTCTGGTTTCCTTACGGAAACAAGCAGGAGGAAGTTCGAAAGGAGGACAACAGGGAGGTGAATTCCGCACCAAAAATTGTTCCAATGAAAATTACTGGGGGTGGTGTCACAATGGAGGCTGGTACAAATGAAGAGAAACCTGCTGGTCAGGGTGCTGAGGAGAGGAAGGAAAACACTGCTAACGTGAAAAGCATAGTTGTGAAGCAAATGGATCCACGTAAGGAGGAAAATAACTCTGAAGACGAGGAGAGAAGAGAAAGGAGTGTCCCCGTGAAACAAGTGGAAGAGAATGTGGGGAACAAACCTTCTGGTACGAGTGTTAAGAGACAGTCCTCTTCCCCTAAAAAGTCATCTGAGCTACCTCCCGTCTGTCTGAGAGTTGATCCACTGCCGAGGAAGAAGAAGGCCAATGGCAGTTCACGGTCTCCTAGTCCTCCTGCTCAAAAAGGACACAAAAAAGAAGTGGAGCCATCCATAAAGGAGAAGGATACAGAGGTGGTGGATAGGACAATCAGTGAGAACAAGGATCCGATGCATACATCCAAGATTCTTACTAATTCTAAAGAGGATGTTTCTAGGAATTCAACCGTTTGGGAATCTGAGAAGGATGGAGATAGATGTCGGACCAACAAGGATGAAGGAGCACAAAAGGTTGCAGATGCAAAATCTGAGGAGACTAATAAGCCTACGGAGGCAACCAAATCAGTTGCTGATGGAAAACTTGCGAGGACATTGTCAGATATAGAGGCTGCTGTGCTTATTCAATCTGCCTTTCGTGGGTTTGAGGTCAGGAGGTGGGAACCATTGAAGAAACTAAAGCAAATAGCTGACATTCGTGAGCAGGTTGCTGATATTCGTAATCGTATCTCCACTTTAGAGACTTCTGATCTCCAGAAAGATGACAAGCAGAGAGTAATAATTGGGGAGACAATCATGAGACTCCTCCTCAAGTTGGATACCATTCAGGGTTTGCTTCCAAGCCTCAGAGACATTAGAAGATCCTTGGCAAGGGAGCTCGTAGTTCTGCAGGAAAAGCTTGACGAGCTCGGTGAGAACACCAACAACGGTAACTGCATGCTAGAGCAGCAAAGAGAGGACGTGACTGGACTTGGTGAAGGATTGCCTGATGGTGTCAGTGATAGCAGTCATCATGGTACAGACCATTGTCAAGGGGAAGTGCTTCAGAATGTTGAACCTGAGCCTGGTTTGAGAGCCAAGGAACCAGGCCATTGTAATCATAGAGAGTTGCACGCCGCAGCAGAGGATGGTGATCAAGAGCTACAGGTGGAAAGTTGCTTAAAGTCTGAAGATAATGGTTTTGCGCCCATTGTGGAAACAAAAGATGATGTGGTTGGTGAACAGTCTACTGGAGATATGGCGGTGGGAGATGCAGAAATGAAGAATGGTTTTACTCAGCCTGGGCAATGCAGTGAAGCACCATCTCTAATAGAAGGAAACCATACTCTGACAGGAAACTCTTCCGAAGCTGTTAATATAAACGTAGAGACAAGAGAGCCTGGAGAGTTGCCTCGAGGAGTAACTGATGACGAACCTGCCATTTTGGAGCCTGGGAAGGATGAACAAGTGGAAGTGTTGCCGGATGTGACTCCACCAAATGCTTGTGCTTGTGTGATGGAAAAGGACTTAGAGATGCAAGAGATAGCAGAACTGTCACGGGGCATGATTGATGAGTACAATGCACTTACCGAATCTACCATTTTGGAGCCTAAAATCGTTGAACAAGTAGAACTGTTGCCAGATGTGACTTCATCAAATGCTTGTGCTTATGTGACGGAAAAGGAAGCAGAGATGCAAGAGCTAGCAGAACTGCCACGGGGCATGACTGATGAGCACAATGCACTTAATGAGTCCAAGGAAATTGAAGAAGTCGGAGTGGTGAAGGAAGATGATTCCCTACAAAGTGGAGAAGAACATCATGTGGCATTTGATGTAACTTCACAACCGGATGGAACTTCAAATACGGATCAATTAGAGCAACGACGAGAGGGAGCAGGGGAAGAGCAACCTGTTGTCCGTTTTGAGCAGCAGGTAGAGATTGGATCTCAGGAGGATGAAGGACGCCCTTCAGATTCAGTGCTTGATTTAGAGGTAGTGCTCCAGCCACAAGAACAAGTCGGCAAAGATGATCATCTTCCACTGGCCTCTGAGTCGATTGAAACCCAAGCACTGAGCTTACCTGTTCAGACCGAAGCTCATGATGTTGTGCATGAAGATGGACCCTTGGACATGATTCATGATCATCATTTGGGCCGGCCTAGCGAGGACCAAGTGCCAATTGAGAGAAGTACAAAAGACTGTGAGCACCTGCGAGCAGAAACAGTTATAGAGGATACAAAGATGCAGGAGATCAACCTCAAATGCGAGGACAACAAGAATGCACCGCCTAATGTTGCTGAAACTGTTGTGGATGACGTCTTCAGTGAGACACAATCCACTCCAGTGCAGAAGAGTGAATCATTGCCTGAGAAACAAGTAGCGATCGAGGCATCCTCCATTGATGGAGATGTCATGGAACTCGAAAGTGGTAGAAAGCTGATTGAAGAGAACGAGAAACTCAGGGCAATGATGCAGAAGTTCATGGAAGCCGGAAATGAACAGCTACAAGCTATATCGAACCTGACCGGCAGAGTGAAAGACTTGGAGAAAAAATTGGCTCGGAAGAAGAAAGTAAGGGGTAGAAGGTTACCTTCTCGTGCCAGGCCATCAAACAATTGTTCCAAGGAGATGGATGCTGGTGTTGCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005911 GO:0006457 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009791 GO:0009814 GO:0009817 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010035 GO:0010228 GO:0010506 GO:0010508 GO:0010941 GO:0010942 GO:0012502 GO:0019222 GO:0022414 GO:0030054 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0043067 GO:0043068 GO:0043207 GO:0044237 GO:0044248 GO:0045087 GO:0046677 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0061919 GO:0065007 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG IQ

Protein Analysis

1202

Amino Acids

134.55

Weight (kDa)

4.94

Isoelectric Point (pI)

58.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	554 - 628	5e-10	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46240
fragaria_vesca	FvH4_7g15690 FvH4_7g15690
malus_domestica	MD01G1073600.v1.1
prunus_persica	Prupe.2G181700_v2.0.a1
pyrus_communis	pycom01g10280
rosa_chinensis	RchiOBHm_Chr1g0358421
rosa_laevigata	RLG00000027961
rosa_multiflora	Rmu_sc0041976.1_g000002 Rmu_ssc0000348.1_g000008
rosa_roxburghii	Rroxscaffold_4G00297950
rosa_rugosa	Rorug01G0261700 Rorug01G0261800
rosa_samantha	Rh1AG275900 Rh1BG242700 Rh1CG259700 Rh1DG271100
rosa_wichuraiana	Rw1G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	685, 3171
AasI	GACNNNNNNGTC	1 cut(s)	776
AatII	GACGTC	1 cut(s)	3273
AbsI	CCTCGAGG	1 cut(s)	2367
Acc36I	ACCTGC	6 cut(s)	685, 985, 1669, 2398, 2875, 3171
Acc65I	GGTACC	1 cut(s)	331
AccB1I	GGYRCC	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	2201
AciI	CCGC	9 cut(s)	129, 215, 245, 278, 281, 903, 2091, 2216, 3239
AclWI	GGATC	9 cut(s)	424, 1043, 1056, 1214, 1358, 1371, 1830, 2829, 2905
AcsI	RAATTY	4 cut(s)	561, 716, 898, 1417
AcuI	CTGAAG	5 cut(s)	1095, 2003, 2163, 2907, 3259
AcyI	GRCGYC	2 cut(s)	2917, 3270
AfaI	GTAC	6 cut(s)	333, 961, 1150, 1993, 2531, 3145
AfiI	CCNNNNNNNGG	7 cut(s)	86, 128, 587, 1614, 1789, 1845, 2039
AjiI	CACGTC	2 cut(s)	683, 1936
AjnI	CCWGG	6 cut(s)	2038, 2059, 2254, 2353, 2404, 3554
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
AleI	CACNNNNGTG	1 cut(s)	3296
Alw21I	GWGCWC	6 cut(s)	1483, 1854, 1884, 2691, 2955, 3162
AlwI	GGATC	9 cut(s)	424, 1043, 1056, 1214, 1358, 1371, 1830, 2829, 2905
AlwNI	CAGNNNCTG	1 cut(s)	1547
Ama87I	CYCGRG	1 cut(s)	2367
AoxI	GGCC	8 cut(s)	119, 255, 1242, 2062, 2997, 3106, 3110, 3557
ApeKI	GCWGC	4 cut(s)	1586, 1921, 2093, 2881
ApoI	RAATTY	4 cut(s)	561, 716, 898, 1417
ArsI	GACNNNNNNTTYG	2 cut(s)	528, 560
Asp700I	GAANNNNTTC	3 cut(s)	716, 2016, 2314
Asp718I	GGTACC	1 cut(s)	331
AspLEI	GCGC	1 cut(s)	2161
AspS9I	GGNCC	6 cut(s)	90, 120, 1461, 3074, 3106, 3121
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	7 cut(s)	204, 907, 1898, 1961, 2117, 2204, 2746
AsuII	TTCGAA	1 cut(s)	874
AsuNHI	GCTAGC	1 cut(s)	2656
AvaI	CYCGRG	1 cut(s)	2367
AvaII	GGWCC	4 cut(s)	90, 1461, 3074, 3121
BaeI	ACNNNNGTAYC	4 cut(s)	1140, 1173, 1317, 1350
BamHI	GGATCC	2 cut(s)	1048, 1363
BanI	GGYRCC	1 cut(s)	331
BanII	GRGCYC	2 cut(s)	1854, 1884
BauI	CACGAG	3 cut(s)	251, 789, 3549
BbsI	GAAGAC	2 cut(s)	1083, 3265
Bbv12I	GWGCWC	6 cut(s)	1483, 1854, 1884, 2691, 2955, 3162
BbvCI	CCTCAGC	1 cut(s)	993
BbvI	GCAGC	4 cut(s)	1573, 1933, 2105, 2893
BciT130I	CCWGG	6 cut(s)	2040, 2061, 2256, 2355, 2406, 3556
BciVI	GTATCC	3 cut(s)	1318, 1786, 3181
BclI	TGATCA	4 cut(s)	793, 2107, 2983, 3094
BcnI	CCSGG	1 cut(s)	81
BfaI	CTAG	5 cut(s)	1266, 1413, 1916, 2657, 3114
BfmI	CTRYAG	3 cut(s)	582, 1862, 2117
BfuAI	ACCTGC	6 cut(s)	685, 985, 1669, 2398, 2875, 3171
BfuI	GTATCC	3 cut(s)	1318, 1786, 3181
BisI	GCNGC	7 cut(s)	278, 281, 1587, 1922, 2091, 2094, 2882
BlsI	GCNGC	7 cut(s)	279, 282, 1588, 1923, 2092, 2095, 2883
Bme1390I	CCNGG	7 cut(s)	81, 2040, 2061, 2256, 2355, 2406, 3556
Bme18I	GGWCC	4 cut(s)	90, 1461, 3074, 3121
BmeT110I	CYCGRG	1 cut(s)	2367
BmgBI	CACGTC	2 cut(s)	683, 1936
BmgT120I	GGNCC	6 cut(s)	90, 120, 1461, 3074, 3106, 3121
BmrFI	CCNGG	7 cut(s)	81, 2040, 2061, 2256, 2355, 2406, 3556
BmrI	ACTGGG	1 cut(s)	942
BmtI	GCTAGC	1 cut(s)	2660
BmuI	ACTGGG	1 cut(s)	942
BoxI	GACNNNNGTC	1 cut(s)	2001
BpiI	GAAGAC	2 cut(s)	1083, 3265
BplI	GAGNNNNNCTC	2 cut(s)	3332, 3364
BpmI	CTGGAG	5 cut(s)	1712, 2226, 2376, 2939, 3279
Bpu10I	CCTNAGC	2 cut(s)	993, 2034
Bpu14I	TTCGAA	1 cut(s)	874
BpuEI	CTTGAG	1 cut(s)	1769
BpuMI	CCSGG	1 cut(s)	81
BsaAI	YACGTR	1 cut(s)	1055
BsaBI	GATNNNNATC	2 cut(s)	2106, 2985
BsaHI	GRCGYC	2 cut(s)	2917, 3270
BsaI	GGTCTC	1 cut(s)	1266
BsaWI	WCCGGW	4 cut(s)	451, 496, 538, 2800
Bsc4I	CCNNNNNNNGG	7 cut(s)	86, 128, 587, 1614, 1789, 1845, 2039
Bse118I	RCCGGY	2 cut(s)	3108, 3479
Bse1I	ACTGG	5 cut(s)	937, 1945, 2209, 3000, 3296
Bse3DI	GCAATG	4 cut(s)	2267, 3314, 3426, 3606
Bse8I	GATNNNNATC	2 cut(s)	2106, 2985
BseBI	CCWGG	6 cut(s)	2040, 2061, 2256, 2355, 2406, 3556
BseJI	GATNNNNATC	2 cut(s)	2106, 2985
BseLI	CCNNNNNNNGG	7 cut(s)	86, 128, 587, 1614, 1789, 1845, 2039
BseMI	GCAATG	4 cut(s)	2267, 3314, 3426, 3606
BseNI	ACTGG	5 cut(s)	937, 1945, 2209, 3000, 3296
BseRI	GAGGAG	7 cut(s)	276, 1010, 1097, 1523, 1769, 1772, 2385
BseXI	GCAGC	4 cut(s)	1573, 1933, 2105, 2893
BsgI	GTGCAG	1 cut(s)	3320
Bsh1285I	CGRYCG	1 cut(s)	3339
BshFI	GGCC	8 cut(s)	121, 257, 1244, 2064, 2999, 3108, 3112, 3559
BshNI	GGYRCC	1 cut(s)	331
BsiEI	CGRYCG	1 cut(s)	3339
BsiHKAI	GWGCWC	6 cut(s)	1483, 1854, 1884, 2691, 2955, 3162
BsiHKCI	CYCGRG	1 cut(s)	2367
BsiSI	CCGG	9 cut(s)	80, 452, 497, 539, 2435, 2801, 3109, 3444, 3480
BslFI	GGGAC	1 cut(s)	1088
BslI	CCNNNNNNNGG	7 cut(s)	86, 128, 587, 1614, 1789, 1845, 2039
BsmFI	GGGAC	1 cut(s)	1088
BsmI	GAATGC	1 cut(s)	3238
BsnI	GGCC	8 cut(s)	121, 257, 1244, 2064, 2999, 3108, 3112, 3559
Bso31I	GGTCTC	1 cut(s)	1266
BsoBI	CYCGRG	1 cut(s)	2367
Bsp119I	TTCGAA	1 cut(s)	874
Bsp1286I	GDGCHC	6 cut(s)	1483, 1854, 1884, 2691, 2955, 3162
Bsp19I	CCATGG	2 cut(s)	102, 297
BspACI	CCGC	9 cut(s)	129, 215, 245, 278, 281, 903, 2091, 2216, 3239
BspANI	GGCC	8 cut(s)	121, 257, 1244, 2064, 2999, 3108, 3112, 3559
BspHI	TCATGA	3 cut(s)	1770, 3052, 3091
BspMAI	CTGCAG	1 cut(s)	1866
BspMI	ACCTGC	6 cut(s)	685, 985, 1669, 2398, 2875, 3171
BspOI	GCTAGC	1 cut(s)	2660
BspPI	GGATC	9 cut(s)	424, 1043, 1056, 1214, 1358, 1371, 1830, 2829, 2905
BspQI	GCTCTTC	1 cut(s)	2850
BspT104I	TTCGAA	1 cut(s)	874
BspT107I	GGYRCC	1 cut(s)	331
BspTNI	GGTCTC	1 cut(s)	1266
BsrDI	GCAATG	4 cut(s)	2267, 3314, 3426, 3606
BsrFI	RCCGGY	2 cut(s)	3108, 3479
BsrI	ACTGG	5 cut(s)	937, 1945, 2209, 3000, 3296
BssAI	RCCGGY	2 cut(s)	3108, 3479
BssNI	GRCGYC	2 cut(s)	2917, 3270
BssSI	CACGAG	3 cut(s)	251, 789, 3549
BssT1I	CCWWGG	8 cut(s)	102, 116, 297, 1839, 2052, 2709, 3078, 3576
Bst2BI	CACGAG	3 cut(s)	251, 789, 3549
Bst2UI	CCWGG	6 cut(s)	2040, 2061, 2256, 2355, 2406, 3556
Bst6I	CTCTTC	8 cut(s)	963, 1084, 1116, 1177, 2320, 2850, 3299, 3393
BstACI	GRCGYC	2 cut(s)	2917, 3270
BstBAI	YACGTR	1 cut(s)	1055
BstBI	TTCGAA	1 cut(s)	874
BstC8I	GCNNGC	5 cut(s)	1913, 2088, 2658, 3110, 3168
BstDSI	CCRYGG	3 cut(s)	102, 297, 2669
BstEII	GGTNACC	1 cut(s)	3540
BstENI	CCTNNNNNAGG	1 cut(s)	1843
BstHHI	GCGC	1 cut(s)	2161
BstMCI	CGRYCG	1 cut(s)	3339
BstMWI	GCNNNNNNNGC	8 cut(s)	162, 214, 1870, 1879, 1921, 3114, 3341, 3596
BstNI	CCWGG	6 cut(s)	2040, 2061, 2256, 2355, 2406, 3556
BstNSI	RCATGY	1 cut(s)	1915
BstPAI	GACNNNNGTC	1 cut(s)	2001
BstPI	GGTNACC	1 cut(s)	3540
BstSCI	CCNGG	7 cut(s)	79, 2038, 2059, 2254, 2353, 2404, 3554
BstSFI	CTRYAG	3 cut(s)	582, 1862, 2117
BstV1I	GCAGC	4 cut(s)	1573, 1933, 2105, 2893
BstV2I	GAAGAC	2 cut(s)	1083, 3265
BstX2I	RGATCY	4 cut(s)	1048, 1363, 1835, 2897
BstXI	CCANNNNNNTGG	4 cut(s)	486, 735, 840, 3583
BstYI	RGATCY	4 cut(s)	1048, 1363, 1835, 2897
BsuI	GTATCC	3 cut(s)	1318, 1786, 3181
BsuRI	GGCC	8 cut(s)	121, 257, 1244, 2064, 2999, 3108, 3112, 3559
BtgI	CCRYGG	3 cut(s)	102, 297, 2669
BtrI	CACGTC	2 cut(s)	683, 1936
BtsI	GCAGTG	3 cut(s)	1011, 1223, 2272
BveI	ACCTGC	6 cut(s)	685, 985, 1669, 2398, 2875, 3171
Cac8I	GCNNGC	5 cut(s)	1913, 2088, 2658, 3110, 3168
CaiI	CAGNNNCTG	1 cut(s)	1547
CciI	TCATGA	3 cut(s)	1770, 3052, 3091
CfoI	GCGC	1 cut(s)	2161
Cfr10I	RCCGGY	2 cut(s)	3108, 3479
Cfr13I	GGNCC	6 cut(s)	90, 120, 1461, 3074, 3106, 3121
CseI	GACGC	1 cut(s)	2925
Csp6I	GTAC	6 cut(s)	332, 960, 1149, 1992, 2530, 3144
CviQI	GTAC	6 cut(s)	332, 960, 1149, 1992, 2530, 3144
DrdI	GACNNNNNNGTC	1 cut(s)	776
DseDI	GACNNNNNNGTC	1 cut(s)	776
Eam1104I	CTCTTC	8 cut(s)	963, 1084, 1116, 1177, 2320, 2850, 3299, 3393
EarI	CTCTTC	8 cut(s)	963, 1084, 1116, 1177, 2320, 2850, 3299, 3393
EciI	GGCGGA	1 cut(s)	144
Ecl136II	GAGCTC	2 cut(s)	1852, 1882
Eco130I	CCWWGG	8 cut(s)	102, 116, 297, 1839, 2052, 2709, 3078, 3576
Eco147I	AGGCCT	1 cut(s)	257
Eco24I	GRGCYC	2 cut(s)	1854, 1884
Eco31I	GGTCTC	1 cut(s)	1266
Eco47I	GGWCC	4 cut(s)	90, 1461, 3074, 3121
Eco53kI	GAGCTC	2 cut(s)	1852, 1882
Eco57I	CTGAAG	5 cut(s)	1095, 2003, 2163, 2907, 3259
Eco88I	CYCGRG	1 cut(s)	2367
Eco91I	GGTNACC	1 cut(s)	3540
EcoICRI	GAGCTC	2 cut(s)	1852, 1882
EcoNI	CCTNNNNNAGG	1 cut(s)	1843
EcoO65I	GGTNACC	1 cut(s)	3540
EcoRI	GAATTC	3 cut(s)	716, 898, 1417
EcoRII	CCWGG	6 cut(s)	2038, 2059, 2254, 2353, 2404, 3554
EcoT14I	CCWWGG	8 cut(s)	102, 116, 297, 1839, 2052, 2709, 3078, 3576
EcoT22I	ATGCAT	1 cut(s)	1374
EcoT38I	GRGCYC	2 cut(s)	1854, 1884
ErhI	CCWWGG	8 cut(s)	102, 116, 297, 1839, 2052, 2709, 3078, 3576
FalI	AAGNNNNNCTT	2 cut(s)	3529, 3561
FaqI	GGGAC	1 cut(s)	1088
FauNDI	CATATG	2 cut(s)	271, 459
FbaI	TGATCA	4 cut(s)	793, 2107, 2983, 3094
FblI	GTMKAC	1 cut(s)	2201
Fnu4HI	GCNGC	7 cut(s)	278, 281, 1587, 1922, 2091, 2094, 2882
FriOI	GRGCYC	2 cut(s)	1854, 1884
FseI	GGCCGGCC	1 cut(s)	3112
Fsp4HI	GCNGC	7 cut(s)	278, 281, 1587, 1922, 2091, 2094, 2882
FspBI	CTAG	5 cut(s)	1266, 1413, 1916, 2657, 3114
GlaI	GCGC	1 cut(s)	2160
GluI	GCNGC	7 cut(s)	278, 281, 1587, 1922, 2091, 2094, 2882
GsuI	CTGGAG	5 cut(s)	1712, 2226, 2376, 2939, 3279
HaeIII	GGCC	8 cut(s)	121, 257, 1244, 2064, 2999, 3108, 3112, 3559
HapII	CCGG	9 cut(s)	80, 452, 497, 539, 2435, 2801, 3109, 3444, 3480
HgaI	GACGC	1 cut(s)	2925
HhaI	GCGC	1 cut(s)	2161
Hin1I	GRCGYC	2 cut(s)	2917, 3270
Hin6I	GCGC	1 cut(s)	2159
HinP1I	GCGC	1 cut(s)	2159
HindIII	AAGCTT	1 cut(s)	1871
HpaII	CCGG	9 cut(s)	80, 452, 497, 539, 2435, 2801, 3109, 3444, 3480
HphI	GGTGA	7 cut(s)	204, 907, 1898, 1961, 2117, 2204, 2746
Hpy166II	GTNNAC	3 cut(s)	1256, 2195, 2202
Hpy8I	GTNNAC	3 cut(s)	1256, 2195, 2202
Hpy99I	CGWCG	1 cut(s)	2841
HpyCH4IV	ACGT	6 cut(s)	682, 1020, 1054, 1935, 2337, 3270
HpyF10VI	GCNNNNNNNGC	8 cut(s)	162, 214, 1870, 1879, 1921, 3114, 3341, 3596
HpySE526I	ACGT	6 cut(s)	682, 1020, 1054, 1935, 2337, 3270
Hsp92I	GRCGYC	2 cut(s)	2917, 3270
HspAI	GCGC	1 cut(s)	2159
KpnI	GGTACC	1 cut(s)	335
KroI	GCCGGC	1 cut(s)	3108
KroNI	GCCGGC	1 cut(s)	3110
Ksp22I	TGATCA	4 cut(s)	793, 2107, 2983, 3094
LguI	GCTCTTC	1 cut(s)	2850
LmnI	GCTCC	7 cut(s)	1303, 1478, 1849, 2401, 2560, 2846, 2958
Lsp1109I	GCAGC	4 cut(s)	1573, 1933, 2105, 2893
MaeI	CTAG	5 cut(s)	1266, 1413, 1916, 2657, 3114
MaeII	ACGT	6 cut(s)	682, 1020, 1054, 1935, 2337, 3270
MfeI	CAATTG	2 cut(s)	3132, 3568
MflI	RGATCY	4 cut(s)	1048, 1363, 1835, 2897
MhlI	GDGCHC	6 cut(s)	1483, 1854, 1884, 2691, 2955, 3162
MlyI	GAGTC	4 cut(s)	1770, 2437, 2714, 3014
MmeI	TCCRAC	5 cut(s)	503, 590, 1439, 1770, 2707
Mph1103I	ATGCAT	1 cut(s)	1374
MroNI	GCCGGC	1 cut(s)	3108
MroXI	GAANNNNTTC	3 cut(s)	716, 2016, 2314
MseI	TTAA	4 cut(s)	1158, 2135, 2328, 2700
MslI	CAYNNNNRTG	5 cut(s)	225, 381, 1034, 3069, 3296
MspI	CCGG	9 cut(s)	80, 452, 497, 539, 2435, 2801, 3109, 3444, 3480
MspR9I	CCNGG	7 cut(s)	81, 2040, 2061, 2256, 2355, 2406, 3556
MunI	CAATTG	2 cut(s)	3132, 3568
Mva1269I	GAATGC	1 cut(s)	3238
MvaI	CCWGG	6 cut(s)	2040, 2061, 2256, 2355, 2406, 3556
MwoI	GCNNNNNNNGC	8 cut(s)	162, 214, 1870, 1879, 1921, 3114, 3341, 3596
NaeI	GCCGGC	1 cut(s)	3110
NciI	CCSGG	1 cut(s)	81
NcoI	CCATGG	2 cut(s)	102, 297
NdeI	CATATG	2 cut(s)	271, 459
NgoMIV	GCCGGC	1 cut(s)	3108
NheI	GCTAGC	1 cut(s)	2656
NmeAIII	GCCGAG	1 cut(s)	1254
NmuCI	GTSAC	6 cut(s)	943, 1936, 2440, 2508, 2599, 2626
NsiI	ATGCAT	1 cut(s)	1374
NspI	RCATGY	1 cut(s)	1915
NspV	TTCGAA	1 cut(s)	874
OliI	CACNNNNGTG	1 cut(s)	3296
PaeI	GCATGC	1 cut(s)	1915
PaeR7I	CTCGAG	1 cut(s)	2367
PagI	TCATGA	3 cut(s)	1770, 3052, 3091
PaqCI	CACCTGC	2 cut(s)	685, 3171
PceI	AGGCCT	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	2850
PctI	GAATGC	1 cut(s)	3238
PdiI	GCCGGC	1 cut(s)	3110
PdmI	GAANNNNTTC	3 cut(s)	716, 2016, 2314
PflFI	GACNNNGTC	1 cut(s)	1570
PkrI	GCNGC	7 cut(s)	279, 282, 1588, 1923, 2092, 2095, 2883
Ple19I	CGATCG	1 cut(s)	3339
PleI	GAGTC	4 cut(s)	1770, 2437, 2713, 3013
PpsI	GAGTC	4 cut(s)	1770, 2437, 2713, 3013
Ppu21I	YACGTR	1 cut(s)	1055
PshAI	GACNNNNGTC	1 cut(s)	2001
Psp124BI	GAGCTC	2 cut(s)	1854, 1884
Psp6I	CCWGG	6 cut(s)	2038, 2059, 2254, 2353, 2404, 3554
PspEI	GGTNACC	1 cut(s)	3540
PspGI	CCWGG	6 cut(s)	2038, 2059, 2254, 2353, 2404, 3554
PspPI	GGNCC	6 cut(s)	90, 120, 1461, 3074, 3106, 3121
PspXI	VCTCGAGB	1 cut(s)	2367
PsrI	GAACNNNNNNTAC	2 cut(s)	2800, 2832
PstI	CTGCAG	1 cut(s)	1866
PstNI	CAGNNNCTG	1 cut(s)	1547
PsuI	RGATCY	4 cut(s)	1048, 1363, 1835, 2897
PsyI	GACNNNGTC	1 cut(s)	1570
PvuI	CGATCG	1 cut(s)	3339
RigI	GGCCGGCC	1 cut(s)	3112
RsaI	GTAC	6 cut(s)	333, 961, 1150, 1993, 2531, 3145
RsaNI	GTAC	6 cut(s)	332, 960, 1149, 1992, 2530, 3144
RseI	CAYNNNNRTG	5 cut(s)	225, 381, 1034, 3069, 3296
SacI	GAGCTC	2 cut(s)	1854, 1884
SapI	GCTCTTC	1 cut(s)	2850
SaqAI	TTAA	4 cut(s)	1158, 2135, 2328, 2700
SatI	GCNGC	7 cut(s)	278, 281, 1587, 1922, 2091, 2094, 2882
Sau96I	GGNCC	6 cut(s)	90, 120, 1461, 3074, 3106, 3121
SchI	GAGTC	4 cut(s)	1770, 2437, 2714, 3014
ScrFI	CCNGG	7 cut(s)	81, 2040, 2061, 2256, 2355, 2406, 3556
SduI	GDGCHC	6 cut(s)	1483, 1854, 1884, 2691, 2955, 3162
SfcI	CTRYAG	3 cut(s)	582, 1862, 2117
Sfr274I	CTCGAG	1 cut(s)	2367
SfuI	TTCGAA	1 cut(s)	874
SinI	GGWCC	4 cut(s)	90, 1461, 3074, 3121
SlaI	CTCGAG	1 cut(s)	2367
SmiMI	CAYNNNNRTG	5 cut(s)	225, 381, 1034, 3069, 3296
SmlI	CTYRAG	2 cut(s)	1784, 2367
SmoI	CTYRAG	2 cut(s)	1784, 2367
SphI	GCATGC	1 cut(s)	1915
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	9 cut(s)	129, 215, 245, 278, 281, 903, 2091, 2216, 3239
SspMI	CTAG	5 cut(s)	1266, 1413, 1916, 2657, 3114
SstI	GAGCTC	2 cut(s)	1854, 1884
StuI	AGGCCT	1 cut(s)	257
StyD4I	CCNGG	7 cut(s)	79, 2038, 2059, 2254, 2353, 2404, 3554
StyI	CCWWGG	8 cut(s)	102, 116, 297, 1839, 2052, 2709, 3078, 3576
TaiI	ACGT	6 cut(s)	685, 1023, 1057, 1938, 2340, 3273
TaqI	TCGA	9 cut(s)	337, 429, 656, 874, 2368, 3008, 3339, 3375, 3470
TaqII	GACCGA	1 cut(s)	3059
TatI	WGTACW	2 cut(s)	2529, 3143
TauI	GCSGC	3 cut(s)	280, 283, 2093
Tru1I	TTAA	4 cut(s)	1158, 2135, 2328, 2700
Tru9I	TTAA	4 cut(s)	1158, 2135, 2328, 2700
TseFI	GTSAC	6 cut(s)	943, 1936, 2440, 2508, 2599, 2626
TseI	GCWGC	4 cut(s)	1586, 1921, 2093, 2881
Tsp45I	GTSAC	6 cut(s)	943, 1936, 2440, 2508, 2599, 2626
TspGWI	ACGGA	6 cut(s)	87, 867, 1541, 2645, 2834, 2861
Tth111I	GACNNNGTC	1 cut(s)	1570
VpaK11BI	GGWCC	4 cut(s)	90, 1461, 3074, 3121
XagI	CCTNNNNNAGG	1 cut(s)	1843
XapI	RAATTY	4 cut(s)	561, 716, 898, 1417
XceI	RCATGY	1 cut(s)	1915
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XhoI	CTCGAG	1 cut(s)	2367
XmiI	GTMKAC	1 cut(s)	2201
XmnI	GAANNNNTTC	3 cut(s)	716, 2016, 2314
XspI	CTAG	5 cut(s)	1266, 1413, 1916, 2657, 3114
ZraI	GACGTC	1 cut(s)	3271
Zsp2I	ATGCAT	1 cut(s)	1374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.