Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041976.1

Orthogroup ID

OG0013339

Physical Location & Seq

Genomic Coordinates Reverse (-)

2207 .. 5918

Gene Structure 3712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041976.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3417 bp

atgccaggaaattatcactgctgtgggtgtcctaatcacagccaccagaataagggtgtgaagattgaagaacaagaatcaccggatgttgtcgaaaagatgaatgactcattggttccgggtcagatgacaaattacccttatcctgttgtttggattccaccaggaaacatgaagggtgatgagcaaaggaaactttctggtccggagagtgcagagcaaaagaagaatccaggtgatcatgaaaggcctcctgtgagtttgaaatctcaggaaggagatcaaaggggtggtttgttaccttttgacatggccaatattggatctttgatgcaaggtggaaatggggagcgggttcaggatcaacggagtgaggacagaaaaaaagaatttccatttccaattttctggatgccctcttttgataataagcatgatgaagctggaaagaagggcaaggacatggatgcatctgaggatcagcagactgaagaacaaatgaggcaactcccattccctttcttctggttccctcttgataataaacagaaggatgttggaatggaggaggagaagaatgaggaaaataggaaggttgatgctaatccaaggattgttccagcgaagcacgcagagagtattgacaatgggactggagttaatgaagataaatctgctgggctgggtgttatagacagaaagggaaaagatgctaatcagagagtcataccagtgaagcaaatggatctacctaaaaatgaggacaactctgaagacgctgagagaagaggaagggaagtccctgtgaagcatgtggatgacaatttagctaacaaaacttctggtatcactgttcgaagccggtcctcctccccaaagaagtcatctaggctacctcctgtttgtctgagagtcgatcctttgccaagtacgaagaagaatggcggtggtagttccagatcacctagtcctcctggtcataaaacagttcaaaaagagacttcagcagacacttccaaggcctctgcttcgtttagcttgccagaggactcgcaacaaaatatgaagccccacaattcaagcaatggaaatgaggtagaaccattcaagaaagagaaggttattgatgttatggataagggaatcggcgaaaacaatgattcaatgcatacatctcagattcctgttaattccaaagaggtttcctcaaagccaactggtggggatgccggcaaagatgggaatctatgtgaggtcaatgaggatcaaggcacaggaaagataggagaaacaacagctcagaatgtggaagagacgaagaaaacttcggggtcagttaaatcagttgttgagggaagtaattttgagagaaagatgttatcagatgtagcagcggctgtgcttattcaatctgcctaccgtggattcatggttaggaggtgggaaccattgaagaaattgaagcaattagctgagatacgtgagcaagtggctgatattcggaatcaaatcatatctttggagacctctgatctcagcaaagacgataaacaaagagtggtaatcggggaaaccatcatgagacttcttttaagactggataccattcagggtttgctcccaagtctcagagacataagaagatccttggcaagggagcttgtacttctgcaggaaaagcttgatgatataatgtccaagaaatcccaagacacaacacaagaggtttcctctgttaaaactgtggaagagctcaattccaatggcaacaacagtgtctgcatgtcagagcagcaagcagaggaagcagcaaaagatggtgaagaattccctgctgctgccagcgataacagtcatgttgccacagagccttgccaggggcaggtgacacaaaccatggattctctccctggcatggaagtcgaggtaccagaactctctgaacataaagagctggatacagcatctgagaatggacagcatgaactccctggggcttgtgatctgaattctaaaggtcttgattcaggacctacaatggaatggaaagataacatcgctgatggacaggcagtggcagtggatgcagaaatggccaatgctgctattgagtttgagcaatgtggtgaagctccatctcctgtagaggacacgccagaccatagtgtggtttcaactgcttcaaaagttacaataagtccagagttgcctcaagtagcagttaatactgagcctgctgcttcagagcctgaaaatgttgaagcatcagaaatgagcaaggatgaaatgaaacaaggtggagaagtggaattgaccatgtcacctgatataacttctccaatagccactgatgatgcgactgagaaagaagcggagatgcatgagcttgcagctttgcaattaggcacaactgatgaagacagtggtgctgtttctgaattgaaaaagaatgacgaagtccacatggtgaaagaaaacgatgtctcaaaaagtggggaagaagaaatagtggctctgcaacaacaggagggaacagcggaggagttgaccaagttgggaggcctagttgatgaggaacacacaggagatatggtaattgatccggaggtcgagtaccatcacaaaaacgtagctgctatagatgatcatctgccagcagtctctcaaatggtcgaatcccaaccattgagcttacctgttgaaacaagcgctcgtggagtggtgcatgaaaataggccttcagacctgattgatggtgttgacgcttgcttgcctacagtggttgatgctgacacgcctaatgaggatgaggttgagaaaagtagagaagcctataaagacctgcaagcagtgaccatagaagacgatacagagatgaaagagaacaaagctgaaagcgaagacagcaaagaggatgtcttcactgagaagagtgagccattgcccgcagatgctgaaactgccaaagaggatgtcctcattgagaggagtgagccatttcctgcagatgctgaaactgccaaagagtatgtcctcactgagaagagtgagtcagtgcctgcagatgctgaaactgccaaagaggatgtcctcattgagaagagtgagccattgcctgcatcgccaatcgcgactgaggtttcctccggtgatggaagcgtcatgggagacgaaggtgctaggaagctaatcgaagagaatgagaagctaaaggaaacgatgcagaagttgatggtagcaggaaaagaccaattacgagtgatatccaacctcaccggtagagtgaaagatttggagaaaaagttggccaagaagaagaaattaaggacaaaaaggtgtagggctgcatcatctcggtcttcgtgtgtcaaaccatcaagcaatcacttgaaggagaggactggtgttgcgatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005911 GO:0006457 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009791 GO:0009814 GO:0009817 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010035 GO:0010228 GO:0010506 GO:0010508 GO:0010941 GO:0010942 GO:0012502 GO:0019222 GO:0022414 GO:0030054 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0043067 GO:0043068 GO:0043207 GO:0044237 GO:0044248 GO:0045087 GO:0046677 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0061919 GO:0065007 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG IQ

Protein Analysis

1138

Amino Acids

124.49

Weight (kDa)

4.74

Isoelectric Point (pI)

56.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46240
fragaria_vesca	FvH4_7g15690 FvH4_7g15690
malus_domestica	MD01G1073600.v1.1
prunus_persica	Prupe.2G181700_v2.0.a1
pyrus_communis	pycom01g10280
rosa_chinensis	RchiOBHm_Chr1g0358421
rosa_laevigata	RLG00000027961
rosa_multiflora	Rmu_sc0041976.1_g000002 Rmu_ssc0000348.1_g000008
rosa_roxburghii	Rroxscaffold_4G00297950
rosa_rugosa	Rorug01G0261700 Rorug01G0261800
rosa_samantha	Rh1AG275900 Rh1BG242700 Rh1CG259700 Rh1DG271100
rosa_wichuraiana	Rw1G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1873
Acc36I	ACCTGC	2 cut(s)	1873, 2850
Acc65I	GGTACC	1 cut(s)	1927
AccB1I	GGYRCC	1 cut(s)	1927
AccB7I	CCANNNNNTGG	2 cut(s)	1220, 2167
AccBSI	CCGCTC	1 cut(s)	352
AccII	CGCG	1 cut(s)	3131
AccIII	TCCGGA	2 cut(s)	205, 2602
AciI	CCGC	6 cut(s)	352, 945, 1394, 2372, 2537, 2946
AclWI	GGATC	8 cut(s)	331, 369, 486, 753, 911, 1272, 1638, 2594
AcoI	YGGCCR	3 cut(s)	312, 2094, 3306
AcsI	RAATTY	3 cut(s)	389, 1826, 2008
AcuI	CTGAAG	5 cut(s)	510, 792, 987, 2226, 2724
AdeI	CACNNNGTG	1 cut(s)	2467
AfaI	GTAC	4 cut(s)	931, 1665, 1929, 2615
AfeI	AGCGCT	1 cut(s)	2710
AfiI	CCNNNNNNNGG	7 cut(s)	52, 1220, 1653, 1877, 1882, 1915, 2167
AgeI	ACCGGT	1 cut(s)	3275
AjnI	CCWGG	7 cut(s)	4, 163, 232, 973, 1875, 1909, 1990
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AleI	CACNNNNGTG	1 cut(s)	21
Alw21I	GWGCWC	1 cut(s)	1755
Alw26I	GTCTC	9 cut(s)	992, 1307, 1517, 1576, 1626, 1631, 2488, 2665, 3162
AlwI	GGATC	8 cut(s)	331, 369, 486, 753, 911, 1272, 1638, 2594
AlwNI	CAGNNNCTG	8 cut(s)	1397, 1779, 1967, 2249, 2954, 3011, 3059, 3068
Aor13HI	TCCGGA	2 cut(s)	205, 2602
Aor51HI	AGCGCT	1 cut(s)	2710
AoxI	GGCC	7 cut(s)	248, 312, 1020, 2094, 2560, 2735, 3306
ApoI	RAATTY	3 cut(s)	389, 1826, 2008
ArsI	GACNNNNNNTTYG	8 cut(s)	2901, 2933, 2958, 2990, 3015, 3047, 3072, 3104
AsiGI	ACCGGT	1 cut(s)	3275
Asp718I	GGTACC	1 cut(s)	1927
AspLEI	GCGC	1 cut(s)	2711
AspS9I	GGNCC	3 cut(s)	203, 864, 2030
AsuC2I	CCSGG	1 cut(s)	120
AsuII	TTCGAA	1 cut(s)	856
AvaII	GGWCC	3 cut(s)	203, 864, 2030
BalI	TGGCCA	3 cut(s)	314, 2096, 3308
BanI	GGYRCC	1 cut(s)	1927
BanII	GRGCYC	1 cut(s)	1755
BarI	GAAGNNNNNNTAC	2 cut(s)	1911, 1943
BauI	CACGAG	1 cut(s)	2712
BbsI	GAAGAC	6 cut(s)	780, 2424, 2868, 2907, 2911, 3351
Bbv12I	GWGCWC	1 cut(s)	1755
BcgI	CGANNNNNNTGC	2 cut(s)	1903, 1937
BciT130I	CCWGG	7 cut(s)	6, 165, 234, 975, 1877, 1911, 1992
BciVI	GTATCC	2 cut(s)	1594, 1951
BclI	TGATCA	2 cut(s)	238, 2644
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	9 cut(s)	992, 1307, 1517, 1576, 1626, 1631, 2488, 2665, 3162
BfaI	CTAG	4 cut(s)	888, 966, 2564, 3180
BfmI	CTRYAG	6 cut(s)	1670, 2142, 2637, 2775, 3003, 3060
BfoI	RGCGCY	1 cut(s)	2712
BfuAI	ACCTGC	2 cut(s)	1873, 2850
BfuI	GTATCC	2 cut(s)	1594, 1951
Bme1390I	CCNGG	8 cut(s)	6, 120, 165, 234, 975, 1877, 1911, 1992
Bme18I	GGWCC	3 cut(s)	203, 864, 2030
BmgT120I	GGNCC	3 cut(s)	203, 864, 2030
BmiI	GGNNCC	4 cut(s)	117, 530, 1446, 1929
BmrFI	CCNGG	8 cut(s)	6, 120, 165, 234, 975, 1877, 1911, 1992
BpiI	GAAGAC	6 cut(s)	780, 2424, 2868, 2907, 2911, 3351
BplI	GAGNNNNNCTC	8 cut(s)	752, 784, 1190, 1222, 1715, 1747, 3128, 3160
BpmI	CTGGAG	1 cut(s)	675
Bpu14I	TTCGAA	1 cut(s)	856
BpuEI	CTTGAG	1 cut(s)	2196
BpuMI	CCSGG	1 cut(s)	120
BsaAI	YACGTR	1 cut(s)	1481
BsaBI	GATNNNNATC	4 cut(s)	603, 714, 1242, 2646
BsaI	GGTCTC	1 cut(s)	1517
BsaJI	CCNNGG	9 cut(s)	608, 1017, 1420, 1647, 1876, 1896, 1909, 1990, 1991
BsaWI	WCCGGW	5 cut(s)	82, 205, 2602, 3146, 3275
BsaXI	ACNNNNNCTCC	8 cut(s)	2550, 2577, 2580, 2597, 2607, 2627, 3287, 3317
Bsc4I	CCNNNNNNNGG	7 cut(s)	52, 1220, 1653, 1877, 1882, 1915, 2167
Bse118I	RCCGGY	3 cut(s)	861, 1229, 3275
Bse1I	ACTGG	5 cut(s)	658, 731, 1222, 1602, 3406
Bse3DI	GCAATG	4 cut(s)	1090, 2126, 2939, 3110
Bse8I	GATNNNNATC	4 cut(s)	603, 714, 1242, 2646
BseAI	TCCGGA	2 cut(s)	205, 2602
BseBI	CCWGG	7 cut(s)	6, 165, 234, 975, 1877, 1911, 1992
BseDI	CCNNGG	9 cut(s)	608, 1017, 1420, 1647, 1876, 1896, 1909, 1990, 1991
BseJI	GATNNNNATC	4 cut(s)	603, 714, 1242, 2646
BseLI	CCNNNNNNNGG	7 cut(s)	52, 1220, 1653, 1877, 1882, 1915, 2167
BseMI	GCAATG	4 cut(s)	1090, 2126, 2939, 3110
BseNI	ACTGG	5 cut(s)	658, 731, 1222, 1602, 3406
BseRI	GAGGAG	5 cut(s)	581, 584, 859, 2555, 3001
BseYI	CCCAGC	2 cut(s)	677, 682
BsgI	GTGCAG	1 cut(s)	234
Bsh1236I	CGCG	1 cut(s)	3131
BshFI	GGCC	7 cut(s)	250, 314, 1022, 2096, 2562, 2737, 3308
BshNI	GGYRCC	1 cut(s)	1927
BshTI	ACCGGT	1 cut(s)	3275
BsiHKAI	GWGCWC	1 cut(s)	1755
BsiSI	CCGG	8 cut(s)	83, 119, 206, 862, 1230, 2603, 3147, 3276
BslFI	GGGAC	2 cut(s)	664, 785
BslI	CCNNNNNNNGG	7 cut(s)	52, 1220, 1653, 1877, 1882, 1915, 2167
BsmAI	GTCTC	9 cut(s)	992, 1307, 1517, 1576, 1626, 1631, 2488, 2665, 3162
BsmBI	CGTCTC	2 cut(s)	1307, 3162
BsmFI	GGGAC	2 cut(s)	664, 785
BsnI	GGCC	7 cut(s)	250, 314, 1022, 2096, 2562, 2737, 3308
Bso31I	GGTCTC	1 cut(s)	1517
Bsp119I	TTCGAA	1 cut(s)	856
Bsp1286I	GDGCHC	1 cut(s)	1755
Bsp13I	TCCGGA	2 cut(s)	205, 2602
Bsp19I	CCATGG	1 cut(s)	1896
Bsp68I	TCGCGA	1 cut(s)	3131
BspACI	CCGC	6 cut(s)	352, 945, 1394, 2372, 2537, 2946
BspANI	GGCC	7 cut(s)	250, 314, 1022, 2096, 2562, 2737, 3308
BspEI	TCCGGA	2 cut(s)	205, 2602
BspFNI	CGCG	1 cut(s)	3131
BspHI	TCATGA	2 cut(s)	241, 1578
BspLI	GGNNCC	4 cut(s)	117, 530, 1446, 1929
BspMAI	CTGCAG	3 cut(s)	1674, 3007, 3064
BspMI	ACCTGC	2 cut(s)	1873, 2850
BspPI	GGATC	8 cut(s)	331, 369, 486, 753, 911, 1272, 1638, 2594
BspQI	GCTCTTC	1 cut(s)	1743
BspT104I	TTCGAA	1 cut(s)	856
BspT107I	GGYRCC	1 cut(s)	1927
BspTNI	GGTCTC	1 cut(s)	1517
BsrBI	CCGCTC	1 cut(s)	352
BsrDI	GCAATG	4 cut(s)	1090, 2126, 2939, 3110
BsrFI	RCCGGY	3 cut(s)	861, 1229, 3275
BsrI	ACTGG	5 cut(s)	658, 731, 1222, 1602, 3406
BssAI	RCCGGY	3 cut(s)	861, 1229, 3275
BssECI	CCNNGG	9 cut(s)	608, 1017, 1420, 1647, 1876, 1896, 1909, 1990, 1991
BssSI	CACGAG	1 cut(s)	2712
BssT1I	CCWWGG	4 cut(s)	608, 1017, 1647, 1896
Bst2BI	CACGAG	1 cut(s)	2712
Bst2UI	CCWGG	7 cut(s)	6, 165, 234, 975, 1877, 1911, 1992
Bst4CI	ACNGT	8 cut(s)	853, 988, 1421, 1744, 1775, 1853, 2423, 2779
Bst6I	CTCTTC	7 cut(s)	781, 1305, 1743, 2924, 3038, 3095, 3189
BstAPI	GCANNNNNTGC	1 cut(s)	2084
BstBAI	YACGTR	1 cut(s)	1481
BstBI	TTCGAA	1 cut(s)	856
BstDSI	CCRYGG	2 cut(s)	1420, 1896
BstENI	CCTNNNNNAGG	1 cut(s)	1651
BstFNI	CGCG	1 cut(s)	3131
BstH2I	RGCGCY	1 cut(s)	2712
BstHHI	GCGC	1 cut(s)	2711
BstMAI	GTCTC	9 cut(s)	992, 1307, 1517, 1576, 1626, 1631, 2488, 2665, 3162
BstNI	CCWGG	7 cut(s)	6, 165, 234, 975, 1877, 1911, 1992
BstNSI	RCATGY	2 cut(s)	815, 1786
BstSCI	CCNGG	8 cut(s)	4, 118, 163, 232, 973, 1875, 1909, 1990
BstSFI	CTRYAG	6 cut(s)	1670, 2142, 2637, 2775, 3003, 3060
BstUI	CGCG	1 cut(s)	3131
BstV2I	GAAGAC	6 cut(s)	780, 2424, 2868, 2907, 2911, 3351
BstX2I	RGATCY	3 cut(s)	323, 745, 1643
BstXI	CCANNNNNNTGG	1 cut(s)	408
BstYI	RGATCY	3 cut(s)	323, 745, 1643
BsuI	GTATCC	2 cut(s)	1594, 1951
BsuRI	GGCC	7 cut(s)	250, 314, 1022, 2096, 2562, 2737, 3308
BtgI	CCRYGG	2 cut(s)	1420, 1896
BtgZI	GCGATG	2 cut(s)	2041, 3105
BtsI	GCAGTG	4 cut(s)	16, 2079, 2085, 2856
BtuMI	TCGCGA	1 cut(s)	3131
BveI	ACCTGC	2 cut(s)	1873, 2850
CaiI	CAGNNNCTG	8 cut(s)	1397, 1779, 1967, 2249, 2954, 3011, 3059, 3068
CciI	TCATGA	2 cut(s)	241, 1578
CfoI	GCGC	1 cut(s)	2711
Cfr10I	RCCGGY	3 cut(s)	861, 1229, 3275
Cfr13I	GGNCC	3 cut(s)	203, 864, 2030
CseI	GACGC	3 cut(s)	785, 2771, 3148
Csp6I	GTAC	4 cut(s)	930, 1664, 1928, 2614
CspAI	ACCGGT	1 cut(s)	3275
CviQI	GTAC	4 cut(s)	930, 1664, 1928, 2614
DraIII	CACNNNGTG	1 cut(s)	2467
EaeI	YGGCCR	3 cut(s)	312, 2094, 3306
Eam1104I	CTCTTC	7 cut(s)	781, 1305, 1743, 2924, 3038, 3095, 3189
EarI	CTCTTC	7 cut(s)	781, 1305, 1743, 2924, 3038, 3095, 3189
Ecl136II	GAGCTC	1 cut(s)	1753
Eco130I	CCWWGG	4 cut(s)	608, 1017, 1647, 1896
Eco147I	AGGCCT	4 cut(s)	250, 1022, 2562, 2737
Eco24I	GRGCYC	1 cut(s)	1755
Eco31I	GGTCTC	1 cut(s)	1517
Eco32I	GATATC	1 cut(s)	3264
Eco47I	GGWCC	3 cut(s)	203, 864, 2030
Eco47III	AGCGCT	1 cut(s)	2710
Eco53kI	GAGCTC	1 cut(s)	1753
Eco57I	CTGAAG	5 cut(s)	510, 792, 987, 2226, 2724
EcoICRI	GAGCTC	1 cut(s)	1753
EcoNI	CCTNNNNNAGG	1 cut(s)	1651
EcoO109I	RGGNCCY	1 cut(s)	2030
EcoRI	GAATTC	2 cut(s)	1826, 2008
EcoRII	CCWGG	7 cut(s)	4, 163, 232, 973, 1875, 1909, 1990
EcoRV	GATATC	1 cut(s)	3264
EcoT14I	CCWWGG	4 cut(s)	608, 1017, 1647, 1896
EcoT22I	ATGCAT	3 cut(s)	472, 1170, 2382
EcoT38I	GRGCYC	1 cut(s)	1755
ErhI	CCWWGG	4 cut(s)	608, 1017, 1647, 1896
Esp3I	CGTCTC	2 cut(s)	1307, 3162
FaqI	GGGAC	2 cut(s)	664, 785
FauI	CCCGC	2 cut(s)	345, 2953
FbaI	TGATCA	2 cut(s)	238, 2644
FriOI	GRGCYC	1 cut(s)	1755
FspBI	CTAG	4 cut(s)	888, 966, 2564, 3180
GlaI	GCGC	1 cut(s)	2710
GsaI	CCCAGC	2 cut(s)	681, 686
GsuI	CTGGAG	1 cut(s)	675
HaeII	RGCGCY	1 cut(s)	2712
HaeIII	GGCC	7 cut(s)	250, 314, 1022, 2096, 2562, 2737, 3308
HapII	CCGG	8 cut(s)	83, 119, 206, 862, 1230, 2603, 3147, 3276
HgaI	GACGC	3 cut(s)	785, 2771, 3148
HhaI	GCGC	1 cut(s)	2711
Hin6I	GCGC	1 cut(s)	2709
HinP1I	GCGC	1 cut(s)	2709
HincII	GTYRAC	2 cut(s)	2547, 2761
HindII	GTYRAC	2 cut(s)	2547, 2761
HindIII	AAGCTT	1 cut(s)	1679
HpaII	CCGG	8 cut(s)	83, 119, 206, 862, 1230, 2603, 3147, 3276
Hpy166II	GTNNAC	3 cut(s)	2461, 2547, 2761
Hpy8I	GTNNAC	3 cut(s)	2461, 2547, 2761
HpyCH4III	ACNGT	8 cut(s)	853, 988, 1421, 1744, 1775, 1853, 2423, 2779
HpyCH4IV	ACGT	2 cut(s)	1480, 2628
HpySE526I	ACGT	2 cut(s)	1480, 2628
HspAI	GCGC	1 cut(s)	2709
Kpn2I	TCCGGA	2 cut(s)	205, 2602
KpnI	GGTACC	1 cut(s)	1931
KroI	GCCGGC	1 cut(s)	1229
KroNI	GCCGGC	1 cut(s)	1231
Ksp22I	TGATCA	2 cut(s)	238, 2644
LguI	GCTCTTC	1 cut(s)	1743
LmnI	GCTCC	4 cut(s)	349, 1623, 1657, 2137
MaeI	CTAG	4 cut(s)	888, 966, 2564, 3180
MaeII	ACGT	2 cut(s)	1480, 2628
MaeIII	GTNAC	5 cut(s)	297, 1885, 2188, 2319, 2851
MbiI	CCGCTC	1 cut(s)	352
MflI	RGATCY	3 cut(s)	323, 745, 1643
MhlI	GDGCHC	1 cut(s)	1755
MlsI	TGGCCA	3 cut(s)	314, 2096, 3308
MluNI	TGGCCA	3 cut(s)	314, 2096, 3308
MlyI	GAGTC	5 cut(s)	101, 732, 921, 1043, 3059
MmeI	TCCRAC	2 cut(s)	538, 3291
Mox20I	TGGCCA	3 cut(s)	314, 2096, 3308
Mph1103I	ATGCAT	3 cut(s)	472, 1170, 2382
MroI	TCCGGA	2 cut(s)	205, 2602
MroNI	GCCGGC	1 cut(s)	1229
MscI	TGGCCA	3 cut(s)	314, 2096, 3308
MseI	TTAA	7 cut(s)	660, 1188, 1338, 1592, 1737, 2223, 3323
MslI	CAYNNNNRTG	3 cut(s)	21, 731, 816
Msp20I	TGGCCA	3 cut(s)	314, 2096, 3308
MspA1I	CMGCKG	2 cut(s)	1394, 2537
MspI	CCGG	8 cut(s)	83, 119, 206, 862, 1230, 2603, 3147, 3276
MspR9I	CCNGG	8 cut(s)	6, 120, 165, 234, 975, 1877, 1911, 1992
MvaI	CCWGG	7 cut(s)	6, 165, 234, 975, 1877, 1911, 1992
MvnI	CGCG	1 cut(s)	3131
NaeI	GCCGGC	1 cut(s)	1231
NciI	CCSGG	1 cut(s)	120
NcoI	CCATGG	1 cut(s)	1896
NgoMIV	GCCGGC	1 cut(s)	1229
NlaIV	GGNNCC	4 cut(s)	117, 530, 1446, 1929
NmuCI	GTSAC	3 cut(s)	1885, 2319, 2851
NruI	TCGCGA	1 cut(s)	3131
NsiI	ATGCAT	3 cut(s)	472, 1170, 2382
NspI	RCATGY	2 cut(s)	815, 1786
NspV	TTCGAA	1 cut(s)	856
OliI	CACNNNNGTG	1 cut(s)	21
PagI	TCATGA	2 cut(s)	241, 1578
PaqCI	CACCTGC	1 cut(s)	1873
PasI	CCCWGGG	1 cut(s)	1991
PceI	AGGCCT	4 cut(s)	250, 1022, 2562, 2737
PciSI	GCTCTTC	1 cut(s)	1743
PcsI	WCGNNNNNNNCGW	1 cut(s)	3128
PdiI	GCCGGC	1 cut(s)	1231
PflFI	GACNNNGTC	2 cut(s)	2317, 2456
PflMI	CCANNNNNTGG	2 cut(s)	1220, 2167
PinAI	ACCGGT	1 cut(s)	3275
PleI	GAGTC	5 cut(s)	101, 731, 920, 1043, 3058
PpsI	GAGTC	5 cut(s)	101, 731, 920, 1043, 3058
Ppu21I	YACGTR	1 cut(s)	1481
PpuMI	RGGWCCY	1 cut(s)	2030
Psp124BI	GAGCTC	1 cut(s)	1755
Psp5II	RGGWCCY	1 cut(s)	2030
Psp6I	CCWGG	7 cut(s)	4, 163, 232, 973, 1875, 1909, 1990
PspFI	CCCAGC	2 cut(s)	677, 682
PspGI	CCWGG	7 cut(s)	4, 163, 232, 973, 1875, 1909, 1990
PspN4I	GGNNCC	4 cut(s)	117, 530, 1446, 1929
PspPI	GGNCC	3 cut(s)	203, 864, 2030
PspPPI	RGGWCCY	1 cut(s)	2030
PstI	CTGCAG	3 cut(s)	1674, 3007, 3064
PstNI	CAGNNNCTG	8 cut(s)	1397, 1779, 1967, 2249, 2954, 3011, 3059, 3068
PsuI	RGATCY	3 cut(s)	323, 745, 1643
PsyI	GACNNNGTC	2 cut(s)	2317, 2456
RruI	TCGCGA	1 cut(s)	3131
RsaI	GTAC	4 cut(s)	931, 1665, 1929, 2615
RsaNI	GTAC	4 cut(s)	930, 1664, 1928, 2614
RseI	CAYNNNNRTG	3 cut(s)	21, 731, 816
SacI	GAGCTC	1 cut(s)	1755
SapI	GCTCTTC	1 cut(s)	1743
SaqAI	TTAA	7 cut(s)	660, 1188, 1338, 1592, 1737, 2223, 3323
Sau96I	GGNCC	3 cut(s)	203, 864, 2030
SchI	GAGTC	5 cut(s)	101, 732, 921, 1043, 3059
ScrFI	CCNGG	8 cut(s)	6, 120, 165, 234, 975, 1877, 1911, 1992
SduI	GDGCHC	1 cut(s)	1755
SfcI	CTRYAG	6 cut(s)	1670, 2142, 2637, 2775, 3003, 3060
SfuI	TTCGAA	1 cut(s)	856
SinI	GGWCC	3 cut(s)	203, 864, 2030
SmiMI	CAYNNNNRTG	3 cut(s)	21, 731, 816
SmlI	CTYRAG	1 cut(s)	2211
SmoI	CTYRAG	1 cut(s)	2211
SseBI	AGGCCT	4 cut(s)	250, 1022, 2562, 2737
SsiI	CCGC	6 cut(s)	352, 945, 1394, 2372, 2537, 2946
SspI	AATATT	1 cut(s)	319
SspMI	CTAG	4 cut(s)	888, 966, 2564, 3180
SstI	GAGCTC	1 cut(s)	1755
StuI	AGGCCT	4 cut(s)	250, 1022, 2562, 2737
StyD4I	CCNGG	8 cut(s)	4, 118, 163, 232, 973, 1875, 1909, 1990
StyI	CCWWGG	4 cut(s)	608, 1017, 1647, 1896
TaaI	ACNGT	8 cut(s)	853, 988, 1421, 1744, 1775, 1853, 2423, 2779
TaiI	ACGT	2 cut(s)	1483, 2631
TaqI	TCGA	7 cut(s)	93, 856, 915, 1923, 2610, 2673, 3192
TaqII	GACCGA	1 cut(s)	3345
TatI	WGTACW	1 cut(s)	1663
TauI	GCSGC	1 cut(s)	1397
Tru1I	TTAA	7 cut(s)	660, 1188, 1338, 1592, 1737, 2223, 3323
Tru9I	TTAA	7 cut(s)	660, 1188, 1338, 1592, 1737, 2223, 3323
TseFI	GTSAC	3 cut(s)	1885, 2319, 2851
Tsp45I	GTSAC	3 cut(s)	1885, 2319, 2851
TspGWI	ACGGA	1 cut(s)	382
Tth111I	GACNNNGTC	2 cut(s)	2317, 2456
Van91I	CCANNNNNTGG	2 cut(s)	1220, 2167
VpaK11BI	GGWCC	3 cut(s)	203, 864, 2030
XagI	CCTNNNNNAGG	1 cut(s)	1651
XapI	RAATTY	3 cut(s)	389, 1826, 2008
XceI	RCATGY	2 cut(s)	815, 1786
XspI	CTAG	4 cut(s)	888, 966, 2564, 3180
Zsp2I	ATGCAT	3 cut(s)	472, 1170, 2382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.