Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0013339

Physical Location & Seq

Genomic Coordinates Reverse (-)

17222390 .. 17226400

Gene Structure 4011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027961

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3717 bp

ATGATGCCGATGTACAGATACATGGATTCACACCCCGAGCAAAAAAACCAGACCTTCTCTTTCCCTCAATATCCTTATCCGCCTTTCCAACCAAATCCACCTACGGCATGTATACCATGGCCTTATGGTGGCAACTTTGGCTACCCAAACCCTGTGCCGTGCTATTCTTGCTGTAACCATGGTAATGCTCCTGGTTATAATGGTTTCAGACCCTCCTACCCTCAAACTGCAATGCCATCACCAGTACATTTTGCTGGTGGTTATCCTGCTCCATATCATGAAGCCTACCCTGTTCAATATGTCCCGCCTCCTCATTACTCTATGGAGCTTCCTCGATATGATTATGACAAGAAGATGCCAGGAAATTACCACTGCTGTGGGTGTCCTAATCACAGCCACCAGAATAAGGGTGTGAAGATTGAAGAACAAGAATCACCGGATGTTGTCGAAAAGGTGAATGACTCATTGGTTCGGGATCAGATGACAAATTACCCTTATCCTGTTGTTTGGATTCCACCAGGAAACATGAAGGGTGAGGAGCAGAGGACACTTTCTGGTCCGGAGATTGTAGAGCAAAAGAAGAATCCAGGTGATGCAAGGCCTCCTGTGAGTTTGAAATCACAGGAAGGAGATCAAAAGCGTGGTTTGTTACCTTTTGATGTTGGATCTTTGATGCAAGATGGAAATGGGGAGCGGGTTCAGGATCAACGGAGTGAGGACAGAAAAAAAGAATTTCCATTTCCAATTTTCTGGATGCCCTCTTATGATAATAAGCATGATGGAGCTGGAAAGAAGGACAAGGACATGGATGCATCTCAGGATCAGCAGACTGAAGAACGAATGAGGCAACTCCCATTCCCTTTCTTCTGGTTCCCTCTTGATAATAAACAGAAGGATGTTGGAATGGAGGAGGAGAAGAATGAGGAAGATAGGAAGGTTGATGCTAACCCAAGGATTGTTCCAACGAAGCACGCTGAGAGTAGTGACAATGGGACTGGAGTTAATGAAGATAAATCTGCTGGGCTGGGTGTTCTAGACAGAAAGGGAAAAGATGCTAATCAGAGAGTCATACCAGTGAGGCAAATGGATCTACCTAAAAAGGAGGACAACTCTGAAGACACTAAGAGAAGAGGAAGAGAAGTCCATGTGAAGCATGCGGATGACAATTTAGCTGACAAACCTTCTGGTAGCAGTGTTCGAAGCCAGTCCTCATCCGCAAAGACGTCATCTAGACTACCTCCTGTTTGTCTGAGAGTCGATCCTTTGCCAAGTAAGAAGAAGAATGGCGGTGGTAGTTCCAGATCTCCTAGTCCTCCTGGTCGTAAAAAAGTTCAAAAAGAGACTTTAGCAGACACTTCCAAGGCCTCTGCTTCGTGTAGCTTGCCAGAGAACTCACAACAAAATCTGAGGGCCCACATTTCAGGCAATGGAAAGGAGGTAGAGCCATGCAAGAAAGGGAAGGTTATTGATGTTGTGGATAAGGGAATCGGCGAAAACAATGATTCAATGCATGCATCTCAGATTCCTGTTAATTCCAAAGAGGTTTCCTCAAAGCCAACTGTTGGGGAAGCCGGCAAAGATGGGAATCAATGTGAGGTCAATGAGGATCACGGCACAGGAAAGATAGGGGAAACAACAGCTCAGAATGTGGAAGAGACGAAGAAAACTTCAGGGTCAGTTAAATCAGTTGTTGAGGGAAGTAATTTTGAGAGAAAGATGTTATCAGATGTAGCAGCTGCTGTGCTTATTCAGTCTGCCTACCGTGGATTCATGGTTAGGAGGTGGGAACCATTGAAGAAATTGAAGCAAATAGCTGAGATACGTGAGCAAGTGGCTGATATTCGGAATCAAATCATATCTTTGGAGACCTCTGATCTCAACAAAGATGATAAACAAAGAGTGGTAATCGGGGAAACCATCATGAGACTTCTTTTAAGACTGGATACCATTCAGGGTTTGCTCCCAAGTCTCAGAGACATACGAAGATCCTTGGCAAGGGAGCTTGTACTTCTGCAGGAAAAGCTTGATGATATAATGTCTAAGAAATCCCAAGACACAACACAAGAGGTGTCCTCTGTTAAAACTGTGGAAGAGCTCAATGCCAATGGCAACAACAGTGTCTGCAGGTCAGAGCAGCAAGCAGAGGAAGCAGCAAAAGATGGTGAAGAATTCCCTGCTGCTGCCAGCGATAACAGTCATGTTGCCACAGAGCCTTGCCAGGGGCAGGTGACACAAACCATGGATTCTCTCCCTGGTGTGGAGGTCGAGGTACCAGAACTCTCTGAACATAAAGAGCTGGATACAGCATCTGAGAATGGACAGCATGAACTCCCTGGGGCTTGTGATCTGAATTCTAAAGGTCTTGATTCAGGACCTACAATGGAATGGAAAGACAACATCGCTGATGGACAGCTTAGTGATGGACAGGCAGTGGCGGTGGATGCAGAAATGGCCAATGGTGCTACTGAGTTTGAGCAATGTGGTGAAGCTCCATCTCCTGTAGAGGACACGCCAGACCATAGTGTGGTTTCAACTGCTTCAGAAGTTACAATAAGTCCAGAGTTGCCTCAAGTAGCAGTTAATACTGAGCCTGCTGCTTCAGAGCCTGAAAATGTTGAAGCATCAGAAATGAGCAAGGATGAAATGAAACAAGGTGGAGAAGTGGAATTGACCATGTCACCTGATATTACTTCTCCAATAGCCACTGATGATGCGACTGAGAAAGAAGCGGAGATGCATGAGCTTGCAGCTTTGCAACTAGGCACAACTGATGAAGACAGTGGTGCTGTTTCTGAATTGAAAAAGAACGAAGAAGTCCACATGGTGAAAGAAAACGATGTCTCAAAAAGTGGGGAAGAAGAAATAGTGGCTCTGCAACAAGAGGAGGGAACAGCGGAGGAGTTGACCAAGTTGGGAGGCCTAGTTGATGAGGAACACACAGGAGATAAGGTAATTGATCCAGAGGTTGAGCACCGTCACAAAAATGAAGCTGCTATAGATGATCATCTGCCAGCAGTCTCTCAAATGGTCGAATCCCAACCATTGAGCTTACCTGTTGAAACAAGCACTCGTGGAGTGGTGCATGAAAATAGGCCTTCAGACCTGATTGATGGTGTTAACGCTTACTTGCCTACAGTGGTTGATGCTGACACGCCTAATGAGGATGAGGTTGAGAAAAGTAGAGAAGCCTATAAAGACCTGCAAGCAGTGACCATAGAAGACGATACAGAGATGAAAGAGAACAAAGCTGAAAGCGAAGACAGCAAAGAGGATGTCTTCACTGAGAAGAGTGAGCCATTGCCCGCAGATGCTGAAACTGCCAAAGAGGATGTCCTCATTGAGAAGAGTGAGCCATTGCCTGCAGATGCTGAAACTGCCAAAGAGGATGTCCTCACTGAGAAGAGTGCGCCATTGCCTGCATCACCAATCACAACTGAGGTTTCCTCCGGTGATGGAAGCGTCGTGGGAGACGAAGGTGCTAGGAAGTTAATTAAGGAGAATGAGAAGCTGAGGGAAACGATGCAGAAGTTGATGGTAGCAGGGAAAGACCAACTACAAGTGATATCCAACCTCACCGGTAGAGTGAAAGATTTGGAGAAAAAGTTGGCCAAGAAGAAGAAATTAAGGACAAAAAGGTGTAGGGCTGCATCATCTCGGTCTTCGTGTGTCAAACCATCAAGCAATCACTTGAAGGAGAGGGCTGGTGTTGCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005911 GO:0006457 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009791 GO:0009814 GO:0009817 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010035 GO:0010228 GO:0010506 GO:0010508 GO:0010941 GO:0010942 GO:0012502 GO:0019222 GO:0022414 GO:0030054 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0043067 GO:0043068 GO:0043207 GO:0044237 GO:0044248 GO:0045087 GO:0046677 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0061919 GO:0065007 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG IQ

Protein Analysis

1239

Amino Acids

136.1

Weight (kDa)

4.9

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	604 - 677	7.6e-09	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46240
fragaria_vesca	FvH4_7g15690 FvH4_7g15690
malus_domestica	MD01G1073600.v1.1
prunus_persica	Prupe.2G181700_v2.0.a1
pyrus_communis	pycom01g10280
rosa_chinensis	RchiOBHm_Chr1g0358421
rosa_laevigata	RLG00000027961
rosa_multiflora	Rmu_sc0041976.1_g000002 Rmu_ssc0000348.1_g000008
rosa_roxburghii	Rroxscaffold_4G00297950
rosa_rugosa	Rorug01G0261700 Rorug01G0261800
rosa_samantha	Rh1AG275900 Rh1BG242700 Rh1CG259700 Rh1DG271100
rosa_wichuraiana	Rw1G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
AarI	CACCTGC	1 cut(s)	2215
AatII	GACGTC	1 cut(s)	1226
Acc36I	ACCTGC	3 cut(s)	2115, 2215, 3207
Acc65I	GGTACC	1 cut(s)	2269
AccB1I	GGYRCC	1 cut(s)	2269
AccB7I	CCANNNNNTGG	2 cut(s)	1562, 2524
AccBSI	CCGCTC	1 cut(s)	694
AccI	GTMKAC	1 cut(s)	112
AccIII	TCCGGA	1 cut(s)	559
AclWI	GGATC	9 cut(s)	483, 673, 711, 828, 1095, 1253, 1614, 1980, 2951
AcoI	YGGCCR	2 cut(s)	2451, 3606
AcsI	RAATTY	3 cut(s)	731, 2168, 2350
AcuI	CTGAAG	6 cut(s)	852, 1134, 1653, 2523, 2583, 3081
AcyI	GRCGYC	1 cut(s)	1223
AdeI	CACNNNGTG	1 cut(s)	2824
AfaI	GTAC	4 cut(s)	14, 246, 2007, 2271
AfiI	CCNNNNNNNGG	8 cut(s)	128, 406, 1562, 1995, 2219, 2224, 2257, 2524
AgeI	ACCGGT	1 cut(s)	3575
AjnI	CCWGG	8 cut(s)	190, 358, 517, 586, 1315, 2217, 2251, 2332
AjuI	GAANNNNNNNTTGG	2 cut(s)	449, 481
AleI	CACNNNNGTG	1 cut(s)	375
Alw21I	GWGCWC	2 cut(s)	2097, 2973
Alw26I	GTCTC	9 cut(s)	1334, 1649, 1859, 1918, 1968, 1973, 2845, 3022, 3462
AlwI	GGATC	9 cut(s)	483, 673, 711, 828, 1095, 1253, 1614, 1980, 2951
AlwNI	CAGNNNCTG	6 cut(s)	1739, 2121, 2309, 2606, 3311, 3368
Ama87I	CYCGRG	1 cut(s)	35
Aor13HI	TCCGGA	1 cut(s)	559
AoxI	GGCC	8 cut(s)	119, 599, 1362, 1410, 2451, 2917, 3092, 3606
ApaI	GGGCCC	1 cut(s)	1414
ApoI	RAATTY	3 cut(s)	731, 2168, 2350
ArsI	GACNNNNNNTTYG	6 cut(s)	3258, 3290, 3315, 3347, 3372, 3404
AsiGI	ACCGGT	1 cut(s)	3575
Asp718I	GGTACC	1 cut(s)	2269
AspLEI	GCGC	1 cut(s)	3409
AspS9I	GGNCC	4 cut(s)	557, 1410, 1411, 2372
AsuII	TTCGAA	1 cut(s)	1198
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	2 cut(s)	557, 2372
BaeGI	GKGCMC	1 cut(s)	1414
BalI	TGGCCA	2 cut(s)	2453, 3608
BanI	GGYRCC	1 cut(s)	2269
BanII	GRGCYC	2 cut(s)	1414, 2097
BauI	CACGAG	1 cut(s)	3069
BbsI	GAAGAC	6 cut(s)	1122, 2781, 3225, 3264, 3268, 3651
Bbv12I	GWGCWC	2 cut(s)	2097, 2973
BbvCI	CCTCAGC	1 cut(s)	3509
BceAI	ACGGC	3 cut(s)	120, 142, 1627
BciT130I	CCWGG	8 cut(s)	192, 360, 519, 588, 1317, 2219, 2253, 2334
BciVI	GTATCC	2 cut(s)	1936, 2293
BclI	TGATCA	1 cut(s)	3001
BcoDI	GTCTC	9 cut(s)	1334, 1649, 1859, 1918, 1968, 1973, 2845, 3022, 3462
BfaI	CTAG	6 cut(s)	1034, 1230, 1308, 2759, 2921, 3480
BfmI	CTRYAG	6 cut(s)	2012, 2122, 2499, 2994, 3132, 3360
BfuAI	ACCTGC	3 cut(s)	2115, 2215, 3207
BfuI	GTATCC	2 cut(s)	1936, 2293
BglII	AGATCT	1 cut(s)	1301
Bme1390I	CCNGG	8 cut(s)	192, 360, 519, 588, 1317, 2219, 2253, 2334
Bme18I	GGWCC	2 cut(s)	557, 2372
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	4 cut(s)	557, 1410, 1411, 2372
BmiI	GGNNCC	4 cut(s)	872, 1412, 1788, 2271
BmrFI	CCNGG	8 cut(s)	192, 360, 519, 588, 1317, 2219, 2253, 2334
BpiI	GAAGAC	6 cut(s)	1122, 2781, 3225, 3264, 3268, 3651
BplI	GAGNNNNNCTC	8 cut(s)	1094, 1126, 1532, 1564, 2057, 2089, 3428, 3460
BpmI	CTGGAG	1 cut(s)	1017
Bpu10I	CCTNAGC	1 cut(s)	3509
Bpu14I	TTCGAA	1 cut(s)	1198
BpuEI	CTTGAG	1 cut(s)	2553
BsaAI	YACGTR	1 cut(s)	1823
BsaBI	GATNNNNATC	3 cut(s)	1056, 1584, 3003
BsaHI	GRCGYC	1 cut(s)	1223
BsaI	GGTCTC	1 cut(s)	1859
BsaWI	WCCGGW	4 cut(s)	436, 559, 3446, 3575
BsaXI	ACNNNNNCTCC	6 cut(s)	2907, 2934, 2937, 2964, 3587, 3617
Bsc4I	CCNNNNNNNGG	8 cut(s)	128, 406, 1562, 1995, 2219, 2224, 2257, 2524
Bse118I	RCCGGY	2 cut(s)	1571, 3575
Bse1I	ACTGG	5 cut(s)	242, 1000, 1073, 1204, 1944
Bse3DI	GCAATG	7 cut(s)	237, 1432, 2483, 3296, 3353, 3410, 3717
Bse8I	GATNNNNATC	3 cut(s)	1056, 1584, 3003
BseAI	TCCGGA	1 cut(s)	559
BseBI	CCWGG	8 cut(s)	192, 360, 519, 588, 1317, 2219, 2253, 2334
BseJI	GATNNNNATC	3 cut(s)	1056, 1584, 3003
BseLI	CCNNNNNNNGG	8 cut(s)	128, 406, 1562, 1995, 2219, 2224, 2257, 2524
BseMI	GCAATG	7 cut(s)	237, 1432, 2483, 3296, 3353, 3410, 3717
BseNI	ACTGG	5 cut(s)	242, 1000, 1073, 1204, 1944
BseRI	GAGGAG	6 cut(s)	300, 551, 923, 926, 2897, 2912
BseSI	GKGCMC	1 cut(s)	1414
BseYI	CCCAGC	2 cut(s)	1019, 1024
BshFI	GGCC	8 cut(s)	121, 601, 1364, 1412, 2453, 2919, 3094, 3608
BshNI	GGYRCC	1 cut(s)	2269
BshTI	ACCGGT	1 cut(s)	3575
BsiHKAI	GWGCWC	2 cut(s)	2097, 2973
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	5 cut(s)	437, 560, 1572, 3447, 3576
BslFI	GGGAC	2 cut(s)	287, 1006
BslI	CCNNNNNNNGG	8 cut(s)	128, 406, 1562, 1995, 2219, 2224, 2257, 2524
BsmAI	GTCTC	9 cut(s)	1334, 1649, 1859, 1918, 1968, 1973, 2845, 3022, 3462
BsmBI	CGTCTC	2 cut(s)	1649, 3462
BsmFI	GGGAC	2 cut(s)	287, 1006
BsnI	GGCC	8 cut(s)	121, 601, 1364, 1412, 2453, 2919, 3094, 3608
Bso31I	GGTCTC	1 cut(s)	1859
BsoBI	CYCGRG	1 cut(s)	35
Bsp119I	TTCGAA	1 cut(s)	1198
Bsp120I	GGGCCC	1 cut(s)	1410
Bsp1286I	GDGCHC	3 cut(s)	1414, 2097, 2973
Bsp13I	TCCGGA	1 cut(s)	559
Bsp1407I	TGTACA	1 cut(s)	12
Bsp19I	CCATGG	3 cut(s)	116, 178, 2238
BspANI	GGCC	8 cut(s)	121, 601, 1364, 1412, 2453, 2919, 3094, 3608
BspEI	TCCGGA	1 cut(s)	559
BspHI	TCATGA	2 cut(s)	277, 1920
BspLI	GGNNCC	4 cut(s)	872, 1412, 1788, 2271
BspMAI	CTGCAG	3 cut(s)	2016, 2126, 3364
BspMI	ACCTGC	3 cut(s)	2115, 2215, 3207
BspPI	GGATC	9 cut(s)	483, 673, 711, 828, 1095, 1253, 1614, 1980, 2951
BspQI	GCTCTTC	1 cut(s)	2085
BspT104I	TTCGAA	1 cut(s)	1198
BspT107I	GGYRCC	1 cut(s)	2269
BspTNI	GGTCTC	1 cut(s)	1859
BsrBI	CCGCTC	1 cut(s)	694
BsrDI	GCAATG	7 cut(s)	237, 1432, 2483, 3296, 3353, 3410, 3717
BsrFI	RCCGGY	2 cut(s)	1571, 3575
BsrGI	TGTACA	1 cut(s)	12
BsrI	ACTGG	5 cut(s)	242, 1000, 1073, 1204, 1944
BssAI	RCCGGY	2 cut(s)	1571, 3575
BssNAI	GTATAC	1 cut(s)	113
BssNI	GRCGYC	1 cut(s)	1223
BssSI	CACGAG	1 cut(s)	3069
BssT1I	CCWWGG	6 cut(s)	116, 178, 950, 1359, 1989, 2238
Bst1107I	GTATAC	1 cut(s)	113
Bst2BI	CACGAG	1 cut(s)	3069
Bst2UI	CCWGG	8 cut(s)	192, 360, 519, 588, 1317, 2219, 2253, 2334
Bst4CI	ACNGT	8 cut(s)	1561, 1763, 2086, 2117, 2195, 2780, 2975, 3136
Bst6I	CTCTTC	7 cut(s)	1123, 1129, 1647, 2085, 3281, 3338, 3395
BstACI	GRCGYC	1 cut(s)	1223
BstAUI	TGTACA	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	1823
BstBI	TTCGAA	1 cut(s)	1198
BstDSI	CCRYGG	4 cut(s)	116, 178, 1762, 2238
BstENI	CCTNNNNNAGG	1 cut(s)	1993
BstHHI	GCGC	1 cut(s)	3409
BstMAI	GTCTC	9 cut(s)	1334, 1649, 1859, 1918, 1968, 1973, 2845, 3022, 3462
BstNI	CCWGG	8 cut(s)	192, 360, 519, 588, 1317, 2219, 2253, 2334
BstNSI	RCATGY	3 cut(s)	111, 1157, 1514
BstSCI	CCNGG	8 cut(s)	190, 358, 517, 586, 1315, 2217, 2251, 2332
BstSFI	CTRYAG	6 cut(s)	2012, 2122, 2499, 2994, 3132, 3360
BstSLI	GKGCMC	1 cut(s)	1414
BstV2I	GAAGAC	6 cut(s)	1122, 2781, 3225, 3264, 3268, 3651
BstX2I	RGATCY	4 cut(s)	665, 1087, 1301, 1985
BstXI	CCANNNNNNTGG	2 cut(s)	377, 750
BstYI	RGATCY	4 cut(s)	665, 1087, 1301, 1985
BstZ17I	GTATAC	1 cut(s)	113
BsuI	GTATCC	2 cut(s)	1936, 2293
BsuRI	GGCC	8 cut(s)	121, 601, 1364, 1412, 2453, 2919, 3094, 3608
BtgI	CCRYGG	4 cut(s)	116, 178, 1762, 2238
BtgZI	GCGATG	1 cut(s)	2383
BtsI	GCAGTG	4 cut(s)	370, 1198, 2436, 3213
BveI	ACCTGC	3 cut(s)	2115, 2215, 3207
CaiI	CAGNNNCTG	6 cut(s)	1739, 2121, 2309, 2606, 3311, 3368
CciI	TCATGA	2 cut(s)	277, 1920
CfoI	GCGC	1 cut(s)	3409
Cfr10I	RCCGGY	2 cut(s)	1571, 3575
Cfr13I	GGNCC	4 cut(s)	557, 1410, 1411, 2372
CseI	GACGC	1 cut(s)	3448
Csp6I	GTAC	4 cut(s)	13, 245, 2006, 2270
CspAI	ACCGGT	1 cut(s)	3575
CviQI	GTAC	4 cut(s)	13, 245, 2006, 2270
DraIII	CACNNNGTG	1 cut(s)	2824
EaeI	YGGCCR	2 cut(s)	2451, 3606
Eam1104I	CTCTTC	7 cut(s)	1123, 1129, 1647, 2085, 3281, 3338, 3395
EarI	CTCTTC	7 cut(s)	1123, 1129, 1647, 2085, 3281, 3338, 3395
EciI	GGCGGA	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	2095
Eco130I	CCWWGG	6 cut(s)	116, 178, 950, 1359, 1989, 2238
Eco147I	AGGCCT	4 cut(s)	601, 1364, 2919, 3094
Eco24I	GRGCYC	2 cut(s)	1414, 2097
Eco31I	GGTCTC	1 cut(s)	1859
Eco32I	GATATC	1 cut(s)	3564
Eco47I	GGWCC	2 cut(s)	557, 2372
Eco53kI	GAGCTC	1 cut(s)	2095
Eco57I	CTGAAG	6 cut(s)	852, 1134, 1653, 2523, 2583, 3081
Eco88I	CYCGRG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	2095
EcoNI	CCTNNNNNAGG	1 cut(s)	1993
EcoO109I	RGGNCCY	2 cut(s)	1410, 2372
EcoRI	GAATTC	2 cut(s)	2168, 2350
EcoRII	CCWGG	8 cut(s)	190, 358, 517, 586, 1315, 2217, 2251, 2332
EcoRV	GATATC	1 cut(s)	3564
EcoT14I	CCWWGG	6 cut(s)	116, 178, 950, 1359, 1989, 2238
EcoT22I	ATGCAT	4 cut(s)	814, 1512, 1516, 2739
EcoT38I	GRGCYC	2 cut(s)	1414, 2097
ErhI	CCWWGG	6 cut(s)	116, 178, 950, 1359, 1989, 2238
Esp3I	CGTCTC	2 cut(s)	1649, 3462
FaqI	GGGAC	2 cut(s)	287, 1006
FauI	CCCGC	3 cut(s)	312, 687, 3310
FbaI	TGATCA	1 cut(s)	3001
FblI	GTMKAC	1 cut(s)	112
FriOI	GRGCYC	2 cut(s)	1414, 2097
FspBI	CTAG	6 cut(s)	1034, 1230, 1308, 2759, 2921, 3480
GlaI	GCGC	1 cut(s)	3408
GsaI	CCCAGC	2 cut(s)	1023, 1028
GsuI	CTGGAG	1 cut(s)	1017
HaeIII	GGCC	8 cut(s)	121, 601, 1364, 1412, 2453, 2919, 3094, 3608
HapII	CCGG	5 cut(s)	437, 560, 1572, 3447, 3576
HgaI	GACGC	1 cut(s)	3448
HhaI	GCGC	1 cut(s)	3409
Hin1I	GRCGYC	1 cut(s)	1223
Hin6I	GCGC	1 cut(s)	3407
HinP1I	GCGC	1 cut(s)	3407
HincII	GTYRAC	2 cut(s)	2904, 3118
HindII	GTYRAC	2 cut(s)	2904, 3118
HindIII	AAGCTT	1 cut(s)	2021
HpaI	GTTAAC	1 cut(s)	3118
HpaII	CCGG	5 cut(s)	437, 560, 1572, 3447, 3576
Hpy166II	GTNNAC	4 cut(s)	113, 2818, 2904, 3118
Hpy8I	GTNNAC	4 cut(s)	113, 2818, 2904, 3118
Hpy99I	CGWCG	1 cut(s)	3464
HpyCH4III	ACNGT	8 cut(s)	1561, 1763, 2086, 2117, 2195, 2780, 2975, 3136
HpyCH4IV	ACGT	2 cut(s)	1223, 1822
HpySE526I	ACGT	2 cut(s)	1223, 1822
Hsp92I	GRCGYC	1 cut(s)	1223
HspAI	GCGC	1 cut(s)	3407
Kpn2I	TCCGGA	1 cut(s)	559
KpnI	GGTACC	1 cut(s)	2273
KroI	GCCGGC	1 cut(s)	1571
KroNI	GCCGGC	1 cut(s)	1573
Ksp22I	TGATCA	1 cut(s)	3001
KspAI	GTTAAC	1 cut(s)	3118
LguI	GCTCTTC	1 cut(s)	2085
LmnI	GCTCC	9 cut(s)	193, 274, 325, 538, 691, 782, 1965, 1999, 2494
MaeI	CTAG	6 cut(s)	1034, 1230, 1308, 2759, 2921, 3480
MaeII	ACGT	2 cut(s)	1223, 1822
MaeIII	GTNAC	8 cut(s)	173, 648, 983, 2227, 2545, 2676, 2975, 3208
MbiI	CCGCTC	1 cut(s)	694
MflI	RGATCY	4 cut(s)	665, 1087, 1301, 1985
MhlI	GDGCHC	3 cut(s)	1414, 2097, 2973
MlsI	TGGCCA	2 cut(s)	2453, 3608
MluNI	TGGCCA	2 cut(s)	2453, 3608
MlyI	GAGTC	3 cut(s)	455, 1074, 1263
MmeI	TCCRAC	5 cut(s)	112, 643, 880, 986, 3591
Mox20I	TGGCCA	2 cut(s)	2453, 3608
Mph1103I	ATGCAT	4 cut(s)	814, 1512, 1516, 2739
MroI	TCCGGA	1 cut(s)	559
MroNI	GCCGGC	1 cut(s)	1571
MscI	TGGCCA	2 cut(s)	2453, 3608
MslI	CAYNNNNRTG	5 cut(s)	183, 375, 1073, 1158, 2982
Msp20I	TGGCCA	2 cut(s)	2453, 3608
MspA1I	CMGCKG	2 cut(s)	1736, 2894
MspI	CCGG	5 cut(s)	437, 560, 1572, 3447, 3576
MspR9I	CCNGG	8 cut(s)	192, 360, 519, 588, 1317, 2219, 2253, 2334
MvaI	CCWGG	8 cut(s)	192, 360, 519, 588, 1317, 2219, 2253, 2334
NaeI	GCCGGC	1 cut(s)	1573
NcoI	CCATGG	3 cut(s)	116, 178, 2238
NgoMIV	GCCGGC	1 cut(s)	1571
NlaIV	GGNNCC	4 cut(s)	872, 1412, 1788, 2271
NmuCI	GTSAC	5 cut(s)	983, 2227, 2676, 2975, 3208
NsiI	ATGCAT	4 cut(s)	814, 1512, 1516, 2739
NspI	RCATGY	3 cut(s)	111, 1157, 1514
NspV	TTCGAA	1 cut(s)	1198
OliI	CACNNNNGTG	1 cut(s)	375
PacI	TTAATTAA	1 cut(s)	3492
PaeI	GCATGC	2 cut(s)	1157, 1514
PagI	TCATGA	2 cut(s)	277, 1920
PaqCI	CACCTGC	1 cut(s)	2215
PasI	CCCWGGG	1 cut(s)	2333
PceI	AGGCCT	4 cut(s)	601, 1364, 2919, 3094
PciSI	GCTCTTC	1 cut(s)	2085
PcsI	WCGNNNNNNNCGW	1 cut(s)	3468
PdiI	GCCGGC	1 cut(s)	1573
PflFI	GACNNNGTC	1 cut(s)	2674
PflMI	CCANNNNNTGG	2 cut(s)	1562, 2524
PinAI	ACCGGT	1 cut(s)	3575
PleI	GAGTC	3 cut(s)	455, 1073, 1262
PpsI	GAGTC	3 cut(s)	455, 1073, 1262
Ppu21I	YACGTR	1 cut(s)	1823
PpuMI	RGGWCCY	1 cut(s)	2372
PsiI	TTATAA	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	2097
Psp5II	RGGWCCY	1 cut(s)	2372
Psp6I	CCWGG	8 cut(s)	190, 358, 517, 586, 1315, 2217, 2251, 2332
PspFI	CCCAGC	2 cut(s)	1019, 1024
PspGI	CCWGG	8 cut(s)	190, 358, 517, 586, 1315, 2217, 2251, 2332
PspN4I	GGNNCC	4 cut(s)	872, 1412, 1788, 2271
PspOMI	GGGCCC	1 cut(s)	1410
PspPI	GGNCC	4 cut(s)	557, 1410, 1411, 2372
PspPPI	RGGWCCY	1 cut(s)	2372
PstI	CTGCAG	3 cut(s)	2016, 2126, 3364
PstNI	CAGNNNCTG	6 cut(s)	1739, 2121, 2309, 2606, 3311, 3368
PsuI	RGATCY	4 cut(s)	665, 1087, 1301, 1985
PsyI	GACNNNGTC	1 cut(s)	2674
PvuII	CAGCTG	1 cut(s)	1736
RsaI	GTAC	4 cut(s)	14, 246, 2007, 2271
RsaNI	GTAC	4 cut(s)	13, 245, 2006, 2270
RseI	CAYNNNNRTG	5 cut(s)	183, 375, 1073, 1158, 2982
SacI	GAGCTC	1 cut(s)	2097
SapI	GCTCTTC	1 cut(s)	2085
Sau96I	GGNCC	4 cut(s)	557, 1410, 1411, 2372
SchI	GAGTC	3 cut(s)	455, 1074, 1263
ScrFI	CCNGG	8 cut(s)	192, 360, 519, 588, 1317, 2219, 2253, 2334
SduI	GDGCHC	3 cut(s)	1414, 2097, 2973
SfcI	CTRYAG	6 cut(s)	2012, 2122, 2499, 2994, 3132, 3360
SfuI	TTCGAA	1 cut(s)	1198
SinI	GGWCC	2 cut(s)	557, 2372
SmiMI	CAYNNNNRTG	5 cut(s)	183, 375, 1073, 1158, 2982
SmlI	CTYRAG	1 cut(s)	2568
SmoI	CTYRAG	1 cut(s)	2568
SphI	GCATGC	2 cut(s)	1157, 1514
SseBI	AGGCCT	4 cut(s)	601, 1364, 2919, 3094
SspMI	CTAG	6 cut(s)	1034, 1230, 1308, 2759, 2921, 3480
SstI	GAGCTC	1 cut(s)	2097
StuI	AGGCCT	4 cut(s)	601, 1364, 2919, 3094
StyD4I	CCNGG	8 cut(s)	190, 358, 517, 586, 1315, 2217, 2251, 2332
StyI	CCWWGG	6 cut(s)	116, 178, 950, 1359, 1989, 2238
TaaI	ACNGT	8 cut(s)	1561, 1763, 2086, 2117, 2195, 2780, 2975, 3136
TaiI	ACGT	2 cut(s)	1226, 1825
TaqI	TCGA	6 cut(s)	334, 447, 1198, 1257, 2265, 3030
TaqII	GACCGA	1 cut(s)	3645
TatI	WGTACW	3 cut(s)	12, 244, 2005
TseFI	GTSAC	5 cut(s)	983, 2227, 2676, 2975, 3208
Tsp45I	GTSAC	5 cut(s)	983, 2227, 2676, 2975, 3208
TspGWI	ACGGA	1 cut(s)	724
Tth111I	GACNNNGTC	1 cut(s)	2674
Van91I	CCANNNNNTGG	2 cut(s)	1562, 2524
VpaK11BI	GGWCC	2 cut(s)	557, 2372
XagI	CCTNNNNNAGG	1 cut(s)	1993
XapI	RAATTY	3 cut(s)	731, 2168, 2350
XbaI	TCTAGA	2 cut(s)	1033, 1229
XceI	RCATGY	3 cut(s)	111, 1157, 1514
XmiI	GTMKAC	1 cut(s)	112
XspI	CTAG	6 cut(s)	1034, 1230, 1308, 2759, 2921, 3480
ZraI	GACGTC	1 cut(s)	1224
Zsp2I	ATGCAT	4 cut(s)	814, 1512, 1516, 2739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.