Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000348.1

Orthogroup ID

OG0013339

Physical Location & Seq

Genomic Coordinates Reverse (-)

20580 .. 21173

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000348.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atggattcacaccccgagcaaaaaaaccagaccttctctttccctcaatatccttacccgcctcaccaaccaaacccacctatggcatttgtgccttggccttatggtggcaactttggctacccaaaccccgtgccgtgctattcttgctgtaaccatggtaatgctcctggttataatggtttcagaacctcctaccctcaaactccaatgccatcaccagtacattttgctggtggttatcctgctccatatcatgaagcctaccctgttcaatatgtctcgcctcctcattactctatggagcttcctcgatatgattatgacaagaagatgccaggaaattatcactgctgtgggtgtcctaatcacagccaccagaataagggtgtgaagattgaagaacaagaatcaccggatgttgtcgaaaagatgaatgactcattggttccgggtcagatgacaaattacccttatcctgttgtttggattccaccaggaaacatgaagggtgatgagcaaaggaaactttctggtccggagagtgcaaattcattggctattcatatgatacgatttgccctaagagcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005911 GO:0006457 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009791 GO:0009814 GO:0009817 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010035 GO:0010228 GO:0010506 GO:0010508 GO:0010941 GO:0010942 GO:0012502 GO:0019222 GO:0022414 GO:0030054 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0043067 GO:0043068 GO:0043207 GO:0044237 GO:0044248 GO:0045087 GO:0046677 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0061919 GO:0065007 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG IQ

Protein Analysis

197

Amino Acids

22.25

Weight (kDa)

6.53

Isoelectric Point (pI)

62.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46240
fragaria_vesca	FvH4_7g15690 FvH4_7g15690
malus_domestica	MD01G1073600.v1.1
prunus_persica	Prupe.2G181700_v2.0.a1
pyrus_communis	pycom01g10280
rosa_chinensis	RchiOBHm_Chr1g0358421
rosa_laevigata	RLG00000027961
rosa_multiflora	Rmu_sc0041976.1_g000002 Rmu_ssc0000348.1_g000008
rosa_roxburghii	Rroxscaffold_4G00297950
rosa_rugosa	Rorug01G0261700 Rorug01G0261800
rosa_samantha	Rh1AG275900 Rh1BG242700 Rh1CG259700 Rh1DG271100
rosa_wichuraiana	Rw1G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	177
AccIII	TCCGGA	1 cut(s)	538
AciI	CCGC	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	550
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	3 cut(s)	82, 107, 385
AgsI	TTSAA	2 cut(s)	275, 401
AjnI	CCWGG	3 cut(s)	169, 337, 496
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
AleI	CACNNNNGTG	1 cut(s)	354
AluBI	AGCT	1 cut(s)	307
AluI	AGCT	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	286
Ama87I	CYCGRG	1 cut(s)	14
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	550
AspS9I	GGNCC	1 cut(s)	536
AsuC2I	CCSGG	1 cut(s)	453
AsuHPI	GGTGA	4 cut(s)	56, 210, 405, 524
AvaI	CYCGRG	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	536
BccI	CCATC	1 cut(s)	223
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	3 cut(s)	171, 339, 498
BcnI	CCSGG	1 cut(s)	453
BcoDI	GTCTC	1 cut(s)	286
Bme1390I	CCNGG	4 cut(s)	171, 339, 453, 498
Bme18I	GGWCC	1 cut(s)	536
BmeT110I	CYCGRG	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	536
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	4 cut(s)	171, 339, 453, 498
BmsI	GCATC	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	453
BsaJI	CCNNGG	2 cut(s)	95, 157
BsaWI	WCCGGW	2 cut(s)	415, 538
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 107, 385
Bse1I	ACTGG	1 cut(s)	221
BseAI	TCCGGA	1 cut(s)	538
BseBI	CCWGG	3 cut(s)	171, 339, 498
BseDI	CCNNGG	2 cut(s)	95, 157
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	3 cut(s)	82, 107, 385
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	14
BsiSI	CCGG	3 cut(s)	416, 452, 539
BslI	CCNNNNNNNGG	3 cut(s)	82, 107, 385
BsmAI	GTCTC	1 cut(s)	286
BsnI	GGCC	1 cut(s)	100
BsoBI	CYCGRG	1 cut(s)	14
Bsp13I	TCCGGA	1 cut(s)	538
Bsp19I	CCATGG	1 cut(s)	157
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	100
BspEI	TCCGGA	1 cut(s)	538
BspHI	TCATGA	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	450
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	2 cut(s)	95, 157
BssT1I	CCWWGG	2 cut(s)	95, 157
Bst2UI	CCWGG	3 cut(s)	171, 339, 498
BstDEI	CTNAG	1 cut(s)	584
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	424
BstMAI	GTCTC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 147, 587
BstNI	CCWGG	3 cut(s)	171, 339, 498
BstSCI	CCNGG	4 cut(s)	169, 337, 451, 496
BsuRI	GGCC	1 cut(s)	100
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	424
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	1 cut(s)	349
CciI	TCATGA	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	536
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	3 cut(s)	158, 257, 505
CviJI	RGCY	6 cut(s)	100, 120, 263, 307, 375, 560
CviKI_1	RGCY	6 cut(s)	100, 120, 263, 307, 375, 560
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	1 cut(s)	584
Eco130I	CCWWGG	2 cut(s)	95, 157
Eco47I	GGWCC	1 cut(s)	536
Eco88I	CYCGRG	1 cut(s)	14
EcoRII	CCWGG	3 cut(s)	169, 337, 496
EcoT14I	CCWWGG	2 cut(s)	95, 157
ErhI	CCWWGG	2 cut(s)	95, 157
FaeI	CATG	3 cut(s)	161, 260, 508
FatI	CATG	3 cut(s)	157, 256, 504
FauI	CCCGC	1 cut(s)	66
FauNDI	CATATG	1 cut(s)	567
FokI	GGATG	1 cut(s)	431
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	3 cut(s)	416, 452, 539
Hin1II	CATG	3 cut(s)	161, 260, 508
HinfI	GANTC	4 cut(s)	5, 410, 440, 490
HpaII	CCGG	3 cut(s)	416, 452, 539
HphI	GGTGA	4 cut(s)	56, 210, 405, 524
Hpy188I	TCNGA	2 cut(s)	188, 459
Hpy188III	TCNNGA	2 cut(s)	257, 539
HpyAV	CCTTC	2 cut(s)	43, 502
HpyCH4V	TGCA	1 cut(s)	548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 147, 587
HpyF3I	CTNAG	1 cut(s)	584
Hsp92II	CATG	3 cut(s)	161, 260, 508
Kpn2I	TCCGGA	1 cut(s)	538
LmnI	GCTCC	3 cut(s)	172, 253, 304
LweI	GCATC	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	152
MboII	GAAGA	3 cut(s)	343, 406, 413
MluCI	AATT	3 cut(s)	343, 466, 550
MlyI	GAGTC	1 cut(s)	434
MnlI	CCTC	7 cut(s)	54, 72, 202, 210, 297, 300, 321
MroI	TCCGGA	1 cut(s)	538
MslI	CAYNNNNRTG	2 cut(s)	162, 354
MspI	CCGG	3 cut(s)	416, 452, 539
MspR9I	CCNGG	4 cut(s)	171, 339, 453, 498
MvaI	CCWGG	3 cut(s)	171, 339, 498
MwoI	GCNNNNNNNGC	3 cut(s)	117, 147, 587
NciI	CCSGG	1 cut(s)	453
NcoI	CCATGG	1 cut(s)	157
NdeI	CATATG	1 cut(s)	567
NlaIII	CATG	3 cut(s)	161, 260, 508
NlaIV	GGNNCC	1 cut(s)	450
OliI	CACNNNNGTG	1 cut(s)	354
PagI	TCATGA	1 cut(s)	256
PfeI	GAWTC	3 cut(s)	5, 410, 490
PleI	GAGTC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	434
PsiI	TTATAA	1 cut(s)	177
Psp6I	CCWGG	3 cut(s)	169, 337, 496
PspGI	CCWGG	3 cut(s)	169, 337, 496
PspN4I	GGNNCC	1 cut(s)	450
PspPI	GGNCC	1 cut(s)	536
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
RseI	CAYNNNNRTG	2 cut(s)	162, 354
Sau96I	GGNCC	1 cut(s)	536
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	4 cut(s)	171, 339, 453, 498
SetI	ASST	4 cut(s)	35, 82, 194, 309
SfaNI	GCATC	1 cut(s)	324
SinI	GGWCC	1 cut(s)	536
SmiMI	CAYNNNNRTG	2 cut(s)	162, 354
Sse9I	AATT	3 cut(s)	343, 466, 550
SsiI	CCGC	1 cut(s)	59
StyD4I	CCNGG	4 cut(s)	169, 337, 451, 496
StyI	CCWWGG	2 cut(s)	95, 157
TaqI	TCGA	2 cut(s)	313, 426
TasI	AATT	3 cut(s)	343, 466, 550
TatI	WGTACW	1 cut(s)	223
TfiI	GAWTC	3 cut(s)	5, 410, 490
TscAI	CASTG	1 cut(s)	356
TspDTI	ATGAA	5 cut(s)	273, 449, 521, 543, 554
TspRI	CASTG	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	536
XapI	RAATTY	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.