Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0013339

Physical Location & Seq

Genomic Coordinates Forward (+)

36958036 .. 36962012

Gene Structure 3977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG242700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3651 bp

ATGATGCCGATGTACAGATACATGGATTCACACCCCGAGCAAAAAAACCAGACCTTCTCTTTCCCTCAATATCCTTACCCGCCTCACCAACCAAACCCACCTATGGCATTTGTGCCTTGGCCTTATGGTGGCAACTTTGGCTACCCAAACCCCGTGCCGTGCTATTCTTGCTGTAACCATGGTAATGCTCCTGGTTATAATGGTTTCAGACCCTCCTACCCTCATACTCCAATGCCATCACCAATACATTTTGCTGGTGGTTATCCTGCTCCGTATCATGAAGCCTACCCTGTTCAATATGTCCGGCCTCCTCATTACTCTATGGAGCTTCCTCGATATGATTATGACAAGAAGATGCCAGGAAATTACCACTGCTGTGGGTGTCCTAATCACAGCCACCAGAATAAGGGTGTGAAGATTGAAGAACAAGAATCACCGGATGTTGTCGAAAAGGTGAATGACTCAGTGGTTCCGGGTCAGATGACAAATTACCCTTATCCTGTTGTTTGGATTCCACCAGGAAACATGAAGGGTGAGGAGCAAAGGAAACTTTCTGGTCCAGAGATTGTAGAGCAAAAGATGCATCCAGATGATCATGAAAGGCCTCCTGTGAGTTTGAAATCTCAGGAAGGAGATCAAAGGCGTGGTTTGTTACCTTTTGACATGGCCAATATTGGATCTTTGATGCAAGGTGGAAATGGGGAGCGGGTTCAGGATCAACGGAGTGAGGACAGAAAAAAGGAATTTCCATTTCCAATTTTTTGGATGCCCTCTTATGATGATACTAAGCGTGATGGAGCTGGAAAGAAGGACAAGGACATGGATGCATCTCAGGATCAGCAGACTGAAGAACGAATGAGGCAACTCCCATTCCCATTCTTCTGGCTCCCTCTTGAAAATAAACAGAAGGATGTTGGCATGAGGGAGGAGGAGAATGAGGAAAGTAGGAAGGTTGATGCTAATGCAAGGATTGTTCCGACGAAGCACACTGAGAGTAGTGACAATGGGACTGGAGTTAACGAAGATAAATCTGCTGGGCTGGGTGTTCTAGACAGAAAGGGAAAAGATGCTAATCAGAGAGTCATACCAGTGAAGCAAATGGAGGATCTACCTAAAAAGGAGGACAATTCTGAAGATGCTAAGAGAAGAGGAAGAGAAGTCCCTGTGAAGCATGTGGATGACAATTTAGCTAACAAACCTTCTGGTAGCAGTGTTCGAAGCCAGTCATCATCCCCGAAGAAATCATCTAAGCTACCTCCTGTTTGTCTGAGAGTCGATCCTTTGCCAAGTACGAAGAAGAAAGGCAGTGGTAGTTCCAGATCTCCTAGTCCTCCTGGTCATAAAAAAGTTCAAAAAGAGACGTCAGCAGACACTTCCAAGGCCTCTGCTTCGTTTAGCTTGCCAGAGGACTCGCAACAAAATATGAAGCCCCACAATTCAAGCAATGGAAATGAGGTAGAACCATTCAAGAAAGGGAAGGTTATTGATGTTATGGATAAGGGAATCGGCGAAAACAATGATTCAATGCATGCATCTCAGATTCCTGTTAATTCCAAAGAGGTTTCCTCAAAGCCAACTGTTGGGGAAGCCGGCAAAGATGGGAATCAATGTGAGGTCAATGAGGATCAAGGCACAGGAAAGATAGGAGAAACAACAGCTCAGAATGTGGAAGAGATGAAGAAAACTTCGGGGTCAGCTAAATCAGTTGCTGAGGGAAGTAATTTTGAGAGGAAGAGGTTATCAGATGTAGCAGCTGCTGTGCTTATTCAATCTGGCTACCGTGGATTCATGGTTAGGAGGTGGGAACCATTGAAGAAATTGAAGCAACTAGCTGAGATACGTGAGCAAGTGGCTGATATTCGGAATCAAATCATATCTTTGGAGACCTCTGATCTCAACAAAGATGATAAACAAAGAGTGGTCATCGGGGAAACCATCATGAGACTTCTTCTAAGACTGGATACCATTCAGGGTTTGCTCCCAAGTCTCAGAGACATAAGAAGATCCTTGGCAAGGGAGCTTGTACTCCTGCAGGAAAAGCTTGATGATATAATGTCCAAGAAATCCCAAGACACAACGCAAGAGGTGTCTGCTGTTAAAACTGTGGAAGAGCTCAATGCCAATGGCAACAACAGTGTCTGCATGTCAGAGCAACAAGTAGAGGAAGCAGCAAAAGTTGGGGAAGAATTTCCTGCTGGTGTCAGCGATAACAGTCATGTTGACACAGAGACTTGCCAGGGGCAGGCGACTCACATCACGGATTCTCTCCCTGGTGTGGATGTCGAGGTACCAGAACGCTCTGAACATAAAGAGCTGGACACAGCATCTGAGAAAGGACTGCACGAACTTCCTGGGGATAGTGATCTGAATTCTAAAGATCTTGATTCAGGATCTCCAATGGAATCGAATGATAAAGTCGCTGATGAAGAGCTTAGTGCTGGACAGGCAGTGGTGGTGGATGCGGAAATGGCCAATGGTGCTACTCAGCCTGAGCAATGTGGTCAAGCTCCATCTCCTGTAGAAGACAAATCAGACCATAGTGTGGTTTCAACCGCTTCAGAAGTTATAATAGGTCCAGAGTTGCCTCAAATAGCAGTTAAAAATGAGCCTGCTGCTTCAGAGCCTGAAAATGTTGAAGCATCAGAAATGAGCAAGGATGAATTGAAACAAGGTGGAGAAGTGGGATTGATCATGTCACCTGATATAACTTCTCCAGTAGCCATTGATGATGGTCATGATGCGACTGACAAAGAAGTAGAGATGCATGAGCTTGCACCATTGCAACTAGGCACAACTGATGAAGACAGTGGTGCGGTTTCTGAATTGAAGAAGAATGAAGAAGTTCACATAGTGAAGGAAAACGATGTCTCAAAAAGTGGGGATGAAGAAATAGGGGCTCTGCAACAAGAGGAGGGAACAATCGAGAAGTTGATAAAGGTGGGAGGCCAAGTTGATGAGGAACACACAGGCGATACATTACTTGATCCAGAGGTCGGGCACCATCACCAAAACGAAGCTGGTATGGATGTTCCACTGCCAGCAGTGTCTCAAACTGTAGAATCCCAACCATTGAGCTTACCTGTTGATGAGACAAGCACTCAAGATGTGGTGCATGAAAATGGGCCTGCAGACCTGACTGATGGTGGTGACACTTGCTTATCTACATTGGTTGATGCTGACACGCCCAATGAGGATGAAGCTGAGAAAAATAGAGAAGACTATAAAGACCTGCAAGCAGTGACCATAGAAGACGATACAGATATAATAGAGAACAAAGCTGAAAGTGAAGACAGCAAAGAGGATGTCCTCACTGAGAAAAGTGAGCCATTGCCTGCAGATGCTGAAACTGCCAAAGAGGATGTCCTTACTGAGAAGAGTGAACCATTGCCTGCATCACCAATCGCAACCGAGGTTTCCTCCGGTGATCGAAGCGTCGTGGGAGACGAAGGTGCTAGGAAGCTAATCGAAGAGAATGAGAAGCTAAGGGAAACGATGCAGAAGTTGATGGTAGCAGGAAAAGACCAATTACAAGTGATATCCAACCTCACCGGTAGAGTGAAAGATTTGGAGAAAAAGTTGGCCAAGAAGAAGAAATTAAGGACAAAAAGGTGTAGGGCTGCATCATCTCGGTCTTCGTGTGTCAAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005911 GO:0006457 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009791 GO:0009814 GO:0009817 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010035 GO:0010228 GO:0010506 GO:0010508 GO:0010941 GO:0010942 GO:0012502 GO:0019222 GO:0022414 GO:0030054 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0043067 GO:0043068 GO:0043207 GO:0044237 GO:0044248 GO:0045087 GO:0046677 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0061919 GO:0065007 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG IQ

Protein Analysis

1216

Amino Acids

133.74

Weight (kDa)

4.89

Isoelectric Point (pI)

57.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	611 - 683	1.7e-08	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46240
fragaria_vesca	FvH4_7g15690 FvH4_7g15690
malus_domestica	MD01G1073600.v1.1
prunus_persica	Prupe.2G181700_v2.0.a1
pyrus_communis	pycom01g10280
rosa_chinensis	RchiOBHm_Chr1g0358421
rosa_laevigata	RLG00000027961
rosa_multiflora	Rmu_sc0041976.1_g000002 Rmu_ssc0000348.1_g000008
rosa_roxburghii	Rroxscaffold_4G00297950
rosa_rugosa	Rorug01G0261700 Rorug01G0261800
rosa_samantha	Rh1AG275900 Rh1BG242700 Rh1CG259700 Rh1DG271100
rosa_wichuraiana	Rw1G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	198, 2567
AatII	GACGTC	1 cut(s)	1364
Acc36I	ACCTGC	1 cut(s)	3237
Acc65I	GGTACC	1 cut(s)	2287
AccB1I	GGYRCC	2 cut(s)	2287, 2997
AccB7I	CCANNNNNTGG	2 cut(s)	1580, 2542
AccBSI	CCGCTC	1 cut(s)	706
AciI	CCGC	5 cut(s)	80, 706, 2462, 2553, 2813
AclWI	GGATC	9 cut(s)	685, 723, 843, 1113, 1271, 1632, 1998, 2398, 2978
AcoI	YGGCCR	3 cut(s)	666, 2469, 3579
AcsI	RAATTY	3 cut(s)	743, 2186, 2368
AcuI	CTGAAG	4 cut(s)	867, 1152, 2541, 2601
AcyI	GRCGYC	1 cut(s)	1361
AdeI	CACNNNGTG	1 cut(s)	2851
AfaI	GTAC	4 cut(s)	14, 1291, 2025, 2289
AfiI	CCNNNNNNNGG	9 cut(s)	103, 128, 406, 1580, 2013, 2242, 2275, 2542, 2993
AgeI	ACCGGT	1 cut(s)	3548
AjnI	CCWGG	7 cut(s)	190, 358, 517, 1333, 2235, 2269, 2350
AleI	CACNNNNGTG	1 cut(s)	375
Alw21I	GWGCWC	1 cut(s)	2115
AlwI	GGATC	9 cut(s)	685, 723, 843, 1113, 1271, 1632, 1998, 2398, 2978
AlwNI	CAGNNNCTG	6 cut(s)	1709, 1757, 2139, 2327, 2624, 3341
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	9 cut(s)	119, 305, 602, 666, 1380, 2469, 2944, 3122, 3579
ApeKI	GCWGC	5 cut(s)	1751, 1754, 2168, 2612, 3617
ApoI	RAATTY	3 cut(s)	743, 2186, 2368
ArsI	GACNNNNNNTTYG	4 cut(s)	3288, 3320, 3345, 3377
AsiGI	ACCGGT	1 cut(s)	3548
Asp700I	GAANNNNTTC	2 cut(s)	2187, 2841
Asp718I	GGTACC	1 cut(s)	2287
AspS9I	GGNCC	3 cut(s)	557, 2573, 3122
AsuC2I	CCSGG	1 cut(s)	474
AsuII	TTCGAA	1 cut(s)	1216
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	2 cut(s)	557, 2573
BaeGI	GKGCMC	1 cut(s)	3000
BalI	TGGCCA	3 cut(s)	668, 2471, 3581
BanI	GGYRCC	2 cut(s)	2287, 2997
BanII	GRGCYC	2 cut(s)	2115, 2899
BbsI	GAAGAC	6 cut(s)	2529, 2808, 3222, 3255, 3294, 3624
Bbv12I	GWGCWC	1 cut(s)	2115
BbvCI	CCTCAGC	1 cut(s)	1710
BbvI	GCAGC	5 cut(s)	1741, 1763, 2180, 2599, 3604
BccI	CCATC	9 cut(s)	244, 788, 1592, 1943, 2518, 2723, 3009, 3134, 3499
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	7 cut(s)	192, 360, 519, 1335, 2237, 2271, 2352
BciVI	GTATCC	1 cut(s)	1954
BclI	TGATCA	2 cut(s)	592, 2688
BcnI	CCSGG	1 cut(s)	474
BfaI	CTAG	5 cut(s)	1049, 1326, 1829, 2786, 3453
BfmI	CTRYAG	5 cut(s)	2030, 2517, 3054, 3126, 3333
BfuAI	ACCTGC	1 cut(s)	3237
BfuI	GTATCC	1 cut(s)	1954
BglII	AGATCT	2 cut(s)	1319, 2377
BisI	GCNGC	5 cut(s)	1752, 1755, 2169, 2613, 3618
BlsI	GCNGC	5 cut(s)	1753, 1756, 2170, 2614, 3619
Bme1390I	CCNGG	8 cut(s)	192, 360, 474, 519, 1335, 2237, 2271, 2352
Bme18I	GGWCC	2 cut(s)	557, 2573
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	3 cut(s)	557, 2573, 3122
BmiI	GGNNCC	5 cut(s)	471, 887, 1806, 2289, 2999
BmrFI	CCNGG	8 cut(s)	192, 360, 474, 519, 1335, 2237, 2271, 2352
BpiI	GAAGAC	6 cut(s)	2529, 2808, 3222, 3255, 3294, 3624
BplI	GAGNNNNNCTC	4 cut(s)	1550, 1582, 3401, 3433
BpmI	CTGGAG	2 cut(s)	1032, 2697
Bpu10I	CCTNAGC	3 cut(s)	1710, 2490, 3482
Bpu14I	TTCGAA	1 cut(s)	1216
BpuEI	CTTGAG	1 cut(s)	3084
BpuMI	CCSGG	1 cut(s)	474
BsaAI	YACGTR	1 cut(s)	1841
BsaBI	GATNNNNATC	3 cut(s)	1071, 1602, 2361
BsaHI	GRCGYC	1 cut(s)	1361
BsaI	GGTCTC	1 cut(s)	1877
BsaJI	CCNNGG	9 cut(s)	116, 178, 1377, 1780, 2007, 2236, 2269, 2351, 3408
BsaWI	WCCGGW	3 cut(s)	436, 3419, 3548
BsaXI	ACNNNNNCTCC	4 cut(s)	2934, 2964, 3560, 3590
Bsc4I	CCNNNNNNNGG	9 cut(s)	103, 128, 406, 1580, 2013, 2242, 2275, 2542, 2993
Bse118I	RCCGGY	2 cut(s)	1589, 3548
Bse1I	ACTGG	5 cut(s)	1015, 1088, 1222, 1962, 2714
Bse3DI	GCAATG	5 cut(s)	1450, 2501, 2777, 3326, 3383
Bse8I	GATNNNNATC	3 cut(s)	1071, 1602, 2361
BseBI	CCWGG	7 cut(s)	192, 360, 519, 1335, 2237, 2271, 2352
BseDI	CCNNGG	9 cut(s)	116, 178, 1377, 1780, 2007, 2236, 2269, 2351, 3408
BseJI	GATNNNNATC	3 cut(s)	1071, 1602, 2361
BseLI	CCNNNNNNNGG	9 cut(s)	103, 128, 406, 1580, 2013, 2242, 2275, 2542, 2993
BseMI	GCAATG	5 cut(s)	1450, 2501, 2777, 3326, 3383
BseNI	ACTGG	5 cut(s)	1015, 1088, 1222, 1962, 2714
BseRI	GAGGAG	5 cut(s)	300, 551, 941, 944, 2924
BseSI	GKGCMC	1 cut(s)	3000
BseXI	GCAGC	5 cut(s)	1741, 1763, 2180, 2599, 3604
BseYI	CCCAGC	2 cut(s)	1034, 1039
BsgI	GTGCAG	1 cut(s)	2324
BshFI	GGCC	9 cut(s)	121, 307, 604, 668, 1382, 2471, 2946, 3124, 3581
BshNI	GGYRCC	2 cut(s)	2287, 2997
BshTI	ACCGGT	1 cut(s)	3548
BsiHKAI	GWGCWC	1 cut(s)	2115
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	6 cut(s)	304, 437, 473, 1590, 3420, 3549
BslFI	GGGAC	2 cut(s)	1021, 1145
BslI	CCNNNNNNNGG	9 cut(s)	103, 128, 406, 1580, 2013, 2242, 2275, 2542, 2993
BsmBI	CGTCTC	2 cut(s)	1352, 3435
BsmFI	GGGAC	2 cut(s)	1021, 1145
BsnI	GGCC	9 cut(s)	121, 307, 604, 668, 1382, 2471, 2946, 3124, 3581
Bso31I	GGTCTC	1 cut(s)	1877
BsoBI	CYCGRG	1 cut(s)	35
Bsp119I	TTCGAA	1 cut(s)	1216
Bsp1286I	GDGCHC	3 cut(s)	2115, 2899, 3000
Bsp1407I	TGTACA	1 cut(s)	12
Bsp19I	CCATGG	1 cut(s)	178
BspACI	CCGC	5 cut(s)	80, 706, 2462, 2553, 2813
BspANI	GGCC	9 cut(s)	121, 307, 604, 668, 1382, 2471, 2946, 3124, 3581
BspHI	TCATGA	4 cut(s)	277, 595, 1938, 2734
BspLI	GGNNCC	5 cut(s)	471, 887, 1806, 2289, 2999
BspMAI	CTGCAG	3 cut(s)	2034, 3130, 3337
BspMI	ACCTGC	1 cut(s)	3237
BspPI	GGATC	9 cut(s)	685, 723, 843, 1113, 1271, 1632, 1998, 2398, 2978
BspQI	GCTCTTC	2 cut(s)	2103, 2421
BspT104I	TTCGAA	1 cut(s)	1216
BspT107I	GGYRCC	2 cut(s)	2287, 2997
BspTNI	GGTCTC	1 cut(s)	1877
BsrBI	CCGCTC	1 cut(s)	706
BsrDI	GCAATG	5 cut(s)	1450, 2501, 2777, 3326, 3383
BsrFI	RCCGGY	2 cut(s)	1589, 3548
BsrGI	TGTACA	1 cut(s)	12
BsrI	ACTGG	5 cut(s)	1015, 1088, 1222, 1962, 2714
BssAI	RCCGGY	2 cut(s)	1589, 3548
BssECI	CCNNGG	9 cut(s)	116, 178, 1377, 1780, 2007, 2236, 2269, 2351, 3408
BssNI	GRCGYC	1 cut(s)	1361
BssT1I	CCWWGG	4 cut(s)	116, 178, 1377, 2007
Bst2UI	CCWGG	7 cut(s)	192, 360, 519, 1335, 2237, 2271, 2352
Bst4CI	ACNGT	7 cut(s)	1579, 1781, 2104, 2135, 2213, 2807, 3055
Bst6I	CTCTTC	8 cut(s)	1141, 1147, 1665, 1727, 2103, 2421, 3368, 3462
BstACI	GRCGYC	1 cut(s)	1361
BstAPI	GCANNNNNTGC	1 cut(s)	580
BstAUI	TGTACA	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	1841
BstBI	TTCGAA	1 cut(s)	1216
BstDSI	CCRYGG	2 cut(s)	178, 1780
BstENI	CCTNNNNNAGG	1 cut(s)	2011
BstMWI	GCNNNNNNNGC	8 cut(s)	138, 168, 580, 2038, 2444, 2468, 2477, 3347
BstNI	CCWGG	7 cut(s)	192, 360, 519, 1335, 2237, 2271, 2352
BstNSI	RCATGY	3 cut(s)	1175, 1532, 2146
BstSCI	CCNGG	8 cut(s)	190, 358, 472, 517, 1333, 2235, 2269, 2350
BstSFI	CTRYAG	5 cut(s)	2030, 2517, 3054, 3126, 3333
BstSLI	GKGCMC	1 cut(s)	3000
BstV1I	GCAGC	5 cut(s)	1741, 1763, 2180, 2599, 3604
BstV2I	GAAGAC	6 cut(s)	2529, 2808, 3222, 3255, 3294, 3624
BstX2I	RGATCY	6 cut(s)	677, 1105, 1319, 2003, 2377, 2390
BstXI	CCANNNNNNTGG	3 cut(s)	377, 762, 882
BstYI	RGATCY	6 cut(s)	677, 1105, 1319, 2003, 2377, 2390
BsuI	GTATCC	1 cut(s)	1954
BsuRI	GGCC	9 cut(s)	121, 307, 604, 668, 1382, 2471, 2946, 3124, 3581
BtgI	CCRYGG	2 cut(s)	178, 1780
BtsI	GCAGTG	7 cut(s)	370, 1216, 1312, 2454, 3032, 3048, 3243
BveI	ACCTGC	1 cut(s)	3237
CaiI	CAGNNNCTG	6 cut(s)	1709, 1757, 2139, 2327, 2624, 3341
CciI	TCATGA	4 cut(s)	277, 595, 1938, 2734
Cfr10I	RCCGGY	2 cut(s)	1589, 3548
Cfr13I	GGNCC	3 cut(s)	557, 2573, 3122
CseI	GACGC	1 cut(s)	3421
Csp6I	GTAC	4 cut(s)	13, 1290, 2024, 2288
CspAI	ACCGGT	1 cut(s)	3548
CviQI	GTAC	4 cut(s)	13, 1290, 2024, 2288
DraIII	CACNNNGTG	1 cut(s)	2851
EaeI	YGGCCR	3 cut(s)	666, 2469, 3579
Eam1104I	CTCTTC	8 cut(s)	1141, 1147, 1665, 1727, 2103, 2421, 3368, 3462
EarI	CTCTTC	8 cut(s)	1141, 1147, 1665, 1727, 2103, 2421, 3368, 3462
Ecl136II	GAGCTC	1 cut(s)	2113
Eco130I	CCWWGG	4 cut(s)	116, 178, 1377, 2007
Eco147I	AGGCCT	2 cut(s)	604, 1382
Eco24I	GRGCYC	2 cut(s)	2115, 2899
Eco31I	GGTCTC	1 cut(s)	1877
Eco32I	GATATC	1 cut(s)	3537
Eco47I	GGWCC	2 cut(s)	557, 2573
Eco53kI	GAGCTC	1 cut(s)	2113
Eco57I	CTGAAG	4 cut(s)	867, 1152, 2541, 2601
Eco88I	CYCGRG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	2113
EcoNI	CCTNNNNNAGG	1 cut(s)	2011
EcoRI	GAATTC	1 cut(s)	2368
EcoRII	CCWGG	7 cut(s)	190, 358, 517, 1333, 2235, 2269, 2350
EcoRV	GATATC	1 cut(s)	3537
EcoT14I	CCWWGG	4 cut(s)	116, 178, 1377, 2007
EcoT22I	ATGCAT	5 cut(s)	585, 829, 1530, 1534, 2766
EcoT38I	GRGCYC	2 cut(s)	2115, 2899
ErhI	CCWWGG	4 cut(s)	116, 178, 1377, 2007
Esp3I	CGTCTC	2 cut(s)	1352, 3435
FaqI	GGGAC	2 cut(s)	1021, 1145
FauI	CCCGC	2 cut(s)	87, 699
FbaI	TGATCA	2 cut(s)	592, 2688
Fnu4HI	GCNGC	5 cut(s)	1752, 1755, 2169, 2613, 3618
FriOI	GRGCYC	2 cut(s)	2115, 2899
Fsp4HI	GCNGC	5 cut(s)	1752, 1755, 2169, 2613, 3618
FspBI	CTAG	5 cut(s)	1049, 1326, 1829, 2786, 3453
GluI	GCNGC	5 cut(s)	1752, 1755, 2169, 2613, 3618
GsaI	CCCAGC	2 cut(s)	1038, 1043
GsuI	CTGGAG	2 cut(s)	1032, 2697
HaeIII	GGCC	9 cut(s)	121, 307, 604, 668, 1382, 2471, 2946, 3124, 3581
HapII	CCGG	6 cut(s)	304, 437, 473, 1590, 3420, 3549
HgaI	GACGC	1 cut(s)	3421
Hin1I	GRCGYC	1 cut(s)	1361
HincII	GTYRAC	2 cut(s)	1018, 2221
HindII	GTYRAC	2 cut(s)	1018, 2221
HindIII	AAGCTT	1 cut(s)	2039
HpaI	GTTAAC	1 cut(s)	1018
HpaII	CCGG	6 cut(s)	304, 437, 473, 1590, 3420, 3549
Hpy166II	GTNNAC	4 cut(s)	1018, 2221, 2845, 3380
Hpy8I	GTNNAC	4 cut(s)	1018, 2221, 2845, 3380
Hpy99I	CGWCG	2 cut(s)	982, 3437
HpyCH4III	ACNGT	7 cut(s)	1579, 1781, 2104, 2135, 2213, 2807, 3055
HpyCH4IV	ACGT	2 cut(s)	1361, 1840
HpyF10VI	GCNNNNNNNGC	8 cut(s)	138, 168, 580, 2038, 2444, 2468, 2477, 3347
HpySE526I	ACGT	2 cut(s)	1361, 1840
Hsp92I	GRCGYC	1 cut(s)	1361
KpnI	GGTACC	1 cut(s)	2291
KroI	GCCGGC	1 cut(s)	1589
KroNI	GCCGGC	1 cut(s)	1591
Ksp22I	TGATCA	2 cut(s)	592, 2688
KspAI	GTTAAC	1 cut(s)	1018
LguI	GCTCTTC	2 cut(s)	2103, 2421
Lsp1109I	GCAGC	5 cut(s)	1741, 1763, 2180, 2599, 3604
MaeI	CTAG	5 cut(s)	1049, 1326, 1829, 2786, 3453
MaeII	ACGT	2 cut(s)	1361, 1840
MaeIII	GTNAC	6 cut(s)	173, 651, 998, 2694, 3146, 3238
MbiI	CCGCTC	1 cut(s)	706
MflI	RGATCY	6 cut(s)	677, 1105, 1319, 2003, 2377, 2390
MhlI	GDGCHC	3 cut(s)	2115, 2899, 3000
MlsI	TGGCCA	3 cut(s)	668, 2471, 3581
MluNI	TGGCCA	3 cut(s)	668, 2471, 3581
MlyI	GAGTC	5 cut(s)	455, 1089, 1281, 1403, 2242
MmeI	TCCRAC	2 cut(s)	1001, 3564
Mox20I	TGGCCA	3 cut(s)	668, 2471, 3581
Mph1103I	ATGCAT	5 cut(s)	585, 829, 1530, 1534, 2766
MroNI	GCCGGC	1 cut(s)	1589
MroXI	GAANNNNTTC	2 cut(s)	2187, 2841
MscI	TGGCCA	3 cut(s)	668, 2471, 3581
MseI	TTAA	5 cut(s)	1017, 1548, 2097, 2598, 3596
MslI	CAYNNNNRTG	6 cut(s)	183, 375, 588, 1088, 1176, 3117
Msp20I	TGGCCA	3 cut(s)	668, 2471, 3581
MspA1I	CMGCKG	1 cut(s)	1754
MspI	CCGG	6 cut(s)	304, 437, 473, 1590, 3420, 3549
MspR9I	CCNGG	8 cut(s)	192, 360, 474, 519, 1335, 2237, 2271, 2352
MvaI	CCWGG	7 cut(s)	192, 360, 519, 1335, 2237, 2271, 2352
MwoI	GCNNNNNNNGC	8 cut(s)	138, 168, 580, 2038, 2444, 2468, 2477, 3347
NaeI	GCCGGC	1 cut(s)	1591
NciI	CCSGG	1 cut(s)	474
NcoI	CCATGG	1 cut(s)	178
NgoMIV	GCCGGC	1 cut(s)	1589
NlaIV	GGNNCC	5 cut(s)	471, 887, 1806, 2289, 2999
NmuCI	GTSAC	4 cut(s)	998, 2694, 3146, 3238
NsiI	ATGCAT	5 cut(s)	585, 829, 1530, 1534, 2766
NspI	RCATGY	3 cut(s)	1175, 1532, 2146
NspV	TTCGAA	1 cut(s)	1216
OliI	CACNNNNGTG	1 cut(s)	375
PaeI	GCATGC	1 cut(s)	1532
PagI	TCATGA	4 cut(s)	277, 595, 1938, 2734
PceI	AGGCCT	2 cut(s)	604, 1382
PciSI	GCTCTTC	2 cut(s)	2103, 2421
PcsI	WCGNNNNNNNCGW	1 cut(s)	3441
PdiI	GCCGGC	1 cut(s)	1591
PdmI	GAANNNNTTC	2 cut(s)	2187, 2841
PflMI	CCANNNNNTGG	2 cut(s)	1580, 2542
PinAI	ACCGGT	1 cut(s)	3548
PkrI	GCNGC	5 cut(s)	1753, 1756, 2170, 2614, 3619
PleI	GAGTC	5 cut(s)	455, 1088, 1280, 1403, 2242
PpsI	GAGTC	5 cut(s)	455, 1088, 1280, 1403, 2242
Ppu21I	YACGTR	1 cut(s)	1841
PsiI	TTATAA	2 cut(s)	198, 2567
Psp124BI	GAGCTC	1 cut(s)	2115
Psp6I	CCWGG	7 cut(s)	190, 358, 517, 1333, 2235, 2269, 2350
PspFI	CCCAGC	2 cut(s)	1034, 1039
PspGI	CCWGG	7 cut(s)	190, 358, 517, 1333, 2235, 2269, 2350
PspN4I	GGNNCC	5 cut(s)	471, 887, 1806, 2289, 2999
PspPI	GGNCC	3 cut(s)	557, 2573, 3122
PstI	CTGCAG	3 cut(s)	2034, 3130, 3337
PstNI	CAGNNNCTG	6 cut(s)	1709, 1757, 2139, 2327, 2624, 3341
PsuI	RGATCY	6 cut(s)	677, 1105, 1319, 2003, 2377, 2390
PvuII	CAGCTG	1 cut(s)	1754
RsaI	GTAC	4 cut(s)	14, 1291, 2025, 2289
RsaNI	GTAC	4 cut(s)	13, 1290, 2024, 2288
RseI	CAYNNNNRTG	6 cut(s)	183, 375, 588, 1088, 1176, 3117
SacI	GAGCTC	1 cut(s)	2115
SapI	GCTCTTC	2 cut(s)	2103, 2421
SaqAI	TTAA	5 cut(s)	1017, 1548, 2097, 2598, 3596
SatI	GCNGC	5 cut(s)	1752, 1755, 2169, 2613, 3618
Sau96I	GGNCC	3 cut(s)	557, 2573, 3122
SbfI	CCTGCAGG	1 cut(s)	2034
SchI	GAGTC	5 cut(s)	455, 1089, 1281, 1403, 2242
ScrFI	CCNGG	8 cut(s)	192, 360, 474, 519, 1335, 2237, 2271, 2352
SdaI	CCTGCAGG	1 cut(s)	2034
SduI	GDGCHC	3 cut(s)	2115, 2899, 3000
SfcI	CTRYAG	5 cut(s)	2030, 2517, 3054, 3126, 3333
SfuI	TTCGAA	1 cut(s)	1216
SinI	GGWCC	2 cut(s)	557, 2573
SmiMI	CAYNNNNRTG	6 cut(s)	183, 375, 588, 1088, 1176, 3117
SmlI	CTYRAG	1 cut(s)	3099
SmoI	CTYRAG	1 cut(s)	3099
SphI	GCATGC	1 cut(s)	1532
Sse8387I	CCTGCAGG	1 cut(s)	2034
SseBI	AGGCCT	2 cut(s)	604, 1382
SsiI	CCGC	5 cut(s)	80, 706, 2462, 2553, 2813
SspI	AATATT	1 cut(s)	673
SspMI	CTAG	5 cut(s)	1049, 1326, 1829, 2786, 3453
SstI	GAGCTC	1 cut(s)	2115
StuI	AGGCCT	2 cut(s)	604, 1382
StyD4I	CCNGG	8 cut(s)	190, 358, 472, 517, 1333, 2235, 2269, 2350
StyI	CCWWGG	4 cut(s)	116, 178, 1377, 2007
TaaI	ACNGT	7 cut(s)	1579, 1781, 2104, 2135, 2213, 2807, 3055
TaiI	ACGT	2 cut(s)	1364, 1843
TaqI	TCGA	9 cut(s)	334, 447, 1216, 1275, 2283, 2405, 2922, 3427, 3465
TaqII	GACCGA	1 cut(s)	3618
TatI	WGTACW	2 cut(s)	12, 2023
Tru1I	TTAA	5 cut(s)	1017, 1548, 2097, 2598, 3596
Tru9I	TTAA	5 cut(s)	1017, 1548, 2097, 2598, 3596
TseFI	GTSAC	4 cut(s)	998, 2694, 3146, 3238
TseI	GCWGC	5 cut(s)	1751, 1754, 2168, 2612, 3617
Tsp45I	GTSAC	4 cut(s)	998, 2694, 3146, 3238
TspGWI	ACGGA	3 cut(s)	261, 736, 2273
Van91I	CCANNNNNTGG	2 cut(s)	1580, 2542
VpaK11BI	GGWCC	2 cut(s)	557, 2573
XagI	CCTNNNNNAGG	1 cut(s)	2011
XapI	RAATTY	3 cut(s)	743, 2186, 2368
XbaI	TCTAGA	1 cut(s)	1048
XceI	RCATGY	3 cut(s)	1175, 1532, 2146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3014
XmnI	GAANNNNTTC	2 cut(s)	2187, 2841
XspI	CTAG	5 cut(s)	1049, 1326, 1829, 2786, 3453
ZraI	GACGTC	1 cut(s)	1362
Zsp2I	ATGCAT	5 cut(s)	585, 829, 1530, 1534, 2766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.