Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013339

Physical Location & Seq

Genomic Coordinates Forward (+)

50535513 .. 50540345

Gene Structure 4833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58359

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3780 bp

ATGCCGATGTACAAATACATGGATTCACACCCCGAGCAAAAAAACCAGACCTTCTCTTTCCCTCAATATCCTTACCCGCCTCACCAACCAAACCCACCTATGGCATTTGTGCCTTGGCCTTATGGTGGCAACTTTGGCTACCCAAACCCCGTGCCGTGCTATTCTTGCTGTAACCATGGTAATGCTCCTGGTTATAATGGTTTCAGACCCTCCTACCCTCAAATTCCAATGCCATCACCAGTACATTTTGCTGGTGGTTATCCTGCTCCATATCATGAAGCCTACCCTGTTCAATATGTCCCGCCTCCTCATTACTCTATGGAGCTTCCTCAATATGATTATGACAAGAAGATGCCAGGAAATTACCACTGCTGTGGGTGTCCTAATCACAGCCACGAGAATAAGGGTGTGAAGATTGAAGAACAAGAATCACCGGATGTTGTCGAAAAGATGAATGACTCATTGGTTCCGGGTCAGATGACAAATTACCCTTATCCTTCTGTTTGGATTCCACCAGGAAACATGAAGGGTGAGGAGCAAAGGAAACTTTCTGGTCCGGAGATTGTAGAGCAAAAGAAGAATCCAGATGATCATGAAAGGCCTCCTGTGAGTTTGAAATCTCAGGAAGGAGATCAAAGGCGTGGTTTGTTACCTTTTGACATGGCCAATATTGGATCTTTGATGCAAGGTGGAAATGGGGAGCGGGTTCAGGATCAACGGAGTGAGGACAGAAAAAAGGAATTTCCATTTCCAATTTTTTGGATGCCCTCTTATGATGATACTAAGCGTGATGGAGCTGGAAAGAAGGACAAGGACATGGATGCATCTCAGGATCAGCAGACTGAAGAACGAATGAGGCAACTCCCATTCCCATTCTTCTGGCTCCCTCTTGAAAATAAACAGAAGGATGTTGGAATGGAGGAGGAGAAGAATGAGGAAAATAGGAAGGTTGATGCTAATCCAAGGATTGTTCCAGCGAAGCACGCGGAGAGTATTGACAATGGGACTGGAGTTAATGAAGATAAATCTGCTGGGCTGGGTGTTATAGACAGAAAGGGAAAAGATGCTAATCAGAGAGTCATACCAGTGAAGCAAATGGATCTACCTAAAAATGAGGACAACTCTGAAGACGCTAAAAGAAGAGGAAGGGAAGTCCCTGTGAAGCATGTGGATGACAATTTAGCTAACAAACCTTCTGGTATCACTGTTCGAAGCCAGTCCTCCTCCCCAAAGAAGTCATCTAGGCTACCTCCTGTTTGTCTGAGAGTCGATCCTTTGCCAAGTACGAAGAAGAATGGCGGTGGTAGTTCCAGATCTCCTAGTCCTCCTGGTCATAAAAAAGTTCAAAAAGAGACTCCAGCAGACACTTCCAAGGCCTCTGCTTCATTTAGCTTGCCAGAGGACTCGCAACAAAATCTGAAGCCCCACAATTCAAGCAATGGAAATGAGGTAGAGCCATTCAAGAAAGAGAAGGTTATTTATGTTATGGACAAGGGAATTGGCGAAAACAATGATTCAATGCATACATCTCAGATTCCTGTTAATTCCAAACAGGTTTCCTCAAAGCCAACTGGTGGGGATGCCGGCAAAGATGGGAATCTATGTGAGGTCAATGAGGATCAAGGCACAGGAAAGATAGGAGAAACAACAGCTCAGAATGTGGAAGAGACGAAGAAAACTTCGGGGTCAGTTAAATCAGTTGTTGAGGGAAGTAATTTTGAGAGAAAGATGATATCAGATGTAGCAGCGGCTGTGCTTATTCAATCTGCTTACCGTGGATTCATGGTTAGGAGGTGGGAACCATTGAAGAAATTGAAGCAATTAGCTGAGATACGTGAGCAAGTGGCTGATATTCAGAATCAAATCATATCTTTGGAGACCTCTGATCTCAACAAAAACGATAAACAAAGAGTGGTAATCGGGGAAACCATCATGAGACTTCTTTTAAGACTGGATACCATTCAGGGTTTGCTCCCAAGTCTCAGAGACATAAGAAGATCCTTGGCAAGGGAGCTTGTACTTCTGCAGGAAAAGCTTGATGATATAATGTCTAAGAAATCCCAAGACACAACACAAGAGGTGTCCTCTGTTAAAACTGTGGAAGAGCTCAATGCCAATGGCAACAACAGTGTCTGCATGTCAGAGCAGCAAGCAGAGGAAGCAGCAAAAGATGGTGAAGAATTCCCTGCTGCTGCTAGCGATAACAGTCATGTTGCCACAGAGCCTTGCCAGGGGCAGGTGACACAAACCACGGATTCTCTCCCTGGCATGGAAGTTGAGGTACCAGAACTCTCTGAACATAAAGAGCTGGATACAGCATCTGAGAATGGACAGCATGAACTCCCTGGGGCTTGTGATCTGAATTCTAAAGGTCTTGATTCAGGACCTACAATGGAATGGAAATATAACATCGCTGATGGACAGCTTAGTGATGGACAGGCAGTGGTGGTGGATGCAGAAATGGCCAATGGTGCTACTGAGTTTGAGCAATGTGGTGAAGCTCCATCTCCTGTAGAGGACACGCCAGACCATAGTGTGGTTTCAACTGCTTCAGAAGTTACAATAAGTCCAGAGTTGTCTCAAGTAGCAGTTAATACTGAGCCTGCTGCTTCAGAGCCTGAAAATGTTGAAGCATCAGAAATGAGCAAGGATGAAATGGAACAAGGTGGAGAGGTGGAATTGACCATGTCACCTGATATAACTTCTCCAATAGCCACTGATGATGCGACTGAGAAAGAAGTGGAGATGCATGAGCTTGCAGCTTTGCAACTAGGCACAACTGATGAAGACAGTGGTGCTATTTCTGAATTGAAAAAGAACGAAGAAGTCCACATGGTGCAAGAAAACGATGTCTCAAAAAGTGGGGAAGAAGAAATAGTGGCTCTGCAACAAGAGGAGGGAACAGCGGAGGAATTGACCAAGTTGGGAGGCCTAGTTGATGAGGAACACACAGGAGATAAGGTAATTGATCCAGAGGTCGAGCACCATCACAAAAACGAAGCTGCTATAGATGATCATCTGCCAGCAGTCTCTCAAATGGTCGAATCCCAACCATTGAGCTTACCTGTTGAATCTCGTGGAGTGGTGCATGAAAATAGGCCTTCAGACTTGATTGATGGTGTTGACGCTTGCTTGCCTACAGTGGTTGATGCTGACACGCCTAATGAGGATGAGGTTGAGAAAAGTAGAGAAGCCTATAAAGACCAGCAAGCAGTGACCATAGAAGACGATACAGAGATGAAAGAGAACAAAGCTGAAAGCGAAGACAGCAAAGAGGATGTCTTCTCTGAGAAGAGTGAGCCATTGCCCGCAGATGCTGAAACTGCCAAAGAGGATGTCCTCATTGAGAGGAGTGAGCCATTGCCTGCAGATGCTGAAACTGCCAAAGAGGATGTCCTCATTGAGAGGAGTGAGCCATTGCCTGCAGATGCTGAAACTGCCAAAGAGGATGTCCTCATTGAGAAGAGTGAGCCATTGCCTGCATCGCCGATCGTGACTGAGGTTTCCTCCGGTGATGGAAGCGTCGTGGGAGATGAAGGTGCTAGGAAGTTAATTAAAGAGAATGAGAAGCTAAGGGAAACGTTGCAGAAGTTGATGGTAGCAGGAAAAGACCAACTACAAGTGATATCCGACCTCACCGGTAGAGTGAAAGATTTGGAGAAAAAGTTGGCTAAGAAGAAGAAATTAAGAACAAAAAGGTGTAGGGCTGCATCATCTCGGTCTTCGTGTGTCAAACCATCAAGCAATCACTTGAAGGAGAGGACTGGCGTTGCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005911 GO:0006457 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009791 GO:0009814 GO:0009817 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010035 GO:0010228 GO:0010506 GO:0010508 GO:0010941 GO:0010942 GO:0012502 GO:0019222 GO:0022414 GO:0030054 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0043067 GO:0043068 GO:0043207 GO:0044237 GO:0044248 GO:0045087 GO:0046677 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0061919 GO:0065007 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG IQ

Protein Analysis

1259

Amino Acids

138.68

Weight (kDa)

4.79

Isoelectric Point (pI)

59.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	609 - 681	1e-08	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46240
fragaria_vesca	FvH4_7g15690 FvH4_7g15690
malus_domestica	MD01G1073600.v1.1
prunus_persica	Prupe.2G181700_v2.0.a1
pyrus_communis	pycom01g10280
rosa_chinensis	RchiOBHm_Chr1g0358421
rosa_laevigata	RLG00000027961
rosa_multiflora	Rmu_sc0041976.1_g000002 Rmu_ssc0000348.1_g000008
rosa_roxburghii	Rroxscaffold_4G00297950
rosa_rugosa	Rorug01G0261700 Rorug01G0261800
rosa_samantha	Rh1AG275900 Rh1BG242700 Rh1CG259700 Rh1DG271100
rosa_wichuraiana	Rw1G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
AarI	CACCTGC	1 cut(s)	2227
Acc36I	ACCTGC	1 cut(s)	2227
Acc65I	GGTACC	1 cut(s)	2281
AccB1I	GGYRCC	1 cut(s)	2281
AccB7I	CCANNNNNTGG	2 cut(s)	1574, 2536
AccBSI	CCGCTC	1 cut(s)	703
AccII	CGCG	1 cut(s)	986
AccIII	TCCGGA	1 cut(s)	556
AciI	CCGC	8 cut(s)	77, 302, 703, 986, 1299, 1748, 2906, 3309
AclI	AACGTT	1 cut(s)	3581
AclWI	GGATC	8 cut(s)	682, 720, 840, 1107, 1265, 1626, 1992, 2963
AcoI	YGGCCR	2 cut(s)	663, 2463
AcsI	RAATTY	4 cut(s)	222, 740, 2180, 2362
AcuI	CTGAAG	6 cut(s)	864, 1146, 1439, 2535, 2595, 3087
AdeI	CACNNNGTG	1 cut(s)	2836
AfaI	GTAC	5 cut(s)	11, 243, 1285, 2019, 2283
AfiI	CCNNNNNNNGG	8 cut(s)	100, 125, 1574, 2007, 2231, 2236, 2269, 2536
AgeI	ACCGGT	1 cut(s)	3638
AjnI	CCWGG	7 cut(s)	187, 355, 514, 1327, 2229, 2263, 2344
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AleI	CACNNNNGTG	1 cut(s)	372
Alw21I	GWGCWC	2 cut(s)	2109, 2985
Alw26I	GTCTC	9 cut(s)	1346, 1661, 1871, 1930, 1980, 1985, 2583, 2857, 3034
AlwI	GGATC	8 cut(s)	682, 720, 840, 1107, 1265, 1626, 1992, 2963
AlwNI	CAGNNNCTG	7 cut(s)	1751, 2133, 2321, 2618, 3317, 3374, 3431
Ama87I	CYCGRG	1 cut(s)	32
Aor13HI	TCCGGA	1 cut(s)	556
AoxI	GGCC	7 cut(s)	116, 599, 663, 1374, 2463, 2929, 3098
ApeKI	GCWGC	9 cut(s)	1745, 2146, 2162, 2189, 2192, 2606, 2759, 3002, 3707
ApoI	RAATTY	4 cut(s)	222, 740, 2180, 2362
ArsI	GACNNNNNNTTYG	8 cut(s)	3264, 3296, 3321, 3353, 3378, 3410, 3435, 3467
AsiGI	ACCGGT	1 cut(s)	3638
Asp718I	GGTACC	1 cut(s)	2281
AspS9I	GGNCC	2 cut(s)	554, 2384
AsuC2I	CCSGG	1 cut(s)	471
AsuII	TTCGAA	1 cut(s)	1210
AsuNHI	GCTAGC	1 cut(s)	2195
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	2 cut(s)	554, 2384
BalI	TGGCCA	2 cut(s)	665, 2465
BanI	GGYRCC	1 cut(s)	2281
BanII	GRGCYC	1 cut(s)	2109
BarI	GAAGNNNNNNTAC	2 cut(s)	2265, 2297
BauI	CACGAG	2 cut(s)	395, 3075
BbsI	GAAGAC	6 cut(s)	1134, 2793, 3231, 3270, 3274, 3714
Bbv12I	GWGCWC	2 cut(s)	2109, 2985
BbvI	GCAGC	9 cut(s)	1757, 2158, 2174, 2176, 2179, 2593, 2771, 2989, 3694
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	7 cut(s)	189, 357, 516, 1329, 2231, 2265, 2346
BciVI	GTATCC	2 cut(s)	1948, 2305
BclI	TGATCA	2 cut(s)	589, 3013
BcnI	CCSGG	1 cut(s)	471
BcoDI	GTCTC	9 cut(s)	1346, 1661, 1871, 1930, 1980, 1985, 2583, 2857, 3034
BfaI	CTAG	6 cut(s)	1242, 1320, 2196, 2771, 2933, 3543
BfmI	CTRYAG	6 cut(s)	2024, 2511, 3006, 3138, 3366, 3423
BfuAI	ACCTGC	1 cut(s)	2227
BfuI	GTATCC	2 cut(s)	1948, 2305
BglII	AGATCT	1 cut(s)	1313
Bme1390I	CCNGG	8 cut(s)	189, 357, 471, 516, 1329, 2231, 2265, 2346
Bme18I	GGWCC	2 cut(s)	554, 2384
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	554, 2384
BmiI	GGNNCC	4 cut(s)	468, 884, 1800, 2283
BmrFI	CCNGG	8 cut(s)	189, 357, 471, 516, 1329, 2231, 2265, 2346
BmtI	GCTAGC	1 cut(s)	2199
BpiI	GAAGAC	6 cut(s)	1134, 2793, 3231, 3270, 3274, 3714
BplI	GAGNNNNNCTC	6 cut(s)	1106, 1138, 2069, 2101, 3491, 3523
BpmI	CTGGAG	2 cut(s)	1029, 1341
Bpu10I	CCTNAGC	1 cut(s)	3572
Bpu14I	TTCGAA	1 cut(s)	1210
BpuEI	CTTGAG	1 cut(s)	2565
BpuMI	CCSGG	1 cut(s)	471
BsaAI	YACGTR	1 cut(s)	1835
BsaBI	GATNNNNATC	4 cut(s)	957, 1068, 1596, 3015
BsaI	GGTCTC	1 cut(s)	1871
BsaWI	WCCGGW	4 cut(s)	433, 556, 3509, 3638
BsaXI	ACNNNNNCTCC	6 cut(s)	2919, 2946, 2949, 2976, 3650, 3680
Bsc4I	CCNNNNNNNGG	8 cut(s)	100, 125, 1574, 2007, 2231, 2236, 2269, 2536
Bse118I	RCCGGY	2 cut(s)	1583, 3638
Bse1I	ACTGG	7 cut(s)	239, 1012, 1085, 1216, 1576, 1956, 3769
Bse3DI	GCAATG	7 cut(s)	1444, 2495, 3302, 3359, 3416, 3473, 3780
Bse8I	GATNNNNATC	4 cut(s)	957, 1068, 1596, 3015
BseAI	TCCGGA	1 cut(s)	556
BseBI	CCWGG	7 cut(s)	189, 357, 516, 1329, 2231, 2265, 2346
BseJI	GATNNNNATC	4 cut(s)	957, 1068, 1596, 3015
BseLI	CCNNNNNNNGG	8 cut(s)	100, 125, 1574, 2007, 2231, 2236, 2269, 2536
BseMI	GCAATG	7 cut(s)	1444, 2495, 3302, 3359, 3416, 3473, 3780
BseNI	ACTGG	7 cut(s)	239, 1012, 1085, 1216, 1576, 1956, 3769
BseRI	GAGGAG	8 cut(s)	297, 548, 935, 938, 1213, 2909, 3364, 3421
BseXI	GCAGC	9 cut(s)	1757, 2158, 2174, 2176, 2179, 2593, 2771, 2989, 3694
BseYI	CCCAGC	2 cut(s)	1031, 1036
Bsh1236I	CGCG	1 cut(s)	986
Bsh1285I	CGRYCG	1 cut(s)	3492
BshFI	GGCC	7 cut(s)	118, 601, 665, 1376, 2465, 2931, 3100
BshNI	GGYRCC	1 cut(s)	2281
BshTI	ACCGGT	1 cut(s)	3638
BsiEI	CGRYCG	1 cut(s)	3492
BsiHKAI	GWGCWC	2 cut(s)	2109, 2985
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	6 cut(s)	434, 470, 557, 1584, 3510, 3639
BslFI	GGGAC	3 cut(s)	284, 1018, 1139
BslI	CCNNNNNNNGG	8 cut(s)	100, 125, 1574, 2007, 2231, 2236, 2269, 2536
BsmAI	GTCTC	9 cut(s)	1346, 1661, 1871, 1930, 1980, 1985, 2583, 2857, 3034
BsmBI	CGTCTC	1 cut(s)	1661
BsmFI	GGGAC	3 cut(s)	284, 1018, 1139
BsnI	GGCC	7 cut(s)	118, 601, 665, 1376, 2465, 2931, 3100
Bso31I	GGTCTC	1 cut(s)	1871
BsoBI	CYCGRG	1 cut(s)	32
Bsp119I	TTCGAA	1 cut(s)	1210
Bsp1286I	GDGCHC	2 cut(s)	2109, 2985
Bsp13I	TCCGGA	1 cut(s)	556
Bsp1407I	TGTACA	1 cut(s)	9
Bsp19I	CCATGG	1 cut(s)	175
BspACI	CCGC	8 cut(s)	77, 302, 703, 986, 1299, 1748, 2906, 3309
BspANI	GGCC	7 cut(s)	118, 601, 665, 1376, 2465, 2931, 3100
BspEI	TCCGGA	1 cut(s)	556
BspFNI	CGCG	1 cut(s)	986
BspHI	TCATGA	3 cut(s)	274, 592, 1932
BspLI	GGNNCC	4 cut(s)	468, 884, 1800, 2283
BspMAI	CTGCAG	3 cut(s)	2028, 3370, 3427
BspMI	ACCTGC	1 cut(s)	2227
BspOI	GCTAGC	1 cut(s)	2199
BspPI	GGATC	8 cut(s)	682, 720, 840, 1107, 1265, 1626, 1992, 2963
BspQI	GCTCTTC	1 cut(s)	2097
BspT104I	TTCGAA	1 cut(s)	1210
BspT107I	GGYRCC	1 cut(s)	2281
BspTNI	GGTCTC	1 cut(s)	1871
BsrBI	CCGCTC	1 cut(s)	703
BsrDI	GCAATG	7 cut(s)	1444, 2495, 3302, 3359, 3416, 3473, 3780
BsrFI	RCCGGY	2 cut(s)	1583, 3638
BsrGI	TGTACA	1 cut(s)	9
BsrI	ACTGG	7 cut(s)	239, 1012, 1085, 1216, 1576, 1956, 3769
BssAI	RCCGGY	2 cut(s)	1583, 3638
BssSI	CACGAG	2 cut(s)	395, 3075
BssT1I	CCWWGG	5 cut(s)	113, 175, 962, 1371, 2001
Bst2BI	CACGAG	2 cut(s)	395, 3075
Bst2UI	CCWGG	7 cut(s)	189, 357, 516, 1329, 2231, 2265, 2346
Bst4CI	ACNGT	7 cut(s)	1207, 1775, 2098, 2129, 2207, 2792, 3142
Bst6I	CTCTTC	5 cut(s)	1135, 1659, 2097, 3287, 3458
BstAUI	TGTACA	1 cut(s)	9
BstBAI	YACGTR	1 cut(s)	1835
BstBI	TTCGAA	1 cut(s)	1210
BstDSI	CCRYGG	3 cut(s)	175, 1774, 2250
BstENI	CCTNNNNNAGG	1 cut(s)	2005
BstFNI	CGCG	1 cut(s)	986
BstMAI	GTCTC	9 cut(s)	1346, 1661, 1871, 1930, 1980, 1985, 2583, 2857, 3034
BstMCI	CGRYCG	1 cut(s)	3492
BstNI	CCWGG	7 cut(s)	189, 357, 516, 1329, 2231, 2265, 2346
BstNSI	RCATGY	2 cut(s)	1169, 2140
BstSCI	CCNGG	8 cut(s)	187, 355, 469, 514, 1327, 2229, 2263, 2344
BstSFI	CTRYAG	6 cut(s)	2024, 2511, 3006, 3138, 3366, 3423
BstUI	CGCG	1 cut(s)	986
BstV1I	GCAGC	9 cut(s)	1757, 2158, 2174, 2176, 2179, 2593, 2771, 2989, 3694
BstV2I	GAAGAC	6 cut(s)	1134, 2793, 3231, 3270, 3274, 3714
BstX2I	RGATCY	4 cut(s)	674, 1099, 1313, 1997
BstXI	CCANNNNNNTGG	3 cut(s)	374, 759, 879
BstYI	RGATCY	4 cut(s)	674, 1099, 1313, 1997
BsuI	GTATCC	2 cut(s)	1948, 2305
BsuRI	GGCC	7 cut(s)	118, 601, 665, 1376, 2465, 2931, 3100
BtgI	CCRYGG	3 cut(s)	175, 1774, 2250
BtgZI	GCGATG	2 cut(s)	2395, 3468
BtsI	GCAGTG	3 cut(s)	367, 2448, 3219
BtsIMutI	CAGTG	9 cut(s)	367, 1092, 1203, 2134, 2448, 2715, 2797, 3147, 3219
BveI	ACCTGC	1 cut(s)	2227
CaiI	CAGNNNCTG	7 cut(s)	1751, 2133, 2321, 2618, 3317, 3374, 3431
CciI	TCATGA	3 cut(s)	274, 592, 1932
Cfr10I	RCCGGY	2 cut(s)	1583, 3638
Cfr13I	GGNCC	2 cut(s)	554, 2384
CseI	GACGC	3 cut(s)	1139, 3134, 3511
Csp6I	GTAC	5 cut(s)	10, 242, 1284, 2018, 2282
CspAI	ACCGGT	1 cut(s)	3638
CviQI	GTAC	5 cut(s)	10, 242, 1284, 2018, 2282
DraIII	CACNNNGTG	1 cut(s)	2836
EaeI	YGGCCR	2 cut(s)	663, 2463
Eam1104I	CTCTTC	5 cut(s)	1135, 1659, 2097, 3287, 3458
EarI	CTCTTC	5 cut(s)	1135, 1659, 2097, 3287, 3458
Ecl136II	GAGCTC	1 cut(s)	2107
Eco130I	CCWWGG	5 cut(s)	113, 175, 962, 1371, 2001
Eco147I	AGGCCT	4 cut(s)	601, 1376, 2931, 3100
Eco24I	GRGCYC	1 cut(s)	2109
Eco31I	GGTCTC	1 cut(s)	1871
Eco32I	GATATC	2 cut(s)	1734, 3627
Eco47I	GGWCC	2 cut(s)	554, 2384
Eco53kI	GAGCTC	1 cut(s)	2107
Eco57I	CTGAAG	6 cut(s)	864, 1146, 1439, 2535, 2595, 3087
Eco88I	CYCGRG	1 cut(s)	32
EcoICRI	GAGCTC	1 cut(s)	2107
EcoNI	CCTNNNNNAGG	1 cut(s)	2005
EcoO109I	RGGNCCY	1 cut(s)	2384
EcoRI	GAATTC	2 cut(s)	2180, 2362
EcoRII	CCWGG	7 cut(s)	187, 355, 514, 1327, 2229, 2263, 2344
EcoRV	GATATC	2 cut(s)	1734, 3627
EcoT14I	CCWWGG	5 cut(s)	113, 175, 962, 1371, 2001
EcoT22I	ATGCAT	3 cut(s)	826, 1524, 2751
EcoT38I	GRGCYC	1 cut(s)	2109
ErhI	CCWWGG	5 cut(s)	113, 175, 962, 1371, 2001
Esp3I	CGTCTC	1 cut(s)	1661
FaqI	GGGAC	3 cut(s)	284, 1018, 1139
FauI	CCCGC	4 cut(s)	84, 309, 696, 3316
FbaI	TGATCA	2 cut(s)	589, 3013
FriOI	GRGCYC	1 cut(s)	2109
FspBI	CTAG	6 cut(s)	1242, 1320, 2196, 2771, 2933, 3543
GsaI	CCCAGC	2 cut(s)	1035, 1040
GsuI	CTGGAG	2 cut(s)	1029, 1341
HaeIII	GGCC	7 cut(s)	118, 601, 665, 1376, 2465, 2931, 3100
HapII	CCGG	6 cut(s)	434, 470, 557, 1584, 3510, 3639
HgaI	GACGC	3 cut(s)	1139, 3134, 3511
HincII	GTYRAC	1 cut(s)	3124
HindII	GTYRAC	1 cut(s)	3124
HindIII	AAGCTT	1 cut(s)	2033
HpaII	CCGG	6 cut(s)	434, 470, 557, 1584, 3510, 3639
Hpy166II	GTNNAC	2 cut(s)	2830, 3124
Hpy8I	GTNNAC	2 cut(s)	2830, 3124
Hpy99I	CGWCG	1 cut(s)	3527
HpyCH4III	ACNGT	7 cut(s)	1207, 1775, 2098, 2129, 2207, 2792, 3142
HpyCH4IV	ACGT	2 cut(s)	1834, 3581
HpySE526I	ACGT	2 cut(s)	1834, 3581
Kpn2I	TCCGGA	1 cut(s)	556
KpnI	GGTACC	1 cut(s)	2285
KroI	GCCGGC	1 cut(s)	1583
KroNI	GCCGGC	1 cut(s)	1585
Ksp22I	TGATCA	2 cut(s)	589, 3013
LguI	GCTCTTC	1 cut(s)	2097
Lsp1109I	GCAGC	9 cut(s)	1757, 2158, 2174, 2176, 2179, 2593, 2771, 2989, 3694
MaeI	CTAG	6 cut(s)	1242, 1320, 2196, 2771, 2933, 3543
MaeII	ACGT	2 cut(s)	1834, 3581
MaeIII	GTNAC	7 cut(s)	170, 648, 2239, 2557, 2688, 3214, 3493
MbiI	CCGCTC	1 cut(s)	703
MflI	RGATCY	4 cut(s)	674, 1099, 1313, 1997
MhlI	GDGCHC	2 cut(s)	2109, 2985
MlsI	TGGCCA	2 cut(s)	665, 2465
MluNI	TGGCCA	2 cut(s)	665, 2465
MlyI	GAGTC	5 cut(s)	452, 1086, 1275, 1348, 1397
MmeI	TCCRAC	2 cut(s)	892, 3654
Mox20I	TGGCCA	2 cut(s)	665, 2465
Mph1103I	ATGCAT	3 cut(s)	826, 1524, 2751
MroI	TCCGGA	1 cut(s)	556
MroNI	GCCGGC	1 cut(s)	1583
MscI	TGGCCA	2 cut(s)	665, 2465
MseI	TTAA	9 cut(s)	1014, 1542, 1692, 1946, 2091, 2592, 3551, 3555, 3686
MslI	CAYNNNNRTG	4 cut(s)	180, 372, 1085, 1170
Msp20I	TGGCCA	2 cut(s)	665, 2465
MspA1I	CMGCKG	2 cut(s)	1748, 2906
MspI	CCGG	6 cut(s)	434, 470, 557, 1584, 3510, 3639
MspR9I	CCNGG	8 cut(s)	189, 357, 471, 516, 1329, 2231, 2265, 2346
MvaI	CCWGG	7 cut(s)	189, 357, 516, 1329, 2231, 2265, 2346
MvnI	CGCG	1 cut(s)	986
NaeI	GCCGGC	1 cut(s)	1585
NciI	CCSGG	1 cut(s)	471
NcoI	CCATGG	1 cut(s)	175
NgoMIV	GCCGGC	1 cut(s)	1583
NheI	GCTAGC	1 cut(s)	2195
NlaIV	GGNNCC	4 cut(s)	468, 884, 1800, 2283
NmuCI	GTSAC	4 cut(s)	2239, 2688, 3214, 3493
NsiI	ATGCAT	3 cut(s)	826, 1524, 2751
NspI	RCATGY	2 cut(s)	1169, 2140
NspV	TTCGAA	1 cut(s)	1210
OliI	CACNNNNGTG	1 cut(s)	372
PacI	TTAATTAA	1 cut(s)	3555
PagI	TCATGA	3 cut(s)	274, 592, 1932
PaqCI	CACCTGC	1 cut(s)	2227
PasI	CCCWGGG	1 cut(s)	2345
PceI	AGGCCT	4 cut(s)	601, 1376, 2931, 3100
PciSI	GCTCTTC	1 cut(s)	2097
PdiI	GCCGGC	1 cut(s)	1585
PflFI	GACNNNGTC	1 cut(s)	2686
PflMI	CCANNNNNTGG	2 cut(s)	1574, 2536
PinAI	ACCGGT	1 cut(s)	3638
Ple19I	CGATCG	1 cut(s)	3492
PleI	GAGTC	5 cut(s)	452, 1085, 1274, 1348, 1397
PpsI	GAGTC	5 cut(s)	452, 1085, 1274, 1348, 1397
Ppu21I	YACGTR	1 cut(s)	1835
PpuMI	RGGWCCY	1 cut(s)	2384
PsiI	TTATAA	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	2109
Psp1406I	AACGTT	1 cut(s)	3581
Psp5II	RGGWCCY	1 cut(s)	2384
Psp6I	CCWGG	7 cut(s)	187, 355, 514, 1327, 2229, 2263, 2344
PspFI	CCCAGC	2 cut(s)	1031, 1036
PspGI	CCWGG	7 cut(s)	187, 355, 514, 1327, 2229, 2263, 2344
PspN4I	GGNNCC	4 cut(s)	468, 884, 1800, 2283
PspPI	GGNCC	2 cut(s)	554, 2384
PspPPI	RGGWCCY	1 cut(s)	2384
PstI	CTGCAG	3 cut(s)	2028, 3370, 3427
PstNI	CAGNNNCTG	7 cut(s)	1751, 2133, 2321, 2618, 3317, 3374, 3431
PsuI	RGATCY	4 cut(s)	674, 1099, 1313, 1997
PsyI	GACNNNGTC	1 cut(s)	2686
PvuI	CGATCG	1 cut(s)	3492
RsaI	GTAC	5 cut(s)	11, 243, 1285, 2019, 2283
RsaNI	GTAC	5 cut(s)	10, 242, 1284, 2018, 2282
RseI	CAYNNNNRTG	4 cut(s)	180, 372, 1085, 1170
SacI	GAGCTC	1 cut(s)	2109
SapI	GCTCTTC	1 cut(s)	2097
SaqAI	TTAA	9 cut(s)	1014, 1542, 1692, 1946, 2091, 2592, 3551, 3555, 3686
Sau96I	GGNCC	2 cut(s)	554, 2384
SchI	GAGTC	5 cut(s)	452, 1086, 1275, 1348, 1397
ScrFI	CCNGG	8 cut(s)	189, 357, 471, 516, 1329, 2231, 2265, 2346
SduI	GDGCHC	2 cut(s)	2109, 2985
SfcI	CTRYAG	6 cut(s)	2024, 2511, 3006, 3138, 3366, 3423
SfuI	TTCGAA	1 cut(s)	1210
SinI	GGWCC	2 cut(s)	554, 2384
SmiMI	CAYNNNNRTG	4 cut(s)	180, 372, 1085, 1170
SmlI	CTYRAG	1 cut(s)	2580
SmoI	CTYRAG	1 cut(s)	2580
SseBI	AGGCCT	4 cut(s)	601, 1376, 2931, 3100
SsiI	CCGC	8 cut(s)	77, 302, 703, 986, 1299, 1748, 2906, 3309
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	6 cut(s)	1242, 1320, 2196, 2771, 2933, 3543
SstI	GAGCTC	1 cut(s)	2109
StuI	AGGCCT	4 cut(s)	601, 1376, 2931, 3100
StyD4I	CCNGG	8 cut(s)	187, 355, 469, 514, 1327, 2229, 2263, 2344
StyI	CCWWGG	5 cut(s)	113, 175, 962, 1371, 2001
TaaI	ACNGT	7 cut(s)	1207, 1775, 2098, 2129, 2207, 2792, 3142
TaiI	ACGT	2 cut(s)	1837, 3584
TaqI	TCGA	5 cut(s)	444, 1210, 1269, 2979, 3042
TaqII	GACCGA	1 cut(s)	3708
TatI	WGTACW	3 cut(s)	9, 241, 2017
TauI	GCSGC	1 cut(s)	1751
Tru1I	TTAA	9 cut(s)	1014, 1542, 1692, 1946, 2091, 2592, 3551, 3555, 3686
Tru9I	TTAA	9 cut(s)	1014, 1542, 1692, 1946, 2091, 2592, 3551, 3555, 3686
TscAI	CASTG	9 cut(s)	374, 1092, 1210, 2134, 2448, 2722, 2797, 3147, 3219
TseFI	GTSAC	4 cut(s)	2239, 2688, 3214, 3493
TseI	GCWGC	9 cut(s)	1745, 2146, 2162, 2189, 2192, 2606, 2759, 3002, 3707
Tsp45I	GTSAC	4 cut(s)	2239, 2688, 3214, 3493
TspGWI	ACGGA	2 cut(s)	733, 2267
TspRI	CASTG	9 cut(s)	374, 1092, 1210, 2134, 2448, 2722, 2797, 3147, 3219
Tth111I	GACNNNGTC	1 cut(s)	2686
Van91I	CCANNNNNTGG	2 cut(s)	1574, 2536
VpaK11BI	GGWCC	2 cut(s)	554, 2384
XagI	CCTNNNNNAGG	1 cut(s)	2005
XapI	RAATTY	4 cut(s)	222, 740, 2180, 2362
XceI	RCATGY	2 cut(s)	1169, 2140
XspI	CTAG	6 cut(s)	1242, 1320, 2196, 2771, 2933, 3543
Zsp2I	ATGCAT	3 cut(s)	826, 1524, 2751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.