Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0013339

Physical Location & Seq

Genomic Coordinates Forward (+)

37175449 .. 37175983

Gene Structure 535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0261700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTCTGTCCAACTTTCTTCAGCATCTGAAGCCCAGAGCCCAAATGCCACTGCTGCTGTCAAGCGACGTTCAGCTAATTTTCCGCCTAGCATGTGGGGTGAATATTTTCTGTCATATGCTTCCATGGAAGTGGATATTACTCTTGAGCATCAGGTTCAACAACTGAAGGAAGAAGTGAAGAGGATGTTTATGGATAATGTTAGAGACAGTTCCCAAAAACTAAGCTTGATTGATGACATTCAACGCCTAGGCGTGTCCTACCATTTCGACAATGAGATTTGTGAAATTTTGCAACAAATATTTGACAATGACCATGTTTCATATGATAATCTTCATCAAAATAATTCCGACCTTTATGCAGCTGCTCTTCGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005911 GO:0006457 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009791 GO:0009814 GO:0009817 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010035 GO:0010228 GO:0010506 GO:0010508 GO:0010941 GO:0010942 GO:0012502 GO:0019222 GO:0022414 GO:0030054 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0043067 GO:0043068 GO:0043207 GO:0044237 GO:0044248 GO:0045087 GO:0046677 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0061919 GO:0065007 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG IQ

Protein Analysis

125

Amino Acids

14.38

Weight (kDa)

4.77

Isoelectric Point (pI)

61.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	31 - 125	4e-21	Terpene synthase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0013339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46240
fragaria_vesca	FvH4_7g15690 FvH4_7g15690
malus_domestica	MD01G1073600.v1.1
prunus_persica	Prupe.2G181700_v2.0.a1
pyrus_communis	pycom01g10280
rosa_chinensis	RchiOBHm_Chr1g0358421
rosa_laevigata	RLG00000027961
rosa_multiflora	Rmu_sc0041976.1_g000002 Rmu_ssc0000348.1_g000008
rosa_roxburghii	Rroxscaffold_4G00297950
rosa_rugosa	Rorug01G0261700 Rorug01G0261800
rosa_samantha	Rh1AG275900 Rh1BG242700 Rh1CG259700 Rh1DG271100
rosa_wichuraiana	Rw1G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	83
AcsI	RAATTY	1 cut(s)	285
AcuI	CTGAAG	2 cut(s)	48, 185
AgsI	TTSAA	2 cut(s)	158, 242
AluBI	AGCT	3 cut(s)	74, 225, 362
AluI	AGCT	3 cut(s)	74, 225, 362
Alw26I	GTCTC	1 cut(s)	198
AlwNI	CAGNNNCTG	1 cut(s)	26
ApeKI	GCWGC	3 cut(s)	53, 359, 362
ApoI	RAATTY	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	105
AspA2I	CCTAGG	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	110
AvrII	CCTAGG	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	41
BbvI	GCAGC	3 cut(s)	40, 349, 371
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	2 cut(s)	87, 248
BisI	GCNGC	3 cut(s)	54, 360, 363
BlnI	CCTAGG	1 cut(s)	247
BlsI	GCNGC	3 cut(s)	55, 361, 364
BmsI	GCATC	2 cut(s)	32, 157
BpuEI	CTTGAG	1 cut(s)	164
BsaJI	CCNNGG	2 cut(s)	123, 247
BseDI	CCNNGG	2 cut(s)	123, 247
BseGI	GGATG	1 cut(s)	189
BseXI	GCAGC	3 cut(s)	40, 349, 371
BsmAI	GTCTC	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	1 cut(s)	83
BspQI	GCTCTTC	1 cut(s)	372
BssECI	CCNNGG	2 cut(s)	123, 247
BssT1I	CCWWGG	2 cut(s)	123, 247
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	2 cut(s)	173, 372
BstDEI	CTNAG	1 cut(s)	221
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	189
BstMAI	GTCTC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 53
BstNSI	RCATGY	1 cut(s)	94
BstV1I	GCAGC	3 cut(s)	40, 349, 371
BstXI	CCANNNNNNTGG	1 cut(s)	130
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	189
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	48
CaiI	CAGNNNCTG	1 cut(s)	26
CviAII	CATG	3 cut(s)	91, 124, 314
CviJI	RGCY	5 cut(s)	32, 39, 74, 225, 362
CviKI_1	RGCY	5 cut(s)	32, 39, 74, 225, 362
DdeI	CTNAG	1 cut(s)	221
Eam1104I	CTCTTC	2 cut(s)	173, 372
EarI	CTCTTC	2 cut(s)	173, 372
EciI	GGCGGA	1 cut(s)	72
Eco130I	CCWWGG	2 cut(s)	123, 247
Eco24I	GRGCYC	1 cut(s)	41
Eco57I	CTGAAG	2 cut(s)	48, 185
EcoT14I	CCWWGG	2 cut(s)	123, 247
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	2 cut(s)	123, 247
FaeI	CATG	3 cut(s)	94, 127, 317
FaiI	YATR	9 cut(s)	92, 115, 117, 125, 191, 315, 322, 324, 357
FatI	CATG	3 cut(s)	90, 123, 313
FauNDI	CATATG	2 cut(s)	115, 322
Fnu4HI	GCNGC	3 cut(s)	54, 360, 363
FokI	GGATG	1 cut(s)	196
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	3 cut(s)	54, 360, 363
FspBI	CTAG	2 cut(s)	87, 248
GluI	GCNGC	3 cut(s)	54, 360, 363
Hin1II	CATG	3 cut(s)	94, 127, 317
HindIII	AAGCTT	1 cut(s)	223
HphI	GGTGA	1 cut(s)	110
Hpy188I	TCNGA	3 cut(s)	28, 349, 377
Hpy188III	TCNNGA	1 cut(s)	143
Hpy99I	CGWCG	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	292, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 53
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	3 cut(s)	94, 127, 317
LguI	GCTCTTC	1 cut(s)	372
LpnPI	CCDG	2 cut(s)	47, 137
Lsp1109I	GCAGC	3 cut(s)	40, 349, 371
LweI	GCATC	2 cut(s)	32, 157
MaeI	CTAG	2 cut(s)	87, 248
MaeII	ACGT	1 cut(s)	67
MboII	GAAGA	5 cut(s)	9, 182, 190, 323, 359
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	3 cut(s)	76, 285, 343
MmeI	TCCRAC	2 cut(s)	34, 372
MnlI	CCTC	1 cut(s)	174
MroXI	GAANNNNTTC	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	362
MwoI	GCNNNNNNNGC	2 cut(s)	29, 53
NcoI	CCATGG	1 cut(s)	123
NdeI	CATATG	2 cut(s)	115, 322
NlaIII	CATG	3 cut(s)	94, 127, 317
NspI	RCATGY	1 cut(s)	94
PciSI	GCTCTTC	1 cut(s)	372
PdmI	GAANNNNTTC	1 cut(s)	105
PkrI	GCNGC	3 cut(s)	55, 361, 364
PstNI	CAGNNNCTG	1 cut(s)	26
PvuII	CAGCTG	1 cut(s)	362
RseI	CAYNNNNRTG	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	372
SatI	GCNGC	3 cut(s)	54, 360, 363
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	6 cut(s)	70, 76, 156, 227, 354, 364
SfaNI	GCATC	2 cut(s)	32, 157
SmiMI	CAYNNNNRTG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	3 cut(s)	76, 285, 343
SsiI	CCGC	1 cut(s)	83
SspI	AATATT	2 cut(s)	104, 300
SspMI	CTAG	2 cut(s)	87, 248
StyI	CCWWGG	2 cut(s)	123, 247
TaaI	ACNGT	1 cut(s)	209
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	267
TasI	AATT	3 cut(s)	76, 285, 343
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	3 cut(s)	53, 359, 362
TspDTI	ATGAA	2 cut(s)	309, 323
TspRI	CASTG	1 cut(s)	55
XapI	RAATTY	1 cut(s)	285
XceI	RCATGY	1 cut(s)	94
XmaJI	CCTAGG	1 cut(s)	247
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	2 cut(s)	87, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.