Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0013339

Physical Location & Seq

Genomic Coordinates Forward (+)

37176133 .. 37199475

Gene Structure 23343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0261800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGATGGGCTTATCTCGAGTGTGCAACACGTCGTGGTTTAAGCTCCCCACTTTTGAAACAAGTAACTCACGCCTTGTATTAGCCACTTTGGAAGGGCATGTCAAGGATAGAAGTTGGTTGAGTGCTACTTTTTCGCTTTGGGTACCTTCTTTGAGCCGGAATATTACTTTGCTAGGAGGGCATTATGCAAAGTTATTTACATGCATGGTAGCCGCGATTGATGGCATCTATGATGTTCATGGCACACTTGAAGAACTAGAACTCTTTAATGAAGCTATTCAGAGGTGGGACATCTCTGCCATGGATCAATTGCCAGACTATATGAAAGTCTGTTACCAGGCATTGTTGGATGTCTACATTGAAATTGAAGAAAAACTTGCAAGCGAGGGAAACTTATATGGCATTTACCATGCAAGAGAATCGATGAAAATCCATGTCGATGGTTACATTAAAGAAGCCAGATGGTTTCACTCGAAATACACCCCAACTTTTGATGAATATATGCCACTAGCAGTTCATTTATCCTCGTATATGCTGTCAATCACCTCCACTGTTGGAATGGGACTTGCGGCTACAAAAGACTCCTTGGATTGGTTACTCACTAACCCTGAGATCCTAAACACTGTATCAACAGTTGGCAGACTCTTAAACGACATTATGTCCCATCAGTTTGAACAAAAGAGAGGGCATTCTGCTTCAGCTATGGAACTATACATGAAAGAGCATGGTGCTACAGAAAAAGAAGCCATAGTGGAACTAACTAATCAAGTGAATGATGCATGGAAGGTCATAAACAAAGCTTGCCTCCACCCTACCCGAATCCCATTGCCGATTCTAATGCGACCTCTCAACAATGCACGTGTGTCAGAAGTTTTCTACAAGAATATAGACTCCTTTACGGGCCCTGGGGCTGAGCTCAAGGGTTTTGTGACTTCTCTGTTTATCAAACCTGTGCCAACTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005911 GO:0006457 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009791 GO:0009814 GO:0009817 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010035 GO:0010228 GO:0010506 GO:0010508 GO:0010941 GO:0010942 GO:0012502 GO:0019222 GO:0022414 GO:0030054 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0043067 GO:0043068 GO:0043207 GO:0044237 GO:0044248 GO:0045087 GO:0046677 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0061919 GO:0065007 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG IQ

Protein Analysis

321

Amino Acids

36.29

Weight (kDa)

5.89

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	66 - 262	5.2e-70	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	66 - 262	6.3e-53	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46240
fragaria_vesca	FvH4_7g15690 FvH4_7g15690
malus_domestica	MD01G1073600.v1.1
prunus_persica	Prupe.2G181700_v2.0.a1
pyrus_communis	pycom01g10280
rosa_chinensis	RchiOBHm_Chr1g0358421
rosa_laevigata	RLG00000027961
rosa_multiflora	Rmu_sc0041976.1_g000002 Rmu_ssc0000348.1_g000008
rosa_roxburghii	Rroxscaffold_4G00297950
rosa_rugosa	Rorug01G0261700 Rorug01G0261800
rosa_samantha	Rh1AG275900 Rh1BG242700 Rh1CG259700 Rh1DG271100
rosa_wichuraiana	Rw1G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	142
AccB1I	GGYRCC	1 cut(s)	142
AccI	GTMKAC	1 cut(s)	354
AccII	CGCG	1 cut(s)	215
AciI	CCGC	2 cut(s)	213, 569
AclWI	GGATC	2 cut(s)	312, 607
AcuI	CTGAAG	1 cut(s)	681
AcvI	CACGTG	1 cut(s)	860
AdeI	CACNNNGTG	1 cut(s)	33
AfaI	GTAC	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	591
AflIII	ACRYGT	2 cut(s)	27, 859
AgsI	TTSAA	5 cut(s)	56, 251, 362, 368, 674
AhdI	GACNNNNNGTC	1 cut(s)	658
AjiI	CACGTC	1 cut(s)	30
AjnI	CCWGG	2 cut(s)	336, 904
AluBI	AGCT	5 cut(s)	43, 275, 701, 800, 916
AluI	AGCT	5 cut(s)	43, 275, 701, 800, 916
Alw21I	GWGCWC	1 cut(s)	918
AlwI	GGATC	2 cut(s)	312, 607
Ama87I	CYCGRG	1 cut(s)	15
AoxI	GGCC	1 cut(s)	901
ApaI	GGGCCC	1 cut(s)	905
Asp700I	GAANNNNTTC	1 cut(s)	276
Asp718I	GGTACC	1 cut(s)	142
AspS9I	GGNCC	2 cut(s)	901, 902
AsuHPI	GGTGA	1 cut(s)	535
AvaI	CYCGRG	1 cut(s)	15
BaeGI	GKGCMC	1 cut(s)	905
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	2 cut(s)	905, 918
BbrPI	CACGTG	1 cut(s)	860
Bbv12I	GWGCWC	1 cut(s)	918
BccI	CCATC	4 cut(s)	215, 434, 456, 672
BcgI	CGANNNNNNTGC	4 cut(s)	402, 436, 820, 854
BciT130I	CCWGG	2 cut(s)	338, 906
BfaI	CTAG	3 cut(s)	173, 257, 509
BfmI	CTRYAG	1 cut(s)	732
BisI	GCNGC	2 cut(s)	213, 570
BlpI	GCTNAGC	1 cut(s)	912
BlsI	GCNGC	2 cut(s)	214, 571
Bme1390I	CCNGG	2 cut(s)	338, 906
BmeRI	GACNNNNNGTC	1 cut(s)	658
BmeT110I	CYCGRG	1 cut(s)	15
BmgBI	CACGTC	1 cut(s)	30
BmgT120I	GGNCC	2 cut(s)	901, 902
BmiI	GGNNCC	2 cut(s)	144, 903
BmrFI	CCNGG	2 cut(s)	338, 906
BmsI	GCATC	2 cut(s)	234, 766
Bpu1102I	GCTNAGC	1 cut(s)	912
BpuEI	CTTGAG	1 cut(s)	902
Bsa29I	ATCGAT	1 cut(s)	422
BsaAI	YACGTR	1 cut(s)	860
BsaBI	GATNNNNATC	1 cut(s)	428
BsaJI	CCNNGG	4 cut(s)	300, 585, 904, 905
Bsc4I	CCNNNNNNNGG	1 cut(s)	591
Bse3DI	GCAATG	1 cut(s)	824
Bse8I	GATNNNNATC	1 cut(s)	428
BseBI	CCWGG	2 cut(s)	338, 906
BseCI	ATCGAT	1 cut(s)	422
BseDI	CCNNGG	4 cut(s)	300, 585, 904, 905
BseGI	GGATG	1 cut(s)	355
BseJI	GATNNNNATC	1 cut(s)	428
BseLI	CCNNNNNNNGG	1 cut(s)	591
BseMI	GCAATG	1 cut(s)	824
BseMII	CTCAG	2 cut(s)	600, 903
BseSI	GKGCMC	1 cut(s)	905
Bsh1236I	CGCG	1 cut(s)	215
BshFI	GGCC	1 cut(s)	903
BshNI	GGYRCC	1 cut(s)	142
BshVI	ATCGAT	1 cut(s)	422
BsiHKAI	GWGCWC	1 cut(s)	918
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	157
BslFI	GGGAC	3 cut(s)	302, 576, 646
BslI	CCNNNNNNNGG	1 cut(s)	591
BsmFI	GGGAC	3 cut(s)	302, 576, 646
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	1 cut(s)	903
BsoBI	CYCGRG	1 cut(s)	15
Bsp120I	GGGCCC	1 cut(s)	901
Bsp1286I	GDGCHC	2 cut(s)	905, 918
Bsp143I	GATC	2 cut(s)	304, 612
Bsp1720I	GCTNAGC	1 cut(s)	912
Bsp19I	CCATGG	1 cut(s)	300
BspACI	CCGC	2 cut(s)	213, 569
BspANI	GGCC	1 cut(s)	903
BspCNI	CTCAG	2 cut(s)	601, 904
BspDI	ATCGAT	1 cut(s)	422
BspFNI	CGCG	1 cut(s)	215
BspLI	GGNNCC	2 cut(s)	144, 903
BspPI	GGATC	2 cut(s)	312, 607
BspT107I	GGYRCC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	824
BssECI	CCNNGG	4 cut(s)	300, 585, 904, 905
BssMI	GATC	2 cut(s)	304, 612
BssT1I	CCWWGG	2 cut(s)	300, 585
Bst2UI	CCWGG	2 cut(s)	338, 906
Bst4CI	ACNGT	3 cut(s)	553, 625, 634
BstBAI	YACGTR	1 cut(s)	860
BstC8I	GCNNGC	2 cut(s)	382, 802
BstDEI	CTNAG	2 cut(s)	609, 912
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	1 cut(s)	215
BstKTI	GATC	2 cut(s)	307, 615
BstMBI	GATC	2 cut(s)	304, 612
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNI	CCWGG	2 cut(s)	338, 906
BstNSI	RCATGY	2 cut(s)	101, 204
BstSCI	CCNGG	2 cut(s)	336, 904
BstSFI	CTRYAG	1 cut(s)	732
BstSLI	GKGCMC	1 cut(s)	905
BstUI	CGCG	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	612
BstXI	CCANNNNNNTGG	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	612
Bsu15I	ATCGAT	1 cut(s)	422
BsuRI	GGCC	1 cut(s)	903
BsuTUI	ATCGAT	1 cut(s)	422
BtgI	CCRYGG	1 cut(s)	300
BtrI	CACGTC	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	355
BtsIMutI	CAGTG	2 cut(s)	549, 621
Cac8I	GCNNGC	2 cut(s)	382, 802
Cfr13I	GGNCC	2 cut(s)	901, 902
ClaI	ATCGAT	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	143
CviQI	GTAC	1 cut(s)	143
DdeI	CTNAG	2 cut(s)	609, 912
DpnI	GATC	2 cut(s)	306, 614
DpnII	GATC	2 cut(s)	304, 612
DraIII	CACNNNGTG	1 cut(s)	33
DriI	GACNNNNNGTC	1 cut(s)	658
Eam1105I	GACNNNNNGTC	1 cut(s)	658
Ecl136II	GAGCTC	1 cut(s)	916
Eco130I	CCWWGG	2 cut(s)	300, 585
Eco24I	GRGCYC	2 cut(s)	905, 918
Eco53kI	GAGCTC	1 cut(s)	916
Eco57I	CTGAAG	1 cut(s)	681
Eco72I	CACGTG	1 cut(s)	860
Eco88I	CYCGRG	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	916
EcoO109I	RGGNCCY	1 cut(s)	902
EcoRII	CCWGG	2 cut(s)	336, 904
EcoT14I	CCWWGG	2 cut(s)	300, 585
EcoT22I	ATGCAT	2 cut(s)	206, 781
EcoT38I	GRGCYC	2 cut(s)	905, 918
ErhI	CCWWGG	2 cut(s)	300, 585
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FaqI	GGGAC	3 cut(s)	302, 576, 646
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	213, 570
FokI	GGATG	1 cut(s)	362
FriOI	GRGCYC	2 cut(s)	905, 918
Fsp4HI	GCNGC	2 cut(s)	213, 570
FspBI	CTAG	3 cut(s)	173, 257, 509
GluI	GCNGC	2 cut(s)	213, 570
HaeIII	GGCC	1 cut(s)	903
HapII	CCGG	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	798
HinfI	GANTC	6 cut(s)	419, 581, 642, 819, 832, 890
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	1 cut(s)	535
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	2 cut(s)	282, 868
Hpy188III	TCNNGA	1 cut(s)	15
Hpy8I	GTNNAC	1 cut(s)	355
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	3 cut(s)	86, 156, 778
HpyCH4III	ACNGT	3 cut(s)	553, 625, 634
HpyCH4IV	ACGT	2 cut(s)	29, 859
HpyCH4V	TGCA	8 cut(s)	24, 188, 204, 380, 413, 779, 857, 962
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	2 cut(s)	609, 912
HpySE526I	ACGT	2 cut(s)	29, 859
KpnI	GGTACC	1 cut(s)	146
Kzo9I	GATC	2 cut(s)	304, 612
LmnI	GCTCC	1 cut(s)	48
LpnPI	CCDG	8 cut(s)	170, 323, 327, 350, 472, 621, 891, 918
LweI	GCATC	2 cut(s)	234, 766
MaeI	CTAG	3 cut(s)	173, 257, 509
MaeII	ACGT	2 cut(s)	29, 859
MaeIII	GTNAC	5 cut(s)	62, 332, 443, 594, 928
MalI	GATC	2 cut(s)	306, 614
MboI	GATC	2 cut(s)	304, 612
MboII	GAAGA	2 cut(s)	263, 380
MfeI	CAATTG	1 cut(s)	308
MflI	RGATCY	1 cut(s)	612
MhlI	GDGCHC	2 cut(s)	905, 918
MluCI	AATT	2 cut(s)	308, 363
MlyI	GAGTC	3 cut(s)	575, 636, 884
MmeI	TCCRAC	2 cut(s)	327, 535
MnlI	CCTC	8 cut(s)	170, 276, 379, 535, 556, 677, 815, 855
Mph1103I	ATGCAT	2 cut(s)	206, 781
MroXI	GAANNNNTTC	1 cut(s)	276
MseI	TTAA	4 cut(s)	39, 267, 450, 647
MslI	CAYNNNNRTG	1 cut(s)	438
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	2 cut(s)	338, 906
MunI	CAATTG	1 cut(s)	308
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	2 cut(s)	338, 906
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	178
NcoI	CCATGG	1 cut(s)	300
NdeII	GATC	2 cut(s)	304, 612
NlaIV	GGNNCC	2 cut(s)	144, 903
NmuCI	GTSAC	1 cut(s)	928
NsiI	ATGCAT	2 cut(s)	206, 781
NspI	RCATGY	2 cut(s)	101, 204
PaeR7I	CTCGAG	1 cut(s)	15
PasI	CCCWGGG	1 cut(s)	905
PctI	GAATGC	1 cut(s)	688
PdmI	GAANNNNTTC	1 cut(s)	276
PfeI	GAWTC	3 cut(s)	419, 819, 832
PkrI	GCNGC	2 cut(s)	214, 571
PleI	GAGTC	3 cut(s)	575, 636, 884
PmaCI	CACGTG	1 cut(s)	860
PmlI	CACGTG	1 cut(s)	860
PpsI	GAGTC	3 cut(s)	575, 636, 884
Ppu21I	YACGTR	1 cut(s)	860
Psp124BI	GAGCTC	1 cut(s)	918
Psp6I	CCWGG	2 cut(s)	336, 904
PspCI	CACGTG	1 cut(s)	860
PspGI	CCWGG	2 cut(s)	336, 904
PspN4I	GGNNCC	2 cut(s)	144, 903
PspOMI	GGGCCC	1 cut(s)	901
PspPI	GGNCC	2 cut(s)	901, 902
PsuI	RGATCY	1 cut(s)	612
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
RseI	CAYNNNNRTG	1 cut(s)	438
SacI	GAGCTC	1 cut(s)	918
SaqAI	TTAA	4 cut(s)	39, 267, 450, 647
SatI	GCNGC	2 cut(s)	213, 570
Sau3AI	GATC	2 cut(s)	304, 612
Sau96I	GGNCC	2 cut(s)	901, 902
SchI	GAGTC	3 cut(s)	575, 636, 884
ScrFI	CCNGG	2 cut(s)	338, 906
SduI	GDGCHC	2 cut(s)	905, 918
SfaNI	GCATC	2 cut(s)	234, 766
SfcI	CTRYAG	1 cut(s)	732
Sfr274I	CTCGAG	1 cut(s)	15
SlaI	CTCGAG	1 cut(s)	15
SmiMI	CAYNNNNRTG	1 cut(s)	438
SmlI	CTYRAG	2 cut(s)	15, 917
SmoI	CTYRAG	2 cut(s)	15, 917
Sse9I	AATT	2 cut(s)	308, 363
SsiI	CCGC	2 cut(s)	213, 569
SspI	AATATT	1 cut(s)	163
SspMI	CTAG	3 cut(s)	173, 257, 509
SstI	GAGCTC	1 cut(s)	918
StyD4I	CCNGG	2 cut(s)	336, 904
StyI	CCWWGG	2 cut(s)	300, 585
TaaI	ACNGT	3 cut(s)	553, 625, 634
TaiI	ACGT	2 cut(s)	32, 862
TaqI	TCGA	4 cut(s)	16, 422, 438, 473
TasI	AATT	2 cut(s)	308, 363
TauI	GCSGC	2 cut(s)	215, 572
TfiI	GAWTC	3 cut(s)	419, 819, 832
Tru1I	TTAA	4 cut(s)	39, 267, 450, 647
Tru9I	TTAA	4 cut(s)	39, 267, 450, 647
TscAI	CASTG	2 cut(s)	556, 628
TseFI	GTSAC	1 cut(s)	928
Tsp45I	GTSAC	1 cut(s)	928
TspDTI	ATGAA	7 cut(s)	227, 285, 338, 440, 506, 510, 731
TspRI	CASTG	2 cut(s)	556, 628
XceI	RCATGY	2 cut(s)	101, 204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	556
XhoI	CTCGAG	1 cut(s)	15
XmiI	GTMKAC	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	3 cut(s)	173, 257, 509
Zsp2I	ATGCAT	2 cut(s)	206, 781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.