Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0013339

Physical Location & Seq

Genomic Coordinates Forward (+)

50422988 .. 50444852

Gene Structure 21865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG275900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3789 bp

ATGATGCCGATGTACAGATACATGGATTCACACCCCGAGCAAAAAAACCAGACCTTCTCTTTCCCTCAATATCCTTACCCGCCTCACCAACCAAACCCACCTATGGCATTTGTGCCTTGGCCTTATGGTGGCAACTTTGGCTACCCAAACCCCGTGCCGTGCTATTCTTGCTGTAACCATGGTAATGTTCCTGGTTATAATGGTTTCAGACCCTCCTACCCTCAAACTCCAATGCCATCACCAGTACATTTTGCGGGTGGTTATCCTGCTCCATATCATGAAGCCTACCCTGTTCAATATGTCCCGCCTCCTCATTACTCTATGGAGCTTCCTCGATATGATTATGACAAGAAGATGCCAGGAAATTACCACTGCTGTGGGTGTCCTAATCACAGCCACCAGAATAAGGGTGTGAAGATTGAAGAACAAGAATCACCGGATGTTGTCGAAAAGATGAATGACTCATTGGTTCCGGGTCAGATGACAAATTACCCTTATCCTTCTGTTTGGATTCCACCAGGAAACATGAAGGGTGAGGAGCAAAGGAAACTTTCTGGTCCGGAGATTGTAGAGCAAAAGAAGAATCCAGATGATCATGAAAGGCCTCTTGTGAGTTTGAAATCTCAGGAAGGAGATCAAAGGCGTGGTTTGTTACCTTTTGACATGGCCAATATTGGATCTTTGATGCAAGGTGGAAATGGGGAGCGGGTTCAGGATCAACGGAGTGAGGACAGAAAAAAGGAATTTTCATTTCCAATTTTTTGGATGCCCTCTTATGATGATACTAAGCGTGATGGAGCTGGAAAGAAGGACAAGGACATGGATGCATCTCAGGATCAGCAGACTGAAGAACGAATGAGGCAACTCCCATTCCCATTCTTCTGGCTCCCTCTTGAAAATAAACAGAAGGATGTTGGAATGGAGGAGGAGAAGAATGAGGAAAATAGGAAGGTTGATGCTAATCCAAGGATTGTTCCAGCGAAGCACGCTGAGAGTATTGACAATGGGACTGGAGTTAATGAAGATAAATCTGCTGGGCTGGGTGTTATAGACAGAAAGGGAAAAGATGCTAATCAGAGAGTCATACCAGTGAAGCAAATGGATCTACCTAAAAATGAGGACAACTCTGAAGACGCTAAGAGAAGAGGAAGGGAAGTCCCTGTGAAGCATGTGGATGACAATTTAGCTAACAAACCTTCTGGTATCACTGTTCAAAGCCAGTCCTCCTCCCCAAAGAAGTCATCTAGGCTACCTCCTGTTTGTCTGAGAGTCGATCCTTTGCCAAGTACGAAGAAGAATGGCGGTGGTAGTTCCAGATCTCCTAGTCCTCCTGGTCATAAAAAAGTTCAAAAAGAGACTTCAGCAGACACTTCCAAGGCCTCTGCTTCGTTTAGCTTGCCAGAGGACTCGCAACAAAATATGAAGCCCCACAATTCAAGCAATGGAAATGAGGTAGAGCCATTCAAGAAAGAGAAGGTTATTGATGTTATGGATAAGGGAATTGGCGAAAACAATGATTCAATGCATACATCTCAGATTCCTGTTAATTCCAAAGAGGTTTCCTCAAAGCCAACTGTTGGGGATGCCGGCAAAGATGGGAATCAATGTGAGGTCAATGAGGATCAAGGCACAGGAAAGATAGGAGAAACAGCAGCTCAGAATGTGGAAGAGACGAAGAAAACTTCGGGGTCAGTTAAATCAGTTGTTGAGGGAAGTAATTTTGAGAGAAAGATGTTATCCGATGTAGCAGCGGCTGTGCTTATTCAATCTGCCTACCGTGGATTCATGGTTAGGAGGTGGGAACCATTGAAGAAATTGAAGCAATTAGCTGAGATACGTGAGCAAGTCGCTGATATTCGGAATCAAATCATATCTTTGGAGACCTCTGATCTCAACAAAGACGATAAACAAAGAGTGGTAATCGGGGAAACCATCATGAGACTGCTTTTAAGACTGGATACCATTCAGGGTTTGCTTCCAAGTCTCAGAGACATAAGAAGATCCTTGGCAAGGGAGCTTGTATTTCTGCAGGAAAAGCTTGATGATATAATGTCTAAGAAATCCCAAAACACAACACAAGAGGTGTCCTCTGTTAAAACTGTGGAAGAGCTCAATGCCAATGGCAACAACAGTGTCTGCATGTCAGAGCAGCAAGCAGAGGAAGCAGCAAAAGATGGTGAAGAATTCCCTGCTGCTGCCAGCGATAACAGTCATGTTGCCACAGAGCCTTGCCAGGGGCAGGTGACACAAACCACGGATTCTCTCCCTGGCATGGAAGTCGAGGTACCAGAACTCTCTGAACATAAAGAGCTGGATATAGCATCTGAGAATGGACTGCATGAACTCCCTGAGGCTTGTGATCTGAATTCTAAAGGTCTTGATTCAGGACCTACAATGGAATGGAAATATAACATCGCTGATGGACAGCTTAGTGATGGACAGGCAGTGGTGGTGGATGCAGAAATGGCCAATGGTGCTACTGAGTTTGAGCAATGTGGTGAAGCTCCATCTCCTGTAGAGGACACGCCAGACCATAGTGTGATTTCAACTGCTTTAGAAGTTACAATAAGTCCAGAGTTGCCTCAAGTAGCAGTTAATACTGAGCCTGCTGCTTCAGAGCCTGAAAACGTTGAAGCATCAGAAATGAGCAAGGATGAAATGGAACAAGGTGGAGAGGTGGAATTGACCATGTCACCTGATATAACTTCTCCAATAGCCACTGATGATGCGACTGAGAAAGAAGTGGAGATGCATGAGTTTGCAGCTTGGCAACTAGGCACAACTGATGAAGACAGTGGTGCTGTTTCTGAATTGAAAAAGAACGAAGAAGTCCACATGGTGAAAGAAAACGATGTCTCAAAAAGTGGGGAAGAAGAAATAGTGGCTCTGCAACAAGAGGAGGGAACAGCGGAGGAGTTGACCAAGTTGGGAGGCCTAGTTGATGAGGAACACACAGGAGATAAGGTAATTGATCCAGAGGTCGAGCACCATCACCAAAACGAAGCTGCTATAGATGATCCTCTGCCAGTAGTCTCTCAAATGGTCGAATCCCAACCATTGCGCTTACCTGTTGAAACAAGCACTAGTGAAGTGGTGCATGAAAATAGGCCGTCAGACCTGATTGATGGTGTTGACGCTTGCTTGCCTACAGTGGTTGATGCTGACACGCCTAATGAGGATGAGGTTGAGAAAAGTAGAGAATCCTATAAAGACCTGCAAGCAGTAACCATAGAAGACGATACAGAGATGAAAGAGAACAAAGCTGAAAGCGAAGACAGCAAAGAGGATATCTTCACTGAGAAGAGTGAGCCACTGCCTGCAGATGCTGAAACTGCCAAAGAGGATGTCCTCACTGAGAAGAGTGAGCCATTGCCTGCAGATGCTGAAACTGCCAAAGAGGATGTCCTCACTGAGAAGAGTGAGTCATTGCCTGCAGATGCTGAAACTGCCAAAGAGGATGTCCTCACTGAGAAGAGTGAACCATTGCCTGCATCGCCAATCGCGACTGAGGTTTCCTCCGGTGATGGAAGCGTCGTGGGAGACGAAGGTGCTAGGAAGTTAATTAAAGAGAATGAGAAGCTAAGGGAAACGTTGCAGAAGTTGATGGTAGCAGGAAAAGACCAACTACAGGTGATCTCCGACCTCACCGGTAGAGTGAAAGATTTGGAGAAAAAGTTGGCTAAGAAGAAGAAATTAAGAACAAAAAGGTGTAGGGCTGCATCATCTCGGTCTTCTTGTGTCAAACCATCAAGCAATCACTTGAAGGAGAGGACTGGTGTTGCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005911 GO:0006457 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009791 GO:0009814 GO:0009817 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010035 GO:0010228 GO:0010506 GO:0010508 GO:0010941 GO:0010942 GO:0012502 GO:0019222 GO:0022414 GO:0030054 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0043067 GO:0043068 GO:0043207 GO:0044237 GO:0044248 GO:0045087 GO:0046677 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0061919 GO:0065007 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG IQ

Protein Analysis

1262

Amino Acids

139.29

Weight (kDa)

4.77

Isoelectric Point (pI)

56.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	610 - 682	1.4e-08	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46240
fragaria_vesca	FvH4_7g15690 FvH4_7g15690
malus_domestica	MD01G1073600.v1.1
prunus_persica	Prupe.2G181700_v2.0.a1
pyrus_communis	pycom01g10280
rosa_chinensis	RchiOBHm_Chr1g0358421
rosa_laevigata	RLG00000027961
rosa_multiflora	Rmu_sc0041976.1_g000002 Rmu_ssc0000348.1_g000008
rosa_roxburghii	Rroxscaffold_4G00297950
rosa_rugosa	Rorug01G0261700 Rorug01G0261800
rosa_samantha	Rh1AG275900 Rh1BG242700 Rh1CG259700 Rh1DG271100
rosa_wichuraiana	Rw1G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
AarI	CACCTGC	1 cut(s)	2230
Acc36I	ACCTGC	2 cut(s)	2230, 3222
Acc65I	GGTACC	1 cut(s)	2284
AccB1I	GGYRCC	1 cut(s)	2284
AccB7I	CCANNNNNTGG	1 cut(s)	1577
AccBSI	CCGCTC	1 cut(s)	706
AccII	CGCG	1 cut(s)	3503
AccIII	TCCGGA	1 cut(s)	559
AciI	CCGC	7 cut(s)	80, 254, 305, 706, 1302, 1751, 2909
AclI	AACGTT	2 cut(s)	2628, 3590
AclWI	GGATC	9 cut(s)	685, 723, 843, 1110, 1268, 1629, 1995, 2966, 3011
AcoI	YGGCCR	2 cut(s)	666, 2466
AcsI	RAATTY	3 cut(s)	743, 2183, 2365
AcuI	CTGAAG	4 cut(s)	867, 1149, 1344, 2598
AdeI	CACNNNGTG	1 cut(s)	2839
AfaI	GTAC	4 cut(s)	14, 246, 1288, 2286
AfiI	CCNNNNNNNGG	9 cut(s)	103, 128, 406, 1577, 2010, 2234, 2239, 2272, 3628
AgeI	ACCGGT	1 cut(s)	3647
AhlI	ACTAGT	1 cut(s)	3083
AjnI	CCWGG	6 cut(s)	190, 358, 517, 1330, 2232, 2266
AjuI	GAANNNNNNNTTGG	2 cut(s)	449, 481
AleI	CACNNNNGTG	1 cut(s)	375
Alw21I	GWGCWC	2 cut(s)	2112, 2988
Alw26I	GTCTC	9 cut(s)	1349, 1664, 1874, 1933, 1983, 1988, 2860, 3037, 3534
AlwI	GGATC	9 cut(s)	685, 723, 843, 1110, 1268, 1629, 1995, 2966, 3011
AlwNI	CAGNNNCTG	6 cut(s)	1754, 2136, 2621, 3326, 3383, 3440
Ama87I	CYCGRG	1 cut(s)	35
Aor13HI	TCCGGA	1 cut(s)	559
AoxI	GGCC	7 cut(s)	119, 602, 666, 1377, 2466, 2932, 3107
ApoI	RAATTY	3 cut(s)	743, 2183, 2365
ArsI	GACNNNNNNTTYG	6 cut(s)	3330, 3362, 3387, 3419, 3444, 3476
AsiGI	ACCGGT	1 cut(s)	3647
Asp718I	GGTACC	1 cut(s)	2284
AspLEI	GCGC	1 cut(s)	3063
AspS9I	GGNCC	2 cut(s)	557, 2387
AsuC2I	CCSGG	1 cut(s)	474
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	2 cut(s)	557, 2387
AxyI	CCTNAGG	1 cut(s)	2349
BalI	TGGCCA	2 cut(s)	668, 2468
BanI	GGYRCC	1 cut(s)	2284
BanII	GRGCYC	1 cut(s)	2112
BarI	GAAGNNNNNNTAC	2 cut(s)	2268, 2300
BbsI	GAAGAC	5 cut(s)	1137, 2796, 3240, 3279, 3723
Bbv12I	GWGCWC	2 cut(s)	2112, 2988
BceAI	ACGGC	2 cut(s)	142, 3094
BcgI	CGANNNNNNTGC	2 cut(s)	2260, 2294
BciT130I	CCWGG	6 cut(s)	192, 360, 519, 1332, 2234, 2268
BciVI	GTATCC	1 cut(s)	1951
BclI	TGATCA	1 cut(s)	592
BcnI	CCSGG	1 cut(s)	474
BcoDI	GTCTC	9 cut(s)	1349, 1664, 1874, 1933, 1983, 1988, 2860, 3037, 3534
BcuI	ACTAGT	1 cut(s)	3083
BfaI	CTAG	6 cut(s)	1245, 1323, 2774, 2936, 3084, 3552
BfmI	CTRYAG	8 cut(s)	2027, 2514, 3009, 3147, 3318, 3375, 3432, 3626
BfuAI	ACCTGC	2 cut(s)	2230, 3222
BfuI	GTATCC	1 cut(s)	1951
BglII	AGATCT	1 cut(s)	1316
Bme1390I	CCNGG	7 cut(s)	192, 360, 474, 519, 1332, 2234, 2268
Bme18I	GGWCC	2 cut(s)	557, 2387
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	557, 2387
BmiI	GGNNCC	4 cut(s)	471, 887, 1803, 2286
BmrFI	CCNGG	7 cut(s)	192, 360, 474, 519, 1332, 2234, 2268
BpiI	GAAGAC	5 cut(s)	1137, 2796, 3240, 3279, 3723
BplI	GAGNNNNNCTC	8 cut(s)	1109, 1141, 1547, 1579, 2072, 2104, 3500, 3532
BpmI	CTGGAG	1 cut(s)	1032
Bpu10I	CCTNAGC	1 cut(s)	3581
BpuEI	CTTGAG	1 cut(s)	2568
BpuMI	CCSGG	1 cut(s)	474
BsaAI	YACGTR	1 cut(s)	1838
BsaBI	GATNNNNATC	3 cut(s)	960, 1071, 1599
BsaI	GGTCTC	1 cut(s)	1874
BsaJI	CCNNGG	9 cut(s)	116, 178, 965, 1374, 1777, 2004, 2233, 2253, 2266
BsaWI	WCCGGW	4 cut(s)	436, 559, 3518, 3647
BsaXI	ACNNNNNCTCC	6 cut(s)	2922, 2949, 2952, 2979, 3659, 3689
Bsc4I	CCNNNNNNNGG	9 cut(s)	103, 128, 406, 1577, 2010, 2234, 2239, 2272, 3628
Bse118I	RCCGGY	2 cut(s)	1586, 3647
Bse1I	ACTGG	7 cut(s)	242, 1015, 1088, 1219, 1959, 3026, 3778
Bse21I	CCTNAGG	1 cut(s)	2349
Bse3DI	GCAATG	7 cut(s)	1447, 2498, 3056, 3368, 3425, 3482, 3789
Bse8I	GATNNNNATC	3 cut(s)	960, 1071, 1599
BseAI	TCCGGA	1 cut(s)	559
BseBI	CCWGG	6 cut(s)	192, 360, 519, 1332, 2234, 2268
BseDI	CCNNGG	9 cut(s)	116, 178, 965, 1374, 1777, 2004, 2233, 2253, 2266
BseJI	GATNNNNATC	3 cut(s)	960, 1071, 1599
BseLI	CCNNNNNNNGG	9 cut(s)	103, 128, 406, 1577, 2010, 2234, 2239, 2272, 3628
BseMI	GCAATG	7 cut(s)	1447, 2498, 3056, 3368, 3425, 3482, 3789
BseNI	ACTGG	7 cut(s)	242, 1015, 1088, 1219, 1959, 3026, 3778
BseRI	GAGGAG	7 cut(s)	300, 551, 938, 941, 1216, 2912, 2927
BseYI	CCCAGC	2 cut(s)	1034, 1039
Bsh1236I	CGCG	1 cut(s)	3503
BshFI	GGCC	7 cut(s)	121, 604, 668, 1379, 2468, 2934, 3109
BshNI	GGYRCC	1 cut(s)	2284
BshTI	ACCGGT	1 cut(s)	3647
BsiHKAI	GWGCWC	2 cut(s)	2112, 2988
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	6 cut(s)	437, 473, 560, 1587, 3519, 3648
BslFI	GGGAC	3 cut(s)	287, 1021, 1142
BslI	CCNNNNNNNGG	9 cut(s)	103, 128, 406, 1577, 2010, 2234, 2239, 2272, 3628
BsmAI	GTCTC	9 cut(s)	1349, 1664, 1874, 1933, 1983, 1988, 2860, 3037, 3534
BsmBI	CGTCTC	2 cut(s)	1664, 3534
BsmFI	GGGAC	3 cut(s)	287, 1021, 1142
BsnI	GGCC	7 cut(s)	121, 604, 668, 1379, 2468, 2934, 3109
Bso31I	GGTCTC	1 cut(s)	1874
BsoBI	CYCGRG	1 cut(s)	35
Bsp1286I	GDGCHC	2 cut(s)	2112, 2988
Bsp13I	TCCGGA	1 cut(s)	559
Bsp1407I	TGTACA	1 cut(s)	12
Bsp19I	CCATGG	1 cut(s)	178
Bsp68I	TCGCGA	1 cut(s)	3503
BspACI	CCGC	7 cut(s)	80, 254, 305, 706, 1302, 1751, 2909
BspANI	GGCC	7 cut(s)	121, 604, 668, 1379, 2468, 2934, 3109
BspEI	TCCGGA	1 cut(s)	559
BspFNI	CGCG	1 cut(s)	3503
BspHI	TCATGA	3 cut(s)	277, 595, 1935
BspLI	GGNNCC	4 cut(s)	471, 887, 1803, 2286
BspMAI	CTGCAG	4 cut(s)	2031, 3322, 3379, 3436
BspMI	ACCTGC	2 cut(s)	2230, 3222
BspPI	GGATC	9 cut(s)	685, 723, 843, 1110, 1268, 1629, 1995, 2966, 3011
BspQI	GCTCTTC	1 cut(s)	2100
BspT107I	GGYRCC	1 cut(s)	2284
BspTNI	GGTCTC	1 cut(s)	1874
BsrBI	CCGCTC	1 cut(s)	706
BsrDI	GCAATG	7 cut(s)	1447, 2498, 3056, 3368, 3425, 3482, 3789
BsrFI	RCCGGY	2 cut(s)	1586, 3647
BsrGI	TGTACA	1 cut(s)	12
BsrI	ACTGG	7 cut(s)	242, 1015, 1088, 1219, 1959, 3026, 3778
BssAI	RCCGGY	2 cut(s)	1586, 3647
BssECI	CCNNGG	9 cut(s)	116, 178, 965, 1374, 1777, 2004, 2233, 2253, 2266
BssT1I	CCWWGG	5 cut(s)	116, 178, 965, 1374, 2004
Bst2UI	CCWGG	6 cut(s)	192, 360, 519, 1332, 2234, 2268
Bst4CI	ACNGT	8 cut(s)	1210, 1576, 1778, 2101, 2132, 2210, 2795, 3151
Bst6I	CTCTTC	7 cut(s)	1138, 1662, 2100, 3296, 3353, 3410, 3467
BstAUI	TGTACA	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	1838
BstDSI	CCRYGG	3 cut(s)	178, 1777, 2253
BstENI	CCTNNNNNAGG	1 cut(s)	2008
BstFNI	CGCG	1 cut(s)	3503
BstHHI	GCGC	1 cut(s)	3063
BstMAI	GTCTC	9 cut(s)	1349, 1664, 1874, 1933, 1983, 1988, 2860, 3037, 3534
BstNI	CCWGG	6 cut(s)	192, 360, 519, 1332, 2234, 2268
BstNSI	RCATGY	2 cut(s)	1172, 2143
BstSCI	CCNGG	7 cut(s)	190, 358, 472, 517, 1330, 2232, 2266
BstSFI	CTRYAG	8 cut(s)	2027, 2514, 3009, 3147, 3318, 3375, 3432, 3626
BstUI	CGCG	1 cut(s)	3503
BstV2I	GAAGAC	5 cut(s)	1137, 2796, 3240, 3279, 3723
BstX2I	RGATCY	4 cut(s)	677, 1102, 1316, 2000
BstXI	CCANNNNNNTGG	3 cut(s)	377, 762, 882
BstYI	RGATCY	4 cut(s)	677, 1102, 1316, 2000
Bsu36I	CCTNAGG	1 cut(s)	2349
BsuI	GTATCC	1 cut(s)	1951
BsuRI	GGCC	7 cut(s)	121, 604, 668, 1379, 2468, 2934, 3109
BtgI	CCRYGG	3 cut(s)	178, 1777, 2253
BtgZI	GCGATG	2 cut(s)	2398, 3477
BtsI	GCAGTG	3 cut(s)	370, 2451, 3311
BtuMI	TCGCGA	1 cut(s)	3503
BveI	ACCTGC	2 cut(s)	2230, 3222
CaiI	CAGNNNCTG	6 cut(s)	1754, 2136, 2621, 3326, 3383, 3440
CciI	TCATGA	3 cut(s)	277, 595, 1935
CfoI	GCGC	1 cut(s)	3063
Cfr10I	RCCGGY	2 cut(s)	1586, 3647
Cfr13I	GGNCC	2 cut(s)	557, 2387
CseI	GACGC	3 cut(s)	1142, 3143, 3520
Csp6I	GTAC	4 cut(s)	13, 245, 1287, 2285
CspAI	ACCGGT	1 cut(s)	3647
CviQI	GTAC	4 cut(s)	13, 245, 1287, 2285
DraIII	CACNNNGTG	1 cut(s)	2839
EaeI	YGGCCR	2 cut(s)	666, 2466
Eam1104I	CTCTTC	7 cut(s)	1138, 1662, 2100, 3296, 3353, 3410, 3467
EarI	CTCTTC	7 cut(s)	1138, 1662, 2100, 3296, 3353, 3410, 3467
Ecl136II	GAGCTC	1 cut(s)	2110
Eco130I	CCWWGG	5 cut(s)	116, 178, 965, 1374, 2004
Eco147I	AGGCCT	3 cut(s)	604, 1379, 2934
Eco24I	GRGCYC	1 cut(s)	2112
Eco31I	GGTCTC	1 cut(s)	1874
Eco32I	GATATC	1 cut(s)	3289
Eco47I	GGWCC	2 cut(s)	557, 2387
Eco53kI	GAGCTC	1 cut(s)	2110
Eco57I	CTGAAG	4 cut(s)	867, 1149, 1344, 2598
Eco81I	CCTNAGG	1 cut(s)	2349
Eco88I	CYCGRG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	2110
EcoNI	CCTNNNNNAGG	1 cut(s)	2008
EcoO109I	RGGNCCY	1 cut(s)	2387
EcoRI	GAATTC	2 cut(s)	2183, 2365
EcoRII	CCWGG	6 cut(s)	190, 358, 517, 1330, 2232, 2266
EcoRV	GATATC	1 cut(s)	3289
EcoT14I	CCWWGG	5 cut(s)	116, 178, 965, 1374, 2004
EcoT22I	ATGCAT	3 cut(s)	829, 1527, 2754
EcoT38I	GRGCYC	1 cut(s)	2112
ErhI	CCWWGG	5 cut(s)	116, 178, 965, 1374, 2004
Esp3I	CGTCTC	2 cut(s)	1664, 3534
FaqI	GGGAC	3 cut(s)	287, 1021, 1142
FauI	CCCGC	4 cut(s)	87, 247, 312, 699
FbaI	TGATCA	1 cut(s)	592
FriOI	GRGCYC	1 cut(s)	2112
FspBI	CTAG	6 cut(s)	1245, 1323, 2774, 2936, 3084, 3552
GlaI	GCGC	1 cut(s)	3062
GsaI	CCCAGC	2 cut(s)	1038, 1043
GsuI	CTGGAG	1 cut(s)	1032
HaeIII	GGCC	7 cut(s)	121, 604, 668, 1379, 2468, 2934, 3109
HapII	CCGG	6 cut(s)	437, 473, 560, 1587, 3519, 3648
HgaI	GACGC	3 cut(s)	1142, 3143, 3520
HhaI	GCGC	1 cut(s)	3063
Hin6I	GCGC	1 cut(s)	3061
HinP1I	GCGC	1 cut(s)	3061
HincII	GTYRAC	2 cut(s)	2919, 3133
HindII	GTYRAC	2 cut(s)	2919, 3133
HindIII	AAGCTT	1 cut(s)	2036
HpaII	CCGG	6 cut(s)	437, 473, 560, 1587, 3519, 3648
Hpy166II	GTNNAC	4 cut(s)	2833, 2919, 3133, 3479
Hpy8I	GTNNAC	4 cut(s)	2833, 2919, 3133, 3479
Hpy99I	CGWCG	1 cut(s)	3536
HpyCH4III	ACNGT	8 cut(s)	1210, 1576, 1778, 2101, 2132, 2210, 2795, 3151
HpyCH4IV	ACGT	3 cut(s)	1837, 2628, 3590
HpySE526I	ACGT	3 cut(s)	1837, 2628, 3590
HspAI	GCGC	1 cut(s)	3061
Kpn2I	TCCGGA	1 cut(s)	559
KpnI	GGTACC	1 cut(s)	2288
KroI	GCCGGC	1 cut(s)	1586
KroNI	GCCGGC	1 cut(s)	1588
Ksp22I	TGATCA	1 cut(s)	592
LguI	GCTCTTC	1 cut(s)	2100
LmnI	GCTCC	8 cut(s)	274, 325, 538, 703, 797, 891, 2014, 2509
MaeI	CTAG	6 cut(s)	1245, 1323, 2774, 2936, 3084, 3552
MaeII	ACGT	3 cut(s)	1837, 2628, 3590
MaeIII	GTNAC	6 cut(s)	173, 651, 2242, 2560, 2691, 3223
MbiI	CCGCTC	1 cut(s)	706
MflI	RGATCY	4 cut(s)	677, 1102, 1316, 2000
MhlI	GDGCHC	2 cut(s)	2112, 2988
MlsI	TGGCCA	2 cut(s)	668, 2468
MluNI	TGGCCA	2 cut(s)	668, 2468
MlyI	GAGTC	5 cut(s)	455, 1089, 1278, 1400, 3431
MmeI	TCCRAC	2 cut(s)	895, 3663
Mox20I	TGGCCA	2 cut(s)	668, 2468
Mph1103I	ATGCAT	3 cut(s)	829, 1527, 2754
MroI	TCCGGA	1 cut(s)	559
MroNI	GCCGGC	1 cut(s)	1586
MscI	TGGCCA	2 cut(s)	668, 2468
MseI	TTAA	9 cut(s)	1017, 1545, 1695, 1949, 2094, 2595, 3560, 3564, 3695
MslI	CAYNNNNRTG	4 cut(s)	183, 375, 1088, 1173
Msp20I	TGGCCA	2 cut(s)	668, 2468
MspA1I	CMGCKG	2 cut(s)	1751, 2909
MspI	CCGG	6 cut(s)	437, 473, 560, 1587, 3519, 3648
MspR9I	CCNGG	7 cut(s)	192, 360, 474, 519, 1332, 2234, 2268
MvaI	CCWGG	6 cut(s)	192, 360, 519, 1332, 2234, 2268
MvnI	CGCG	1 cut(s)	3503
NaeI	GCCGGC	1 cut(s)	1588
NciI	CCSGG	1 cut(s)	474
NcoI	CCATGG	1 cut(s)	178
NgoMIV	GCCGGC	1 cut(s)	1586
NlaIV	GGNNCC	4 cut(s)	471, 887, 1803, 2286
NmuCI	GTSAC	2 cut(s)	2242, 2691
NruI	TCGCGA	1 cut(s)	3503
NsiI	ATGCAT	3 cut(s)	829, 1527, 2754
NspI	RCATGY	2 cut(s)	1172, 2143
OliI	CACNNNNGTG	1 cut(s)	375
PacI	TTAATTAA	1 cut(s)	3564
PagI	TCATGA	3 cut(s)	277, 595, 1935
PaqCI	CACCTGC	1 cut(s)	2230
PceI	AGGCCT	3 cut(s)	604, 1379, 2934
PciSI	GCTCTTC	1 cut(s)	2100
PcsI	WCGNNNNNNNCGW	2 cut(s)	3500, 3540
PdiI	GCCGGC	1 cut(s)	1588
PflFI	GACNNNGTC	1 cut(s)	2689
PflMI	CCANNNNNTGG	1 cut(s)	1577
PinAI	ACCGGT	1 cut(s)	3647
PleI	GAGTC	5 cut(s)	455, 1088, 1277, 1400, 3430
PpsI	GAGTC	5 cut(s)	455, 1088, 1277, 1400, 3430
Ppu21I	YACGTR	1 cut(s)	1838
PpuMI	RGGWCCY	1 cut(s)	2387
PsiI	TTATAA	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	2112
Psp1406I	AACGTT	2 cut(s)	2628, 3590
Psp5II	RGGWCCY	1 cut(s)	2387
Psp6I	CCWGG	6 cut(s)	190, 358, 517, 1330, 2232, 2266
PspFI	CCCAGC	2 cut(s)	1034, 1039
PspGI	CCWGG	6 cut(s)	190, 358, 517, 1330, 2232, 2266
PspN4I	GGNNCC	4 cut(s)	471, 887, 1803, 2286
PspPI	GGNCC	2 cut(s)	557, 2387
PspPPI	RGGWCCY	1 cut(s)	2387
PstI	CTGCAG	4 cut(s)	2031, 3322, 3379, 3436
PstNI	CAGNNNCTG	6 cut(s)	1754, 2136, 2621, 3326, 3383, 3440
PsuI	RGATCY	4 cut(s)	677, 1102, 1316, 2000
PsyI	GACNNNGTC	1 cut(s)	2689
RruI	TCGCGA	1 cut(s)	3503
RsaI	GTAC	4 cut(s)	14, 246, 1288, 2286
RsaNI	GTAC	4 cut(s)	13, 245, 1287, 2285
RseI	CAYNNNNRTG	4 cut(s)	183, 375, 1088, 1173
SacI	GAGCTC	1 cut(s)	2112
SapI	GCTCTTC	1 cut(s)	2100
SaqAI	TTAA	9 cut(s)	1017, 1545, 1695, 1949, 2094, 2595, 3560, 3564, 3695
Sau96I	GGNCC	2 cut(s)	557, 2387
SchI	GAGTC	5 cut(s)	455, 1089, 1278, 1400, 3431
ScrFI	CCNGG	7 cut(s)	192, 360, 474, 519, 1332, 2234, 2268
SduI	GDGCHC	2 cut(s)	2112, 2988
SfcI	CTRYAG	8 cut(s)	2027, 2514, 3009, 3147, 3318, 3375, 3432, 3626
SinI	GGWCC	2 cut(s)	557, 2387
SmiMI	CAYNNNNRTG	4 cut(s)	183, 375, 1088, 1173
SmlI	CTYRAG	1 cut(s)	2583
SmoI	CTYRAG	1 cut(s)	2583
SpeI	ACTAGT	1 cut(s)	3083
SseBI	AGGCCT	3 cut(s)	604, 1379, 2934
SsiI	CCGC	7 cut(s)	80, 254, 305, 706, 1302, 1751, 2909
SspI	AATATT	1 cut(s)	673
SspMI	CTAG	6 cut(s)	1245, 1323, 2774, 2936, 3084, 3552
SstI	GAGCTC	1 cut(s)	2112
StuI	AGGCCT	3 cut(s)	604, 1379, 2934
StyD4I	CCNGG	7 cut(s)	190, 358, 472, 517, 1330, 2232, 2266
StyI	CCWWGG	5 cut(s)	116, 178, 965, 1374, 2004
TaaI	ACNGT	8 cut(s)	1210, 1576, 1778, 2101, 2132, 2210, 2795, 3151
TaiI	ACGT	3 cut(s)	1840, 2631, 3593
TaqI	TCGA	6 cut(s)	334, 447, 1272, 2280, 2982, 3045
TaqII	GACCGA	1 cut(s)	3717
TatI	WGTACW	2 cut(s)	12, 244
TauI	GCSGC	1 cut(s)	1754
Tru1I	TTAA	9 cut(s)	1017, 1545, 1695, 1949, 2094, 2595, 3560, 3564, 3695
Tru9I	TTAA	9 cut(s)	1017, 1545, 1695, 1949, 2094, 2595, 3560, 3564, 3695
TseFI	GTSAC	2 cut(s)	2242, 2691
Tsp45I	GTSAC	2 cut(s)	2242, 2691
TspGWI	ACGGA	2 cut(s)	736, 2270
Tth111I	GACNNNGTC	1 cut(s)	2689
Van91I	CCANNNNNTGG	1 cut(s)	1577
VpaK11BI	GGWCC	2 cut(s)	557, 2387
XagI	CCTNNNNNAGG	1 cut(s)	2008
XapI	RAATTY	3 cut(s)	743, 2183, 2365
XceI	RCATGY	2 cut(s)	1172, 2143
XspI	CTAG	6 cut(s)	1245, 1323, 2774, 2936, 3084, 3552
Zsp2I	ATGCAT	3 cut(s)	829, 1527, 2754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.