Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0008155

Physical Location & Seq

Genomic Coordinates Reverse (-)

30920060 .. 30922027

Gene Structure 1968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1216200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGACAAACTCGGCGAAGCTGAACCGGACAATGGGACTCCAAAGGTCATCAACTTCCAATAAGCAGAAGGTGCAACCCATCACGAAAGTAGTTAAGAATGACGAGAACAGTGTCGATCTTTCCTTAGCATCAATCACCTCAAACTTGCATGATATCTCTACCCCTAATGGACCAATCTCCTCAGATTTAGCTTATAATTCATGGGTGGCCGAGCACCCTTCTGCATTAGGCTCATTTGATCGGATGATGAAAGCAGCAAAAGGGAAGCGGGTGGTTGTTTTCCTAGACTACGATGGGACCCTTTCACCAATTGTTGATGATCCTGATCGTGCCTTCATGTCTGATGAGATGCGTGCAGCAGTGCGGGAAGTTGCCAAGTATTTTCCAACGGCAGTAATTAGTGGAAGGAGTAGAGATAAGGTAATGAATAAGTCTAACATCAGTATGATCTCGAGCAAATTTGAGATATTCATCAATAAACAATGTGTTGCACATAAAATAATTTTCTCATTTAATTTGGTTCTACAGGTAAAAGAATTTGTACAGTTAAGTAATGTATATTATGCTGGAAGCCATGGGATGGATATATTGGTCCCAACAGGGCCACTAAATCCCTGTGATGCCAAGAACCACACTGCAGCCATTGATAAAAAGATACGAACACTGTTAGAGGAGATAACCAGGAAAGTAGAAGGTGCTAGGGTAGAGGACAACAGATTCTGCATTTCTGTTCATTTCCGCAAGGTCCGGGATGAGGATTATGACATATTAGAAGCAAAGGTGAAGTACGTACTTAAAAACTATCCCGAATTTCATCTCACCTTGGGCAAAAAGGTCTTGGAAGTACGGCCATCCATAGAATGGAACAAAGGTCATGCCCTAGAATATATACTTGACACTCTTGGATTCAGCAGTTCCAGTGACGTCCTCCCGCTGTACATTGGGGACGATCGGACTGATGAAGATGCTTTCAAGGTGATACGAAGTAGAGGACTAGGGTTTCCGATAATTGTGTCTTCAACCCCGAAGGATACCAAAGCTTGCTATTCCCTGCACGATCCGTCAGAAGTTTTAACTTTCTTGTTGCGGCTTGCAAGGTGGAGAAAAGAGTCTTCTTCTAGCAGGTCACTTGCTCAAATTTGGGGTCCTGGGAATTTACCTAGATCAGTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

392

Amino Acids

43.88

Weight (kDa)

9.11

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	94 - 148	2.5e-13	Trehalose-phosphatase
Trehalose_PPase	PF02358	167 - 355	2.3e-42	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31160 FvH4_7g31160 FvH4_7g31160 FvH4_7g31160 FvH4_7g31160
malus_domestica	MD01G1216200.v1.1 MD07G1286100.v1.1
prunus_persica	Prupe.2G308300_v2.0.a1 Prupe.2G308300_v2.0.a1 Prupe.2G308300_v2.0.a1 Prupe.2G308300_v2.0.a1
pyrus_communis	pycom01g22700 pycom07g25940
rosa_chinensis	RchiOBHm_Chr1g0380201
rosa_laevigata	RLG00000026320
rosa_multiflora	Rmu_sc0001232.1_g000023
rosa_roxburghii	Rroxscaffold_4G00279570
rosa_rugosa	Rorug01G0418900
rosa_samantha	Rh1AG443800 Rh1BG398800 Rh1CG412200 Rh1DG429400
rosa_wichuraiana	Rw1G038540 Rw1G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
AatII	GACGTC	1 cut(s)	927
Acc36I	ACCTGC	1 cut(s)	1113
AccB7I	CCANNNNNTGG	2 cut(s)	580, 861
AciI	CCGC	5 cut(s)	268, 364, 739, 932, 1087
AclWI	GGATC	2 cut(s)	314, 1052
AcoI	YGGCCR	2 cut(s)	207, 848
AcsI	RAATTY	5 cut(s)	458, 536, 809, 1137, 1153
AcyI	GRCGYC	1 cut(s)	924
AfaI	GTAC	5 cut(s)	543, 788, 792, 846, 938
AfiI	CCNNNNNNNGG	4 cut(s)	31, 580, 754, 861
AgsI	TTSAA	2 cut(s)	973, 1020
AjnI	CCWGG	2 cut(s)	680, 1147
AluBI	AGCT	3 cut(s)	19, 191, 1040
AluI	AGCT	3 cut(s)	19, 191, 1040
Alw21I	GWGCWC	1 cut(s)	216
AlwI	GGATC	2 cut(s)	314, 1052
AlwNI	CAGNNNCTG	1 cut(s)	720
Ama87I	CYCGRG	1 cut(s)	451
AoxI	GGCC	3 cut(s)	207, 602, 848
ApeKI	GCWGC	3 cut(s)	254, 356, 638
ApoI	RAATTY	5 cut(s)	458, 536, 809, 1137, 1153
ArsI	GACNNNNNNTTYG	2 cut(s)	1129, 1161
AspS9I	GGNCC	6 cut(s)	170, 297, 592, 602, 745, 1145
AsuC2I	CCSGG	1 cut(s)	749
AsuHPI	GGTGA	5 cut(s)	127, 297, 793, 811, 988
AvaI	CYCGRG	1 cut(s)	451
AvaII	GGWCC	5 cut(s)	170, 297, 592, 745, 1145
BbsI	GAAGAC	2 cut(s)	1008, 1104
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	3 cut(s)	266, 368, 650
BccI	CCATC	4 cut(s)	86, 287, 574, 859
BceAI	ACGGC	2 cut(s)	405, 863
BciT130I	CCWGG	2 cut(s)	682, 1149
BciVI	GTATCC	1 cut(s)	1024
BcnI	CCSGG	1 cut(s)	749
BfaI	CTAG	6 cut(s)	284, 699, 881, 995, 1119, 1161
BfmI	CTRYAG	2 cut(s)	524, 636
BfuAI	ACCTGC	1 cut(s)	1113
BfuI	GTATCC	1 cut(s)	1024
BisI	GCNGC	4 cut(s)	255, 357, 639, 1088
BlsI	GCNGC	4 cut(s)	256, 358, 640, 1089
Bme1390I	CCNGG	3 cut(s)	682, 749, 1149
Bme18I	GGWCC	5 cut(s)	170, 297, 592, 745, 1145
BmeT110I	CYCGRG	1 cut(s)	451
BmgT120I	GGNCC	6 cut(s)	170, 297, 592, 602, 745, 1145
BmiI	GGNNCC	4 cut(s)	298, 299, 594, 1146
BmrFI	CCNGG	3 cut(s)	682, 749, 1149
BmsI	GCATC	4 cut(s)	137, 339, 610, 955
BpiI	GAAGAC	2 cut(s)	1008, 1104
Bpu10I	CCTNAGC	1 cut(s)	124
BpuMI	CCSGG	1 cut(s)	749
BsaAI	YACGTR	1 cut(s)	790
BsaBI	GATNNNNATC	2 cut(s)	324, 470
BsaHI	GRCGYC	1 cut(s)	924
BsaJI	CCNNGG	3 cut(s)	574, 822, 1148
BsaWI	WCCGGW	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 580, 754, 861
Bse1I	ACTGG	1 cut(s)	918
Bse8I	GATNNNNATC	2 cut(s)	324, 470
BseBI	CCWGG	2 cut(s)	682, 1149
BseDI	CCNNGG	3 cut(s)	574, 822, 1148
BseGI	GGATG	4 cut(s)	249, 585, 757, 851
BseJI	GATNNNNATC	2 cut(s)	324, 470
BseLI	CCNNNNNNNGG	4 cut(s)	31, 580, 754, 861
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	918
BseRI	GAGGAG	2 cut(s)	169, 686
BseXI	GCAGC	3 cut(s)	266, 368, 650
BsgI	GTGCAG	2 cut(s)	375, 1037
Bsh1285I	CGRYCG	1 cut(s)	952
BshFI	GGCC	3 cut(s)	209, 604, 850
BsiEI	CGRYCG	1 cut(s)	952
BsiHKAI	GWGCWC	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	451
BsiSI	CCGG	2 cut(s)	25, 748
BslFI	GGGAC	4 cut(s)	48, 310, 578, 959
BslI	CCNNNNNNNGG	4 cut(s)	31, 580, 754, 861
BsmFI	GGGAC	4 cut(s)	48, 310, 578, 959
BsnI	GGCC	3 cut(s)	209, 604, 850
BsoBI	CYCGRG	1 cut(s)	451
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp1407I	TGTACA	2 cut(s)	541, 936
Bsp143I	GATC	8 cut(s)	115, 238, 319, 325, 447, 949, 1057, 1163
Bsp19I	CCATGG	1 cut(s)	574
BspACI	CCGC	5 cut(s)	268, 364, 739, 932, 1087
BspANI	GGCC	3 cut(s)	209, 604, 850
BspCNI	CTCAG	1 cut(s)	194
BspLI	GGNNCC	4 cut(s)	298, 299, 594, 1146
BspMAI	CTGCAG	1 cut(s)	640
BspMI	ACCTGC	1 cut(s)	1113
BspPI	GGATC	2 cut(s)	314, 1052
BsrGI	TGTACA	2 cut(s)	541, 936
BsrI	ACTGG	1 cut(s)	918
BssECI	CCNNGG	3 cut(s)	574, 822, 1148
BssMI	GATC	8 cut(s)	115, 238, 319, 325, 447, 949, 1057, 1163
BssNI	GRCGYC	1 cut(s)	924
BssT1I	CCWWGG	2 cut(s)	574, 822
Bst2UI	CCWGG	2 cut(s)	682, 1149
Bst4CI	ACNGT	3 cut(s)	110, 546, 666
BstACI	GRCGYC	1 cut(s)	924
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstAUI	TGTACA	2 cut(s)	541, 936
BstBAI	YACGTR	1 cut(s)	790
BstC8I	GCNNGC	3 cut(s)	354, 1042, 1092
BstDEI	CTNAG	2 cut(s)	124, 181
BstDSI	CCRYGG	1 cut(s)	574
BstF5I	GGATG	4 cut(s)	249, 585, 757, 851
BstKTI	GATC	8 cut(s)	118, 241, 322, 328, 450, 952, 1060, 1166
BstMBI	GATC	8 cut(s)	115, 238, 319, 325, 447, 949, 1057, 1163
BstMCI	CGRYCG	1 cut(s)	952
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	2 cut(s)	682, 1149
BstSCI	CCNGG	3 cut(s)	680, 747, 1147
BstSFI	CTRYAG	2 cut(s)	524, 636
BstSNI	TACGTA	1 cut(s)	790
BstV1I	GCAGC	3 cut(s)	266, 368, 650
BstV2I	GAAGAC	2 cut(s)	1008, 1104
BsuI	GTATCC	1 cut(s)	1024
BsuRI	GGCC	3 cut(s)	209, 604, 850
BtgI	CCRYGG	1 cut(s)	574
BtsCI	GGATG	4 cut(s)	249, 585, 757, 851
BtsI	GCAGTG	2 cut(s)	366, 633
BtsIMutI	CAGTG	5 cut(s)	115, 366, 633, 662, 925
BveI	ACCTGC	1 cut(s)	1113
Cac8I	GCNNGC	3 cut(s)	354, 1042, 1092
CaiI	CAGNNNCTG	1 cut(s)	720
Cfr13I	GGNCC	6 cut(s)	170, 297, 592, 602, 745, 1145
Csp6I	GTAC	5 cut(s)	542, 787, 791, 845, 937
CviAII	CATG	5 cut(s)	149, 201, 337, 575, 875
CviQI	GTAC	5 cut(s)	542, 787, 791, 845, 937
DdeI	CTNAG	2 cut(s)	124, 181
DpnI	GATC	8 cut(s)	117, 240, 321, 327, 449, 951, 1059, 1165
DpnII	GATC	8 cut(s)	115, 238, 319, 325, 447, 949, 1057, 1163
EaeI	YGGCCR	2 cut(s)	207, 848
Eco105I	TACGTA	1 cut(s)	790
Eco130I	CCWWGG	2 cut(s)	574, 822
Eco32I	GATATC	1 cut(s)	154
Eco47I	GGWCC	5 cut(s)	170, 297, 592, 745, 1145
Eco88I	CYCGRG	1 cut(s)	451
EcoO109I	RGGNCCY	2 cut(s)	297, 1145
EcoRII	CCWGG	2 cut(s)	680, 1147
EcoRV	GATATC	1 cut(s)	154
EcoT14I	CCWWGG	2 cut(s)	574, 822
ErhI	CCWWGG	2 cut(s)	574, 822
FaeI	CATG	5 cut(s)	152, 204, 340, 578, 878
FaqI	GGGAC	4 cut(s)	48, 310, 578, 959
FatI	CATG	5 cut(s)	148, 200, 336, 574, 874
FauI	CCCGC	3 cut(s)	261, 357, 939
Fnu4HI	GCNGC	4 cut(s)	255, 357, 639, 1088
FokI	GGATG	4 cut(s)	256, 592, 764, 838
Fsp4HI	GCNGC	4 cut(s)	255, 357, 639, 1088
FspBI	CTAG	6 cut(s)	284, 699, 881, 995, 1119, 1161
GluI	GCNGC	4 cut(s)	255, 357, 639, 1088
HaeIII	GGCC	3 cut(s)	209, 604, 850
HapII	CCGG	2 cut(s)	25, 748
Hin1I	GRCGYC	1 cut(s)	924
Hin1II	CATG	5 cut(s)	152, 204, 340, 578, 878
HindIII	AAGCTT	1 cut(s)	1038
HinfI	GANTC	4 cut(s)	36, 717, 906, 1109
HpaII	CCGG	2 cut(s)	25, 748
HphI	GGTGA	5 cut(s)	127, 297, 793, 811, 988
Hpy188I	TCNGA	6 cut(s)	184, 243, 343, 954, 1005, 1066
Hpy188III	TCNNGA	4 cut(s)	82, 323, 451, 806
HpyAV	CCTTC	6 cut(s)	61, 228, 343, 399, 686, 1021
HpyCH4III	ACNGT	3 cut(s)	110, 546, 666
HpyCH4IV	ACGT	2 cut(s)	789, 924
HpyCH4V	TGCA	9 cut(s)	73, 148, 224, 356, 491, 638, 723, 1054, 1094
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	2 cut(s)	124, 181
HpySE526I	ACGT	2 cut(s)	789, 924
Hsp92I	GRCGYC	1 cut(s)	924
Hsp92II	CATG	5 cut(s)	152, 204, 340, 578, 878
KflI	GGGWCCC	1 cut(s)	297
Kzo9I	GATC	8 cut(s)	115, 238, 319, 325, 447, 949, 1057, 1163
Lsp1109I	GCAGC	3 cut(s)	266, 368, 650
LweI	GCATC	4 cut(s)	137, 339, 610, 955
MaeI	CTAG	6 cut(s)	284, 699, 881, 995, 1119, 1161
MaeII	ACGT	2 cut(s)	789, 924
MaeIII	GTNAC	2 cut(s)	920, 1125
MalI	GATC	8 cut(s)	117, 240, 321, 327, 449, 951, 1059, 1165
MboI	GATC	8 cut(s)	115, 238, 319, 325, 447, 949, 1057, 1163
MboII	GAAGA	4 cut(s)	974, 1008, 1104, 1107
MfeI	CAATTG	1 cut(s)	309
MhlI	GDGCHC	1 cut(s)	216
MlyI	GAGTC	2 cut(s)	30, 1118
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	7 cut(s)	148, 190, 664, 700, 748, 938, 983
MseI	TTAA	6 cut(s)	93, 513, 548, 795, 1073, 1174
MslI	CAYNNNNRTG	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	934
MspI	CCGG	2 cut(s)	25, 748
MspR9I	CCNGG	3 cut(s)	682, 749, 1149
MunI	CAATTG	1 cut(s)	309
MvaI	CCWGG	2 cut(s)	682, 1149
MwoI	GCNNNNNNNGC	1 cut(s)	70
NciI	CCSGG	1 cut(s)	749
NcoI	CCATGG	1 cut(s)	574
NdeII	GATC	8 cut(s)	115, 238, 319, 325, 447, 949, 1057, 1163
NlaIII	CATG	5 cut(s)	152, 204, 340, 578, 878
NlaIV	GGNNCC	4 cut(s)	298, 299, 594, 1146
NmeAIII	GCCGAG	1 cut(s)	235
NmuCI	GTSAC	2 cut(s)	920, 1125
PaeR7I	CTCGAG	1 cut(s)	451
PfeI	GAWTC	2 cut(s)	717, 906
PflMI	CCANNNNNTGG	2 cut(s)	580, 861
PfoI	TCCNGGA	1 cut(s)	747
PkrI	GCNGC	4 cut(s)	256, 358, 640, 1089
Ple19I	CGATCG	1 cut(s)	952
PleI	GAGTC	2 cut(s)	30, 1117
PpsI	GAGTC	2 cut(s)	30, 1117
Ppu21I	YACGTR	1 cut(s)	790
PpuMI	RGGWCCY	2 cut(s)	297, 1145
PsiI	TTATAA	1 cut(s)	195
Psp5II	RGGWCCY	2 cut(s)	297, 1145
Psp6I	CCWGG	2 cut(s)	680, 1147
PspGI	CCWGG	2 cut(s)	680, 1147
PspN4I	GGNNCC	4 cut(s)	298, 299, 594, 1146
PspPI	GGNCC	6 cut(s)	170, 297, 592, 602, 745, 1145
PspPPI	RGGWCCY	2 cut(s)	297, 1145
PstI	CTGCAG	1 cut(s)	640
PstNI	CAGNNNCTG	1 cut(s)	720
PvuI	CGATCG	1 cut(s)	952
RsaI	GTAC	5 cut(s)	543, 788, 792, 846, 938
RsaNI	GTAC	5 cut(s)	542, 787, 791, 845, 937
RseI	CAYNNNNRTG	1 cut(s)	443
SaqAI	TTAA	6 cut(s)	93, 513, 548, 795, 1073, 1174
SatI	GCNGC	4 cut(s)	255, 357, 639, 1088
Sau3AI	GATC	8 cut(s)	115, 238, 319, 325, 447, 949, 1057, 1163
Sau96I	GGNCC	6 cut(s)	170, 297, 592, 602, 745, 1145
SchI	GAGTC	2 cut(s)	30, 1118
ScrFI	CCNGG	3 cut(s)	682, 749, 1149
SduI	GDGCHC	1 cut(s)	216
SfaNI	GCATC	4 cut(s)	137, 339, 610, 955
SfcI	CTRYAG	2 cut(s)	524, 636
Sfr274I	CTCGAG	1 cut(s)	451
SinI	GGWCC	5 cut(s)	170, 297, 592, 745, 1145
SlaI	CTCGAG	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
SnaBI	TACGTA	1 cut(s)	790
SsiI	CCGC	5 cut(s)	268, 364, 739, 932, 1087
SspMI	CTAG	6 cut(s)	284, 699, 881, 995, 1119, 1161
StyD4I	CCNGG	3 cut(s)	680, 747, 1147
StyI	CCWWGG	2 cut(s)	574, 822
TaaI	ACNGT	3 cut(s)	110, 546, 666
TaiI	ACGT	2 cut(s)	792, 927
TaqI	TCGA	2 cut(s)	114, 452
TatI	WGTACW	2 cut(s)	541, 936
TauI	GCSGC	1 cut(s)	1090
TfiI	GAWTC	2 cut(s)	717, 906
Tru1I	TTAA	6 cut(s)	93, 513, 548, 795, 1073, 1174
Tru9I	TTAA	6 cut(s)	93, 513, 548, 795, 1073, 1174
TscAI	CASTG	5 cut(s)	115, 366, 640, 669, 925
TseFI	GTSAC	2 cut(s)	920, 1125
TseI	GCWGC	3 cut(s)	254, 356, 638
Tsp45I	GTSAC	2 cut(s)	920, 1125
TspDTI	ATGAA	8 cut(s)	189, 263, 325, 440, 460, 722, 803, 975
TspGWI	ACGGA	1 cut(s)	1050
TspRI	CASTG	5 cut(s)	115, 366, 640, 669, 925
Van91I	CCANNNNNTGG	2 cut(s)	580, 861
VpaK11BI	GGWCC	5 cut(s)	170, 297, 592, 745, 1145
XapI	RAATTY	5 cut(s)	458, 536, 809, 1137, 1153
XcmI	CCANNNNNNNNNTGG	1 cut(s)	858
XhoI	CTCGAG	1 cut(s)	451
XspI	CTAG	6 cut(s)	284, 699, 881, 995, 1119, 1161
ZraI	GACGTC	1 cut(s)	925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.