Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008155

Physical Location & Seq

Genomic Coordinates Reverse (-)

20194184 .. 20196802

Gene Structure 2619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g22700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGGACCCTTTCACCAATTGTTGATGATCGATCGTGCCTTCATGTCTGATGAGATGCGCGCAGCAGTACGGGAAGTTGCCAAGTATTTTCCAACGGCAGTAATTAGTGGAAGGAGTAGAGATAAGGTAAAAGAATTTGTGCAGTTAAGTAATGTATATTATGCTGGAAGCCATGGGATGGATATATTGGTCCCAACAGGGCCACTAAATCCCTGTGATGCCAAGAACCACACAGCAGCCATTGATAAAAAGGAGAGTGACGTTCTCTTTCAACCTGCTAAAAGATTTCTGCCTGCAATCCAAGAGATACGAACACTGTTAGAGGAGCTAACCAGGAAAGTAGAAGGTGCTAGGGTAGAGGACAACAGATTCTGCATTTCTGTTCATTTCCGCAAGGTCCGGGATGAGGATTATGGCATATTAGAAGCAAAGGTGAAGTACGTACTTGAAAACTATCCTGAATTTCATCTCACCTTGGGCAAAAAGGTCTTGGAAGTACGGCCATCCATAGAATGGAACAAAGGTCATGCCTTAGAATATATACTTGACACTCTTGGATTCAGCAGTTCCAGTGACGTCCTCCCGTTGTACATTGGGGACGACCGGACTGATGAAGATGCTTTCAAGATGATACGAAGTAGAGGACTAGGGTTTCCGATAATTGTGTCTTCAACCCCGAAGGATACCAAAGCTTGCTATTCCCTGCACGATCCGTCAGATGTTTTAACTTTCTTGTTGCGGCTTGCAAGGTGGAGAAAAGCGTCTTCTTCTAGCAGGTCACTTGCTCAAATTTGGGGTCCTGGAAATTTACCTAGATCAGTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

276

Amino Acids

31.16

Weight (kDa)

8.64

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31160 FvH4_7g31160 FvH4_7g31160 FvH4_7g31160 FvH4_7g31160
malus_domestica	MD01G1216200.v1.1 MD07G1286100.v1.1
prunus_persica	Prupe.2G308300_v2.0.a1 Prupe.2G308300_v2.0.a1 Prupe.2G308300_v2.0.a1 Prupe.2G308300_v2.0.a1
pyrus_communis	pycom01g22700 pycom07g25940
rosa_chinensis	RchiOBHm_Chr1g0380201
rosa_laevigata	RLG00000026320
rosa_multiflora	Rmu_sc0001232.1_g000023
rosa_roxburghii	Rroxscaffold_4G00279570
rosa_rugosa	Rorug01G0418900
rosa_samantha	Rh1AG443800 Rh1BG398800 Rh1CG412200 Rh1DG429400
rosa_wichuraiana	Rw1G038540 Rw1G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	579
Acc36I	ACCTGC	2 cut(s)	283, 765
AccB7I	CCANNNNNTGG	2 cut(s)	178, 513
AccII	CGCG	1 cut(s)	60
AciI	CCGC	2 cut(s)	391, 739
AclWI	GGATC	1 cut(s)	704
AcoI	YGGCCR	1 cut(s)	500
AcsI	RAATTY	4 cut(s)	134, 461, 789, 805
AcyI	GRCGYC	1 cut(s)	576
AfaI	GTAC	5 cut(s)	69, 440, 444, 498, 590
AfiI	CCNNNNNNNGG	3 cut(s)	178, 406, 513
AgsI	TTSAA	4 cut(s)	272, 449, 625, 672
AjnI	CCWGG	2 cut(s)	332, 799
AluBI	AGCT	2 cut(s)	328, 692
AluI	AGCT	2 cut(s)	328, 692
AlwI	GGATC	1 cut(s)	704
AlwNI	CAGNNNCTG	1 cut(s)	372
AoxI	GGCC	2 cut(s)	200, 500
ApeKI	GCWGC	2 cut(s)	62, 236
ApoI	RAATTY	4 cut(s)	134, 461, 789, 805
ArsI	GACNNNNNNTTYG	2 cut(s)	781, 813
AspLEI	GCGC	2 cut(s)	60, 62
AspS9I	GGNCC	5 cut(s)	5, 190, 200, 397, 797
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	3 cut(s)	5, 445, 463
AvaII	GGWCC	4 cut(s)	5, 190, 397, 797
BbsI	GAAGAC	2 cut(s)	660, 756
BbvI	GCAGC	2 cut(s)	74, 248
BccI	CCATC	2 cut(s)	172, 511
BceAI	ACGGC	2 cut(s)	111, 515
BciT130I	CCWGG	2 cut(s)	334, 801
BciVI	GTATCC	1 cut(s)	676
BcnI	CCSGG	1 cut(s)	401
BfaI	CTAG	4 cut(s)	351, 647, 771, 813
BfuAI	ACCTGC	2 cut(s)	283, 765
BfuI	GTATCC	1 cut(s)	676
BisI	GCNGC	3 cut(s)	63, 237, 740
BlsI	GCNGC	3 cut(s)	64, 238, 741
Bme1390I	CCNGG	3 cut(s)	334, 401, 801
Bme18I	GGWCC	4 cut(s)	5, 190, 397, 797
BmgT120I	GGNCC	5 cut(s)	5, 190, 200, 397, 797
BmiI	GGNNCC	4 cut(s)	6, 7, 192, 798
BmrFI	CCNGG	3 cut(s)	334, 401, 801
BmsI	GCATC	3 cut(s)	45, 208, 607
BpiI	GAAGAC	2 cut(s)	660, 756
BpuMI	CCSGG	1 cut(s)	401
Bsa29I	ATCGAT	1 cut(s)	30
BsaAI	YACGTR	1 cut(s)	442
BsaHI	GRCGYC	1 cut(s)	576
BsaJI	CCNNGG	2 cut(s)	172, 474
BsaWI	WCCGGW	1 cut(s)	603
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 406, 513
Bse1I	ACTGG	1 cut(s)	570
BseBI	CCWGG	2 cut(s)	334, 801
BseCI	ATCGAT	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	172, 474
BseGI	GGATG	3 cut(s)	183, 409, 503
BseLI	CCNNNNNNNGG	3 cut(s)	178, 406, 513
BseNI	ACTGG	1 cut(s)	570
BsePI	GCGCGC	1 cut(s)	58
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	74, 248
BsgI	GTGCAG	2 cut(s)	161, 689
Bsh1236I	CGCG	1 cut(s)	60
Bsh1285I	CGRYCG	2 cut(s)	34, 604
BshFI	GGCC	2 cut(s)	202, 502
BshVI	ATCGAT	1 cut(s)	30
BsiEI	CGRYCG	2 cut(s)	34, 604
BsiSI	CCGG	2 cut(s)	400, 604
BslFI	GGGAC	3 cut(s)	18, 176, 611
BslI	CCNNNNNNNGG	3 cut(s)	178, 406, 513
BsmFI	GGGAC	3 cut(s)	18, 176, 611
BsnI	GGCC	2 cut(s)	202, 502
Bsp1407I	TGTACA	1 cut(s)	588
Bsp143I	GATC	4 cut(s)	27, 31, 709, 815
Bsp19I	CCATGG	1 cut(s)	172
BspACI	CCGC	2 cut(s)	391, 739
BspANI	GGCC	2 cut(s)	202, 502
BspDI	ATCGAT	1 cut(s)	30
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	4 cut(s)	6, 7, 192, 798
BspMI	ACCTGC	2 cut(s)	283, 765
BspPI	GGATC	1 cut(s)	704
BsrGI	TGTACA	1 cut(s)	588
BsrI	ACTGG	1 cut(s)	570
BssECI	CCNNGG	2 cut(s)	172, 474
BssHII	GCGCGC	1 cut(s)	58
BssMI	GATC	4 cut(s)	27, 31, 709, 815
BssNI	GRCGYC	1 cut(s)	576
BssT1I	CCWWGG	2 cut(s)	172, 474
Bst2UI	CCWGG	2 cut(s)	334, 801
Bst4CI	ACNGT	1 cut(s)	318
BstACI	GRCGYC	1 cut(s)	576
BstAUI	TGTACA	1 cut(s)	588
BstBAI	YACGTR	1 cut(s)	442
BstC8I	GCNNGC	4 cut(s)	60, 294, 694, 744
BstDEI	CTNAG	1 cut(s)	532
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	3 cut(s)	183, 409, 503
BstFNI	CGCG	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	60, 62
BstKTI	GATC	4 cut(s)	30, 34, 712, 818
BstMBI	GATC	4 cut(s)	27, 31, 709, 815
BstMCI	CGRYCG	2 cut(s)	34, 604
BstNI	CCWGG	2 cut(s)	334, 801
BstSCI	CCNGG	3 cut(s)	332, 399, 799
BstSNI	TACGTA	1 cut(s)	442
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	74, 248
BstV2I	GAAGAC	2 cut(s)	660, 756
Bsu15I	ATCGAT	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	676
BsuRI	GGCC	2 cut(s)	202, 502
BsuTUI	ATCGAT	1 cut(s)	30
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	3 cut(s)	183, 409, 503
BtsIMutI	CAGTG	2 cut(s)	314, 577
BveI	ACCTGC	2 cut(s)	283, 765
Cac8I	GCNNGC	4 cut(s)	60, 294, 694, 744
CaiI	CAGNNNCTG	1 cut(s)	372
CfoI	GCGC	2 cut(s)	60, 62
Cfr13I	GGNCC	5 cut(s)	5, 190, 200, 397, 797
ClaI	ATCGAT	1 cut(s)	30
CseI	GACGC	1 cut(s)	750
Csp6I	GTAC	5 cut(s)	68, 439, 443, 497, 589
CviAII	CATG	3 cut(s)	43, 173, 527
CviJI	RGCY	7 cut(s)	171, 202, 239, 328, 502, 692, 742
CviKI_1	RGCY	7 cut(s)	171, 202, 239, 328, 502, 692, 742
CviQI	GTAC	5 cut(s)	68, 439, 443, 497, 589
DdeI	CTNAG	1 cut(s)	532
DpnI	GATC	4 cut(s)	29, 33, 711, 817
DpnII	GATC	4 cut(s)	27, 31, 709, 815
EaeI	YGGCCR	1 cut(s)	500
Eco105I	TACGTA	1 cut(s)	442
Eco130I	CCWWGG	2 cut(s)	172, 474
Eco47I	GGWCC	4 cut(s)	5, 190, 397, 797
EcoO109I	RGGNCCY	2 cut(s)	5, 797
EcoRII	CCWGG	2 cut(s)	332, 799
EcoT14I	CCWWGG	2 cut(s)	172, 474
ErhI	CCWWGG	2 cut(s)	172, 474
FaeI	CATG	3 cut(s)	46, 176, 530
FaqI	GGGAC	3 cut(s)	18, 176, 611
FatI	CATG	3 cut(s)	42, 172, 526
Fnu4HI	GCNGC	3 cut(s)	63, 237, 740
FokI	GGATG	3 cut(s)	190, 416, 490
Fsp4HI	GCNGC	3 cut(s)	63, 237, 740
FspBI	CTAG	4 cut(s)	351, 647, 771, 813
GlaI	GCGC	2 cut(s)	59, 61
GluI	GCNGC	3 cut(s)	63, 237, 740
HaeIII	GGCC	2 cut(s)	202, 502
HapII	CCGG	2 cut(s)	400, 604
HgaI	GACGC	1 cut(s)	750
HhaI	GCGC	2 cut(s)	60, 62
Hin1I	GRCGYC	1 cut(s)	576
Hin1II	CATG	3 cut(s)	46, 176, 530
Hin6I	GCGC	2 cut(s)	58, 60
HinP1I	GCGC	2 cut(s)	58, 60
HindIII	AAGCTT	1 cut(s)	690
HinfI	GANTC	2 cut(s)	369, 558
HpaII	CCGG	2 cut(s)	400, 604
HphI	GGTGA	3 cut(s)	5, 445, 463
Hpy188I	TCNGA	3 cut(s)	49, 657, 718
Hpy188III	TCNNGA	2 cut(s)	458, 625
HpyAV	CCTTC	4 cut(s)	49, 105, 338, 673
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4IV	ACGT	3 cut(s)	261, 441, 576
HpyCH4V	TGCA	5 cut(s)	142, 296, 375, 706, 746
HpyF3I	CTNAG	1 cut(s)	532
HpySE526I	ACGT	3 cut(s)	261, 441, 576
Hsp92I	GRCGYC	1 cut(s)	576
Hsp92II	CATG	3 cut(s)	46, 176, 530
HspAI	GCGC	2 cut(s)	58, 60
KflI	GGGWCCC	1 cut(s)	5
Kzo9I	GATC	4 cut(s)	27, 31, 709, 815
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	2 cut(s)	74, 248
LweI	GCATC	3 cut(s)	45, 208, 607
MaeI	CTAG	4 cut(s)	351, 647, 771, 813
MaeII	ACGT	3 cut(s)	261, 441, 576
MaeIII	GTNAC	3 cut(s)	257, 572, 777
MalI	GATC	4 cut(s)	29, 33, 711, 817
MboI	GATC	4 cut(s)	27, 31, 709, 815
MboII	GAAGA	4 cut(s)	626, 660, 756, 759
MfeI	CAATTG	1 cut(s)	17
MluCI	AATT	8 cut(s)	17, 102, 134, 461, 660, 789, 805, 823
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	5 cut(s)	316, 352, 400, 590, 635
MseI	TTAA	4 cut(s)	146, 725, 822, 826
MspI	CCGG	2 cut(s)	400, 604
MspR9I	CCNGG	3 cut(s)	334, 401, 801
MunI	CAATTG	1 cut(s)	17
MvaI	CCWGG	2 cut(s)	334, 801
MvnI	CGCG	1 cut(s)	60
NciI	CCSGG	1 cut(s)	401
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	4 cut(s)	27, 31, 709, 815
NlaIII	CATG	3 cut(s)	46, 176, 530
NlaIV	GGNNCC	4 cut(s)	6, 7, 192, 798
NmuCI	GTSAC	3 cut(s)	257, 572, 777
PacI	TTAATTAA	1 cut(s)	826
PauI	GCGCGC	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	369, 558
PflMI	CCANNNNNTGG	2 cut(s)	178, 513
PfoI	TCCNGGA	2 cut(s)	399, 799
PkrI	GCNGC	3 cut(s)	64, 238, 741
Ple19I	CGATCG	1 cut(s)	34
Ppu21I	YACGTR	1 cut(s)	442
PpuMI	RGGWCCY	2 cut(s)	5, 797
Psp5II	RGGWCCY	2 cut(s)	5, 797
Psp6I	CCWGG	2 cut(s)	332, 799
PspGI	CCWGG	2 cut(s)	332, 799
PspN4I	GGNNCC	4 cut(s)	6, 7, 192, 798
PspPI	GGNCC	5 cut(s)	5, 190, 200, 397, 797
PspPPI	RGGWCCY	2 cut(s)	5, 797
PstNI	CAGNNNCTG	1 cut(s)	372
PteI	GCGCGC	1 cut(s)	58
PvuI	CGATCG	1 cut(s)	34
RsaI	GTAC	5 cut(s)	69, 440, 444, 498, 590
RsaNI	GTAC	5 cut(s)	68, 439, 443, 497, 589
SaqAI	TTAA	4 cut(s)	146, 725, 822, 826
SatI	GCNGC	3 cut(s)	63, 237, 740
Sau3AI	GATC	4 cut(s)	27, 31, 709, 815
Sau96I	GGNCC	5 cut(s)	5, 190, 200, 397, 797
ScrFI	CCNGG	3 cut(s)	334, 401, 801
SfaNI	GCATC	3 cut(s)	45, 208, 607
SinI	GGWCC	4 cut(s)	5, 190, 397, 797
SnaBI	TACGTA	1 cut(s)	442
Sse9I	AATT	8 cut(s)	17, 102, 134, 461, 660, 789, 805, 823
SsiI	CCGC	2 cut(s)	391, 739
SspMI	CTAG	4 cut(s)	351, 647, 771, 813
StyD4I	CCNGG	3 cut(s)	332, 399, 799
StyI	CCWWGG	2 cut(s)	172, 474
TaaI	ACNGT	1 cut(s)	318
TaiI	ACGT	3 cut(s)	264, 444, 579
TaqI	TCGA	1 cut(s)	30
TasI	AATT	8 cut(s)	17, 102, 134, 461, 660, 789, 805, 823
TatI	WGTACW	1 cut(s)	588
TauI	GCSGC	1 cut(s)	742
TfiI	GAWTC	2 cut(s)	369, 558
Tru1I	TTAA	4 cut(s)	146, 725, 822, 826
Tru9I	TTAA	4 cut(s)	146, 725, 822, 826
TscAI	CASTG	2 cut(s)	321, 577
TseFI	GTSAC	3 cut(s)	257, 572, 777
TseI	GCWGC	2 cut(s)	62, 236
Tsp45I	GTSAC	3 cut(s)	257, 572, 777
TspDTI	ATGAA	4 cut(s)	31, 374, 455, 627
TspGWI	ACGGA	1 cut(s)	702
TspRI	CASTG	2 cut(s)	321, 577
Van91I	CCANNNNNTGG	2 cut(s)	178, 513
VpaK11BI	GGWCC	4 cut(s)	5, 190, 397, 797
XapI	RAATTY	4 cut(s)	134, 461, 789, 805
XcmI	CCANNNNNNNNNTGG	1 cut(s)	510
XspI	CTAG	4 cut(s)	351, 647, 771, 813
ZraI	GACGTC	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.