Rorug01G0418900

Removes the phosphate from trehalose 6-phosphate to produce free trehalose

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
52088989 .. 52089192
204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0418900.1

Sequence Viewer

Length: 204 bp
ATGCAGGTTCCTTCGCCCTCGGCGGCGTTGATAGCTTCTGACTCGAGATTGGCAACGTTAGCCGCCGCCAAACAACTACGACGTCCAACTCCAGAGCGCGCCGCTCCTACTCCATCGGATCGTTCGACCACCTCGTCGACGACGACTTCGAGGTCCGATTGTCCAATGCCAGAAACGGCTCGTCTGATAGGAAAGAAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

67

Amino Acids

7.09

Weight (kDa)

11.23

Isoelectric Point (pI)

86.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 133, 151
AatII GACGTC 1 cut(s) 85
AccBSI CCGCTC 1 cut(s) 104
AccI GTMKAC 1 cut(s) 137
AccII CGCG 1 cut(s) 99
AciI CCGC 4 cut(s) 23, 63, 66, 102
AclI AACGTT 1 cut(s) 56
AclWI GGATC 1 cut(s) 126
AcyI GRCGYC 1 cut(s) 82
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
AlwI GGATC 1 cut(s) 126
Ama87I CYCGRG 1 cut(s) 43
ArsI GACNNNNNNTTYG 2 cut(s) 130, 162
AspLEI GCGC 2 cut(s) 99, 101
AspS9I GGNCC 1 cut(s) 153
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 1 cut(s) 153
BccI CCATC 1 cut(s) 121
BceAI ACGGC 1 cut(s) 192
BisI GCNGC 4 cut(s) 24, 63, 66, 102
BlsI GCNGC 4 cut(s) 25, 64, 67, 103
Bme18I GGWCC 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 9
BpmI CTGGAG 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 18
BsePI GCGCGC 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 43
BsoBI CYCGRG 1 cut(s) 43
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 4 cut(s) 23, 63, 66, 102
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 1 cut(s) 126
BsrBI CCGCTC 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 18
BssHII GCGCGC 1 cut(s) 97
BssMI GATC 1 cut(s) 118
BssNI GRCGYC 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 191
BstACI GRCGYC 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 99
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 2 cut(s) 99, 101
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 2 cut(s) 32, 59
BstUI CGCG 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 99
CfoI GCGC 2 cut(s) 99, 101
Cfr13I GGNCC 1 cut(s) 153
CviJI RGCY 3 cut(s) 35, 62, 179
CviKI_1 RGCY 3 cut(s) 35, 62, 179
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
DrdI GACNNNNNNGTC 2 cut(s) 133, 151
DseDI GACNNNNNNGTC 2 cut(s) 133, 151
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 43
FblI GTMKAC 1 cut(s) 137
Fnu4HI GCNGC 4 cut(s) 24, 63, 66, 102
Fsp4HI GCNGC 4 cut(s) 24, 63, 66, 102
GlaI GCGC 2 cut(s) 98, 100
GluI GCNGC 4 cut(s) 24, 63, 66, 102
GsuI CTGGAG 1 cut(s) 75
HhaI GCGC 2 cut(s) 99, 101
Hin1I GRCGYC 1 cut(s) 82
Hin6I GCGC 2 cut(s) 97, 99
HinP1I GCGC 2 cut(s) 97, 99
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HinfI GANTC 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 4 cut(s) 40, 118, 157, 186
Hpy188III TCNNGA 2 cut(s) 45, 92
Hpy8I GTNNAC 1 cut(s) 138
Hpy99I CGWCG 4 cut(s) 84, 139, 142, 145
HpyAV CCTTC 1 cut(s) 21
HpyCH4IV ACGT 2 cut(s) 56, 82
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 59
HpySE526I ACGT 2 cut(s) 56, 82
Hsp92I GRCGYC 1 cut(s) 82
HspAI GCGC 2 cut(s) 97, 99
Kzo9I GATC 1 cut(s) 118
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 2 cut(s) 105, 183
MaeII ACGT 2 cut(s) 56, 82
MalI GATC 1 cut(s) 120
MbiI CCGCTC 1 cut(s) 104
MboI GATC 1 cut(s) 118
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 4 cut(s) 28, 142, 144, 192
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 2 cut(s) 32, 59
NdeII GATC 1 cut(s) 118
NlaIV GGNNCC 1 cut(s) 9
PaeR7I CTCGAG 1 cut(s) 43
PauI GCGCGC 1 cut(s) 97
PcsI WCGNNNNNNNCGW 4 cut(s) 122, 131, 140, 146
PkrI GCNGC 4 cut(s) 25, 64, 67, 103
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
Psp1406I AACGTT 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 153
PteI GCGCGC 1 cut(s) 97
SalI GTCGAC 1 cut(s) 136
SatI GCNGC 4 cut(s) 24, 63, 66, 102
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 1 cut(s) 153
SchI GAGTC 1 cut(s) 35
SetI ASST 7 cut(s) 9, 37, 59, 85, 134, 155, 203
Sfr274I CTCGAG 1 cut(s) 43
SgrDI CGTCGACG 1 cut(s) 136
SinI GGWCC 1 cut(s) 153
SlaI CTCGAG 1 cut(s) 43
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
SsiI CCGC 4 cut(s) 23, 63, 66, 102
TaiI ACGT 2 cut(s) 59, 85
TaqI TCGA 4 cut(s) 44, 125, 137, 149
TauI GCSGC 4 cut(s) 26, 65, 68, 104
VpaK11BI GGWCC 1 cut(s) 153
XhoI CTCGAG 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 137
ZraI GACGTC 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.