Rw1G038610

Removes the phosphate from trehalose 6-phosphate to produce free trehalose

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0008155
Physical Location & Seq
Reverse (-)
66137730 .. 66142679
4950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G038610.1

Sequence Viewer

Length: 1098 bp
ATGTCTGCTACTATCTTTTTTAGATCGACGACCATGACGAACTTTGCTAAGCTGAACCAGGCAACGGGGTTTCAGAGATCATCAACATCTGATAAGCAAAAGGTGCAACCTATCAGTACAAAAGTAGTAAAGAACGACGAGAACAGTGGTGATCTTTCCTTGGCATCAATAGCCTCAAACCTGCATGATATTTCTACCATTGTTAATACACCTATCCCCTCATCAGATATAGCTTATAGTTCATGGGTGGTGGAGCACCCTTCTGCACTAGGCTCATTTGATAGGATGATGAAAGCTGCAAAAGGGAAGAGGATTGTTGTCTTTTTAGACTATGACGGCACCCTTTCACCGATTGTTGATGATCCGGATCGTGCTTTCATGTCCAATGAGATGCGTGCAGCAGTACGCGAAGTTGCCAAATATTTTCCAACAGCAGTAATCAGTGGGAGGAGTAGAGACAAGGTAAAAGGATTTGTACAGTTAAGTAATGTATATTATGCCGGCAGCCATGGGATGGACATTATGGTCCCTCCAAAGCCACTAAAGCCCTGTGATGCCAAGAACCACGTCACAGCCACAGCCTCAGCCTTGGATAAGGAGGGTGACATGCTCTTTCAACCTGCCAAAAGATTCCTGCCTGCAATCCAAGAGATAAGCATAGCGTTGGAGGAAATAGCAAGAAAGATAGAAGGTGCAAGAGTAGAGGACAATAGATTCTGCATCTCTGTGCATTACCGGAAGGTCCGGGAAGAGGATTATGGCATATTAGAAGAAAAGGTGAAGTCTGTGATTGAAAACTATCCTGATTTTCACCTAACTCGGGGTAAAAAGGTCCTGGAGATACGTCCATCTATAGAGTGGAACAAAGGTCATGCGCTTGAATATTTACTTGACACTCTTGGATTCAGTAATTCGGGTGATGTATTCCCATTGTACATCGGGGATGATCGAACGGATGAAGATGCTTTCAAGGTGATTGAAGCCAGAGGACAGGGATTTCCAATAATCGTGTCTTCCATCCCAAAGGACACCAAAGCTCCAACCACTCCAAAAGTTTCCACTTTCCTGTCACTTCCAGGAGAATTTGAGAATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Trehalose_PPase

Protein Analysis

365

Amino Acids

40.49

Weight (kDa)

6.42

Isoelectric Point (pI)

32.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trehalose_PPase PF02358 108 - 348 2.6e-61 Trehalose-phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 524
Acc36I ACCTGC 2 cut(s) 189, 628
AccB1I GGYRCC 1 cut(s) 338
AccB7I CCANNNNNTGG 1 cut(s) 514
AccII CGCG 1 cut(s) 408
AccIII TCCGGA 1 cut(s) 364
AclWI GGATC 2 cut(s) 356, 375
AcsI RAATTY 1 cut(s) 1082
AfaI GTAC 4 cut(s) 118, 405, 477, 935
AfiI CCNNNNNNNGG 4 cut(s) 64, 514, 751, 820
AgsI TTSAA 5 cut(s) 617, 794, 881, 970, 980
AjiI CACGTC 1 cut(s) 568
AjnI CCWGG 3 cut(s) 57, 834, 1075
AluBI AGCT 4 cut(s) 52, 233, 296, 1037
AluI AGCT 4 cut(s) 52, 233, 296, 1037
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 1 cut(s) 450
AlwI GGATC 2 cut(s) 356, 375
Ama87I CYCGRG 1 cut(s) 819
Aor13HI TCCGGA 1 cut(s) 364
ApeKI GCWGC 3 cut(s) 296, 398, 504
ApoI RAATTY 1 cut(s) 1082
AspLEI GCGC 1 cut(s) 877
AspS9I GGNCC 3 cut(s) 526, 742, 832
AsuC2I CCSGG 1 cut(s) 746
AsuHPI GGTGA 7 cut(s) 161, 339, 614, 790, 803, 929, 985
AvaI CYCGRG 1 cut(s) 819
AvaII GGWCC 3 cut(s) 526, 742, 832
BanI GGYRCC 1 cut(s) 338
BbsI GAAGAC 1 cut(s) 1005
Bbv12I GWGCWC 1 cut(s) 258
BbvCI CCTCAGC 1 cut(s) 583
BbvI GCAGC 3 cut(s) 283, 410, 516
BccI CCATC 3 cut(s) 508, 856, 1025
BceAI ACGGC 1 cut(s) 352
BciT130I CCWGG 3 cut(s) 59, 836, 1077
BcnI CCSGG 1 cut(s) 746
BcoDI GTCTC 1 cut(s) 450
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 1 cut(s) 852
BfuAI ACCTGC 2 cut(s) 189, 628
BisI GCNGC 3 cut(s) 297, 399, 505
BlpI GCTNAGC 1 cut(s) 48
BlsI GCNGC 3 cut(s) 298, 400, 506
Bme1390I CCNGG 4 cut(s) 59, 746, 836, 1077
Bme18I GGWCC 3 cut(s) 526, 742, 832
BmeT110I CYCGRG 1 cut(s) 819
BmgBI CACGTC 1 cut(s) 568
BmgT120I GGNCC 3 cut(s) 526, 742, 832
BmiI GGNNCC 2 cut(s) 340, 528
BmrFI CCNGG 4 cut(s) 59, 746, 836, 1077
BmsI GCATC 5 cut(s) 173, 381, 544, 729, 952
BpiI GAAGAC 1 cut(s) 1005
BpmI CTGGAG 1 cut(s) 857
Bpu10I CCTNAGC 1 cut(s) 583
Bpu1102I GCTNAGC 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 746
BsaBI GATNNNNATC 1 cut(s) 366
BsaJI CCNNGG 3 cut(s) 159, 508, 588
BsaWI WCCGGW 2 cut(s) 364, 735
BsaXI ACNNNNNCTCC 2 cut(s) 1021, 1051
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 514, 751, 820
Bse118I RCCGGY 1 cut(s) 500
Bse8I GATNNNNATC 1 cut(s) 366
BseAI TCCGGA 1 cut(s) 364
BseBI CCWGG 3 cut(s) 59, 836, 1077
BseDI CCNNGG 3 cut(s) 159, 508, 588
BseGI GGATG 5 cut(s) 291, 519, 949, 961, 1017
BseJI GATNNNNATC 1 cut(s) 366
BseLI CCNNNNNNNGG 4 cut(s) 64, 514, 751, 820
BseMII CTCAG 1 cut(s) 597
BseRI GAGGAG 1 cut(s) 463
BseXI GCAGC 3 cut(s) 283, 410, 516
BsgI GTGCAG 2 cut(s) 249, 417
Bsh1236I CGCG 1 cut(s) 408
BshNI GGYRCC 1 cut(s) 338
BsiHKAI GWGCWC 1 cut(s) 258
BsiHKCI CYCGRG 1 cut(s) 819
BsiSI CCGG 4 cut(s) 365, 501, 736, 745
BslFI GGGAC 1 cut(s) 512
BslI CCNNNNNNNGG 4 cut(s) 64, 514, 751, 820
BsmAI GTCTC 1 cut(s) 450
BsmFI GGGAC 1 cut(s) 512
BsmI GAATGC 1 cut(s) 1096
BsoBI CYCGRG 1 cut(s) 819
Bsp1286I GDGCHC 1 cut(s) 258
Bsp13I TCCGGA 1 cut(s) 364
Bsp1407I TGTACA 2 cut(s) 475, 933
Bsp143I GATC 6 cut(s) 23, 77, 151, 361, 367, 946
Bsp1720I GCTNAGC 1 cut(s) 48
Bsp19I CCATGG 1 cut(s) 508
BspCNI CTCAG 1 cut(s) 596
BspEI TCCGGA 1 cut(s) 364
BspFNI CGCG 1 cut(s) 408
BspLI GGNNCC 2 cut(s) 340, 528
BspMI ACCTGC 2 cut(s) 189, 628
BspPI GGATC 2 cut(s) 356, 375
BspT107I GGYRCC 1 cut(s) 338
BsrFI RCCGGY 1 cut(s) 500
BsrGI TGTACA 2 cut(s) 475, 933
BssAI RCCGGY 1 cut(s) 500
BssECI CCNNGG 3 cut(s) 159, 508, 588
BssMI GATC 6 cut(s) 23, 77, 151, 361, 367, 946
BssT1I CCWWGG 3 cut(s) 159, 508, 588
Bst2UI CCWGG 3 cut(s) 59, 836, 1077
Bst4CI ACNGT 2 cut(s) 146, 480
Bst6I CTCTTC 2 cut(s) 302, 744
BstAPI GCANNNNNTGC 1 cut(s) 103
BstAUI TGTACA 2 cut(s) 475, 933
BstC8I GCNNGC 3 cut(s) 396, 502, 639
BstDEI CTNAG 2 cut(s) 48, 583
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 5 cut(s) 291, 519, 949, 961, 1017
BstFNI CGCG 1 cut(s) 408
BstHHI GCGC 1 cut(s) 877
BstKTI GATC 6 cut(s) 26, 80, 154, 364, 370, 949
BstMAI GTCTC 1 cut(s) 450
BstMBI GATC 6 cut(s) 23, 77, 151, 361, 367, 946
BstMWI GCNNNNNNNGC 3 cut(s) 103, 170, 544
BstNI CCWGG 3 cut(s) 59, 836, 1077
BstNSI RCATGY 1 cut(s) 610
BstSCI CCNGG 4 cut(s) 57, 744, 834, 1075
BstSFI CTRYAG 1 cut(s) 852
BstUI CGCG 1 cut(s) 408
BstV1I GCAGC 3 cut(s) 283, 410, 516
BstV2I GAAGAC 1 cut(s) 1005
BtgI CCRYGG 1 cut(s) 508
BtrI CACGTC 1 cut(s) 568
BtsCI GGATG 5 cut(s) 291, 519, 949, 961, 1017
BtsIMutI CAGTG 2 cut(s) 151, 448
BveI ACCTGC 2 cut(s) 189, 628
Cac8I GCNNGC 3 cut(s) 396, 502, 639
CfoI GCGC 1 cut(s) 877
Cfr10I RCCGGY 1 cut(s) 500
Cfr13I GGNCC 3 cut(s) 526, 742, 832
Csp6I GTAC 4 cut(s) 117, 404, 476, 934
CviAII CATG 7 cut(s) 34, 185, 243, 379, 509, 607, 872
CviQI GTAC 4 cut(s) 117, 404, 476, 934
DdeI CTNAG 2 cut(s) 48, 583
DpnI GATC 6 cut(s) 25, 79, 153, 363, 369, 948
DpnII GATC 6 cut(s) 23, 77, 151, 361, 367, 946
DrdI GACNNNNNNGTC 1 cut(s) 524
DseDI GACNNNNNNGTC 1 cut(s) 524
Eam1104I CTCTTC 2 cut(s) 302, 744
EarI CTCTTC 2 cut(s) 302, 744
Eco130I CCWWGG 3 cut(s) 159, 508, 588
Eco47I GGWCC 3 cut(s) 526, 742, 832
Eco88I CYCGRG 1 cut(s) 819
EcoO109I RGGNCCY 1 cut(s) 832
EcoRII CCWGG 3 cut(s) 57, 834, 1075
EcoT14I CCWWGG 3 cut(s) 159, 508, 588
ErhI CCWWGG 3 cut(s) 159, 508, 588
FaeI CATG 7 cut(s) 37, 188, 246, 382, 512, 610, 875
FaqI GGGAC 1 cut(s) 512
FatI CATG 7 cut(s) 33, 184, 242, 378, 508, 606, 871
Fnu4HI GCNGC 3 cut(s) 297, 399, 505
FokI GGATG 5 cut(s) 298, 526, 956, 968, 1004
Fsp4HI GCNGC 3 cut(s) 297, 399, 505
FspBI CTAG 1 cut(s) 269
GlaI GCGC 1 cut(s) 876
GluI GCNGC 3 cut(s) 297, 399, 505
GsuI CTGGAG 1 cut(s) 857
HapII CCGG 4 cut(s) 365, 501, 736, 745
HhaI GCGC 1 cut(s) 877
Hin1II CATG 7 cut(s) 37, 188, 246, 382, 512, 610, 875
Hin6I GCGC 1 cut(s) 875
HinP1I GCGC 1 cut(s) 875
HinfI GANTC 3 cut(s) 630, 714, 903
HpaII CCGG 4 cut(s) 365, 501, 736, 745
HphI GGTGA 7 cut(s) 161, 339, 614, 790, 803, 929, 985
Hpy188I TCNGA 3 cut(s) 75, 91, 226
Hpy188III TCNNGA 2 cut(s) 365, 803
Hpy99I CGWCG 2 cut(s) 31, 140
HpyAV CCTTC 3 cut(s) 270, 683, 733
HpyCH4III ACNGT 2 cut(s) 146, 480
HpyCH4IV ACGT 2 cut(s) 567, 844
HpyCH4V TGCA 9 cut(s) 106, 184, 266, 299, 398, 641, 695, 720, 730
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 170, 544
HpyF3I CTNAG 2 cut(s) 48, 583
HpySE526I ACGT 2 cut(s) 567, 844
Hsp92II CATG 7 cut(s) 37, 188, 246, 382, 512, 610, 875
HspAI GCGC 1 cut(s) 875
Kpn2I TCCGGA 1 cut(s) 364
KroI GCCGGC 1 cut(s) 500
KroNI GCCGGC 1 cut(s) 502
Kzo9I GATC 6 cut(s) 23, 77, 151, 361, 367, 946
LmnI GCTCC 2 cut(s) 253, 1042
Lsp1109I GCAGC 3 cut(s) 283, 410, 516
LweI GCATC 5 cut(s) 173, 381, 544, 729, 952
MaeI CTAG 1 cut(s) 269
MaeII ACGT 2 cut(s) 567, 844
MaeIII GTNAC 3 cut(s) 568, 602, 1068
MalI GATC 6 cut(s) 25, 79, 153, 363, 369, 948
MboI GATC 6 cut(s) 23, 77, 151, 361, 367, 946
MboII GAAGA 5 cut(s) 319, 761, 782, 971, 1005
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 2 cut(s) 910, 1082
MmeI TCCRAC 3 cut(s) 452, 645, 1064
MroI TCCGGA 1 cut(s) 364
MroNI GCCGGC 1 cut(s) 500
MseI TTAA 2 cut(s) 204, 482
MslI CAYNNNNRTG 1 cut(s) 725
MspI CCGG 4 cut(s) 365, 501, 736, 745
MspR9I CCNGG 4 cut(s) 59, 746, 836, 1077
Mva1269I GAATGC 1 cut(s) 1096
MvaI CCWGG 3 cut(s) 59, 836, 1077
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 3 cut(s) 103, 170, 544
NaeI GCCGGC 1 cut(s) 502
NciI CCSGG 1 cut(s) 746
NcoI CCATGG 1 cut(s) 508
NdeII GATC 6 cut(s) 23, 77, 151, 361, 367, 946
NgoMIV GCCGGC 1 cut(s) 500
NlaIII CATG 7 cut(s) 37, 188, 246, 382, 512, 610, 875
NlaIV GGNNCC 2 cut(s) 340, 528
NmuCI GTSAC 3 cut(s) 568, 602, 1068
NspI RCATGY 1 cut(s) 610
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PctI GAATGC 1 cut(s) 1096
PdiI GCCGGC 1 cut(s) 502
PfeI GAWTC 3 cut(s) 630, 714, 903
PflMI CCANNNNNTGG 1 cut(s) 514
PfoI TCCNGGA 3 cut(s) 744, 834, 1075
PkrI GCNGC 3 cut(s) 298, 400, 506
PpuMI RGGWCCY 1 cut(s) 832
Psp5II RGGWCCY 1 cut(s) 832
Psp6I CCWGG 3 cut(s) 57, 834, 1075
PspGI CCWGG 3 cut(s) 57, 834, 1075
PspN4I GGNNCC 2 cut(s) 340, 528
PspPI GGNCC 3 cut(s) 526, 742, 832
PspPPI RGGWCCY 1 cut(s) 832
RsaI GTAC 4 cut(s) 118, 405, 477, 935
RsaNI GTAC 4 cut(s) 117, 404, 476, 934
RseI CAYNNNNRTG 1 cut(s) 725
SaqAI TTAA 2 cut(s) 204, 482
SatI GCNGC 3 cut(s) 297, 399, 505
Sau3AI GATC 6 cut(s) 23, 77, 151, 361, 367, 946
Sau96I GGNCC 3 cut(s) 526, 742, 832
ScrFI CCNGG 4 cut(s) 59, 746, 836, 1077
SduI GDGCHC 1 cut(s) 258
SfaNI GCATC 5 cut(s) 173, 381, 544, 729, 952
SfcI CTRYAG 1 cut(s) 852
SinI GGWCC 3 cut(s) 526, 742, 832
SmiMI CAYNNNNRTG 1 cut(s) 725
Sse9I AATT 2 cut(s) 910, 1082
SspI AATATT 2 cut(s) 422, 884
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 4 cut(s) 57, 744, 834, 1075
StyI CCWWGG 3 cut(s) 159, 508, 588
TaaI ACNGT 2 cut(s) 146, 480
TaiI ACGT 2 cut(s) 570, 847
TaqI TCGA 2 cut(s) 26, 949
TasI AATT 2 cut(s) 910, 1082
TatI WGTACW 3 cut(s) 116, 475, 933
TfiI GAWTC 3 cut(s) 630, 714, 903
Tru1I TTAA 2 cut(s) 204, 482
Tru9I TTAA 2 cut(s) 204, 482
TscAI CASTG 2 cut(s) 151, 448
TseFI GTSAC 3 cut(s) 568, 602, 1068
TseI GCWGC 3 cut(s) 296, 398, 504
Tsp45I GTSAC 3 cut(s) 568, 602, 1068
TspDTI ATGAA 4 cut(s) 231, 305, 367, 972
TspGWI ACGGA 1 cut(s) 968
TspRI CASTG 2 cut(s) 151, 448
Van91I CCANNNNNTGG 1 cut(s) 514
VpaK11BI GGWCC 3 cut(s) 526, 742, 832
XapI RAATTY 1 cut(s) 1082
XceI RCATGY 1 cut(s) 610
XcmI CCANNNNNNNNNTGG 1 cut(s) 855
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.