Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0011092

Physical Location & Seq

Genomic Coordinates Forward (+)

20716086 .. 20719443

Gene Structure 3358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1205800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGACGGATTCGAATCTGGAGTTGCAGGAATCGGGTTGGGAGGAGCTGAGGAGAGAGGCCAGGAAGATTGAGGGAGATCTTGATGTGAAGCTCTCTTCTTACGCTAAGCTTGGTGCTAGGTTCACACAAGGAGGTTATGTGGAATCTGGGTCACCATCTGTTAGCAGGTCATGGAAGTCCATGGAAATGGAGATCCAGTCGTTGCTTGAGAAACTTTTGGATATAAATGATTCAATGAGTCGATGTGCTGCATCTGCTACACCAGCTACTTCTGTAACTCAGAAGCTAGCAAGGCACAGAGACATACTTCATGAGTTTACCCAGGAGTTTAGAAGAATCAAGGGGAACATAAATTCATTGAGGGAACATGCGGAGCTTCTGACTTCAGTCAGGGACGATATCAGCGAGTACAAGGCATCTGGGATTATGTCACCAAGAATGCAGATACTACGGGAAAGAGCTGCCATCCATGGAAGTGTGTCACATGTAAGTTTAAGTGCTATTTGGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005794 GO:0005795 GO:0005797 GO:0005801 GO:0005802 GO:0005829 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031201 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032879 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048209 GO:0048284 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0097305 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

171

Amino Acids

19.11

Weight (kDa)

6.53

Isoelectric Point (pI)

56.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45200 AT2G45200
fragaria_vesca	FvH4_7g11270
malus_domestica	MD02G1205800.v1.1 MD07G1117300.v1.1
prunus_persica	Prupe.2G140500_v2.0.a1 Prupe.2G140500_v2.0.a1
pyrus_communis	pycom02g17040 pycom07g10740
rosa_chinensis	RchiOBHm_Chr1g0349411
rosa_laevigata	RLG00000028551
rosa_multiflora	Rmu_sc0002495.1_g000004
rosa_roxburghii	Rroxscaffold_4G00305560
rosa_rugosa	Rorug01G0203500 Rorug01G0203600.1
rosa_samantha	Rh1AG220900 Rh1BG187000 Rh1CG205900 Rh1DG216300
rosa_wichuraiana	Rw1G018770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	156
AciI	CCGC	1 cut(s)	371
AclWI	GGATC	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	352
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	410
AflIII	ACRYGT	1 cut(s)	484
AgsI	TTSAA	1 cut(s)	234
AjnI	CCWGG	2 cut(s)	59, 321
AluBI	AGCT	7 cut(s)	46, 91, 109, 266, 286, 376, 461
AluI	AGCT	7 cut(s)	46, 91, 109, 266, 286, 376, 461
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	187
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	2 cut(s)	248, 461
ApoI	RAATTY	1 cut(s)	352
AsuHPI	GGTGA	2 cut(s)	144, 423
AsuII	TTCGAA	1 cut(s)	11
AsuNHI	GCTAGC	1 cut(s)	286
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	235, 448
BccI	CCATC	2 cut(s)	163, 473
BciT130I	CCWGG	2 cut(s)	61, 323
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	2 cut(s)	117, 287
BfuAI	ACCTGC	1 cut(s)	156
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	2 cut(s)	249, 462
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	2 cut(s)	250, 463
Bme1390I	CCNGG	2 cut(s)	61, 323
BmrFI	CCNGG	2 cut(s)	61, 323
BmsI	GCATC	2 cut(s)	260, 425
BmtI	GCTAGC	1 cut(s)	290
BoxI	GACNNNNGTC	1 cut(s)	386
BpmI	CTGGAG	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	47
Bpu1102I	GCTNAGC	1 cut(s)	105
Bpu14I	TTCGAA	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	12
BsaJI	CCNNGG	3 cut(s)	180, 321, 469
BsaXI	ACNNNNNCTCC	4 cut(s)	123, 153, 182, 212
Bse1I	ACTGG	1 cut(s)	196
Bse8I	GATNNNNATC	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	61, 323
BseDI	CCNNGG	3 cut(s)	180, 321, 469
BseGI	GGATG	1 cut(s)	465
BseJI	GATNNNNATC	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	38, 293
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	2 cut(s)	56, 64
BseXI	GCAGC	2 cut(s)	235, 448
BshFI	GGCC	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	407
BsmAI	GTCTC	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	407
BsmI	GAATGC	1 cut(s)	444
BsnI	GGCC	1 cut(s)	59
Bsp119I	TTCGAA	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	76, 192
Bsp1720I	GCTNAGC	1 cut(s)	105
Bsp19I	CCATGG	2 cut(s)	180, 469
BspACI	CCGC	1 cut(s)	371
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	2 cut(s)	39, 292
BspHI	TCATGA	1 cut(s)	310
BspMI	ACCTGC	1 cut(s)	156
BspOI	GCTAGC	1 cut(s)	290
BspPI	GGATC	1 cut(s)	187
BspT104I	TTCGAA	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	3 cut(s)	180, 321, 469
BssMI	GATC	2 cut(s)	76, 192
BssT1I	CCWWGG	2 cut(s)	180, 469
Bst2UI	CCWGG	2 cut(s)	61, 323
Bst6I	CTCTTC	1 cut(s)	100
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	3 cut(s)	47, 105, 279
BstDSI	CCRYGG	2 cut(s)	180, 469
BstEII	GGTNACC	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	465
BstKTI	GATC	2 cut(s)	79, 195
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	2 cut(s)	76, 192
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 263, 292
BstNI	CCWGG	2 cut(s)	61, 323
BstNSI	RCATGY	2 cut(s)	371, 488
BstPAI	GACNNNNGTC	1 cut(s)	386
BstPI	GGTNACC	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	59, 321
BstV1I	GCAGC	2 cut(s)	235, 448
BstX2I	RGATCY	2 cut(s)	76, 192
BstXI	CCANNNNNNTGG	1 cut(s)	187
BstYI	RGATCY	2 cut(s)	76, 192
BsuRI	GGCC	1 cut(s)	59
BtgI	CCRYGG	2 cut(s)	180, 469
BtsCI	GGATG	1 cut(s)	465
BveI	ACCTGC	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	288
CciI	TCATGA	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	6 cut(s)	171, 181, 311, 368, 470, 485
CviJI	RGCY	8 cut(s)	46, 59, 91, 109, 266, 286, 376, 461
CviKI_1	RGCY	8 cut(s)	46, 59, 91, 109, 266, 286, 376, 461
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	3 cut(s)	47, 105, 279
DpnI	GATC	2 cut(s)	78, 194
DpnII	GATC	2 cut(s)	76, 192
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Eco130I	CCWWGG	2 cut(s)	180, 469
Eco32I	GATATC	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	369
Eco91I	GGTNACC	1 cut(s)	150
EcoO65I	GGTNACC	1 cut(s)	150
EcoRII	CCWGG	2 cut(s)	59, 321
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	2 cut(s)	180, 469
ErhI	CCWWGG	2 cut(s)	180, 469
FaeI	CATG	6 cut(s)	174, 184, 314, 371, 473, 488
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	6 cut(s)	170, 180, 310, 367, 469, 484
Fnu4HI	GCNGC	2 cut(s)	249, 462
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	2 cut(s)	249, 462
FspBI	CTAG	2 cut(s)	117, 287
GluI	GCNGC	2 cut(s)	249, 462
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	59
Hin1II	CATG	6 cut(s)	174, 184, 314, 371, 473, 488
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	7 cut(s)	8, 13, 29, 143, 230, 238, 336
HphI	GGTGA	2 cut(s)	144, 423
Hpy166II	GTNNAC	2 cut(s)	123, 318
Hpy188I	TCNGA	2 cut(s)	282, 381
Hpy188III	TCNNGA	3 cut(s)	17, 80, 311
Hpy8I	GTNNAC	2 cut(s)	123, 318
HpyCH4V	TGCA	3 cut(s)	25, 251, 442
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 263, 292
HpyF3I	CTNAG	3 cut(s)	47, 105, 279
Hsp92II	CATG	6 cut(s)	174, 184, 314, 371, 473, 488
Kzo9I	GATC	2 cut(s)	76, 192
LmnI	GCTCC	2 cut(s)	43, 373
Lsp1109I	GCAGC	2 cut(s)	235, 448
LweI	GCATC	2 cut(s)	260, 425
MaeI	CTAG	2 cut(s)	117, 287
MaeIII	GTNAC	4 cut(s)	150, 274, 429, 480
MalI	GATC	2 cut(s)	78, 194
MboI	GATC	2 cut(s)	76, 192
MboII	GAAGA	3 cut(s)	76, 87, 345
MflI	RGATCY	2 cut(s)	76, 192
MluCI	AATT	1 cut(s)	352
MlyI	GAGTC	1 cut(s)	247
MnlI	CCTC	6 cut(s)	34, 42, 49, 64, 125, 354
MseI	TTAA	1 cut(s)	494
MslI	CAYNNNNRTG	2 cut(s)	185, 474
MspR9I	CCNGG	2 cut(s)	61, 323
Mva1269I	GAATGC	1 cut(s)	444
MvaI	CCWGG	2 cut(s)	61, 323
MwoI	GCNNNNNNNGC	3 cut(s)	254, 263, 292
NcoI	CCATGG	2 cut(s)	180, 469
NdeII	GATC	2 cut(s)	76, 192
NheI	GCTAGC	1 cut(s)	286
NlaIII	CATG	6 cut(s)	174, 184, 314, 371, 473, 488
NmuCI	GTSAC	3 cut(s)	150, 429, 480
NspI	RCATGY	2 cut(s)	371, 488
NspV	TTCGAA	1 cut(s)	11
PagI	TCATGA	1 cut(s)	310
PciI	ACATGT	1 cut(s)	484
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PctI	GAATGC	1 cut(s)	444
PfeI	GAWTC	6 cut(s)	8, 13, 29, 143, 230, 336
PkrI	GCNGC	2 cut(s)	250, 463
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
PscI	ACATGT	1 cut(s)	484
PshAI	GACNNNNGTC	1 cut(s)	386
Psp6I	CCWGG	2 cut(s)	59, 321
PspEI	GGTNACC	1 cut(s)	150
PspGI	CCWGG	2 cut(s)	59, 321
PsuI	RGATCY	2 cut(s)	76, 192
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
RseI	CAYNNNNRTG	2 cut(s)	185, 474
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	2 cut(s)	249, 462
Sau3AI	GATC	2 cut(s)	76, 192
SchI	GAGTC	1 cut(s)	247
ScrFI	CCNGG	2 cut(s)	61, 323
SfaNI	GCATC	2 cut(s)	260, 425
SfuI	TTCGAA	1 cut(s)	11
SmiMI	CAYNNNNRTG	2 cut(s)	185, 474
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	1 cut(s)	352
SsiI	CCGC	1 cut(s)	371
SspMI	CTAG	2 cut(s)	117, 287
StyD4I	CCNGG	2 cut(s)	59, 321
StyI	CCWWGG	2 cut(s)	180, 469
TaqI	TCGA	2 cut(s)	11, 241
TasI	AATT	1 cut(s)	352
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	6 cut(s)	8, 13, 29, 143, 230, 336
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TseFI	GTSAC	3 cut(s)	150, 429, 480
TseI	GCWGC	2 cut(s)	248, 461
Tsp45I	GTSAC	3 cut(s)	150, 429, 480
TspDTI	ATGAA	2 cut(s)	299, 345
TspGWI	ACGGA	1 cut(s)	20
XapI	RAATTY	1 cut(s)	352
XceI	RCATGY	2 cut(s)	371, 488
XspI	CTAG	2 cut(s)	117, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.