Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0011092

Physical Location & Seq

Genomic Coordinates Forward (+)

10942683 .. 10947163

Gene Structure 4481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g10740.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGACGGATTCGAATCTGGAGTTGCAGGAATCGGGTTGGGAGGAGCTGAGGAGAGAGGCCAGGAAGATTGAGGGAGATCTTGATGTGAAGCTCTCTTCTTACGCTAAGCTTGGTGCTAGGTTCACACAAGGAGGTTATGTAGATTCTGGGTCACCACCTGTTAGTTCAAGCAGGTCATGGAAGTCCATGGAAATGGAGATCGAGTCTTTGCTTGAGAAACTTTTGGATATCAATGATTCAATGAGTCGATGTGCTGCATCTGCTACACCAGCTACTTCTGTAACTCAGAAGCTAGCAAGGCATAGAGACATACTTCATGAGTTTACCCAGGAGTTTAGAAGAATCAAGGGGAACATAAATTCATTGAGGGAACATGCAGAGCTTCTGACTTCAGTCAGGGATGATATCAGTGAGTACAAGGCATCGGGGAGTATGTCACCAAGAATGCAAATACTACGGGAGAGAGCTGCCATCCACGGAAGCGTATCTCATATAGATGAGGTGATTAGTCAAGCTCAAACAACAAGGGCAGTCTTGGGCTCTCAAAGGGCTCTGTTTGGAGATGTTCAAGGGAAAGTGAAAAATCTAAGTGACAAGTTCCCTATAATCCGCGGCCTACTTGGTTCGATTCGAAGGCGGCGATCAAGAGACACGCTTATTCTGTCTGCAGTCATTGCAGCTTGTACCTTGTTTCTTATTATCTACTGGCTTTCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005794 GO:0005795 GO:0005797 GO:0005801 GO:0005802 GO:0005829 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031201 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032879 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048209 GO:0048284 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0097305 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

240

Amino Acids

26.78

Weight (kDa)

9.29

Isoelectric Point (pI)

62.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45200 AT2G45200
fragaria_vesca	FvH4_7g11270
malus_domestica	MD02G1205800.v1.1 MD07G1117300.v1.1
prunus_persica	Prupe.2G140500_v2.0.a1 Prupe.2G140500_v2.0.a1
pyrus_communis	pycom02g17040 pycom07g10740
rosa_chinensis	RchiOBHm_Chr1g0349411
rosa_laevigata	RLG00000028551
rosa_multiflora	Rmu_sc0002495.1_g000004
rosa_roxburghii	Rroxscaffold_4G00305560
rosa_rugosa	Rorug01G0203500 Rorug01G0203600.1
rosa_samantha	Rh1AG220900 Rh1BG187000 Rh1CG205900 Rh1DG216300
rosa_wichuraiana	Rw1G018770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	162
AccII	CGCG	1 cut(s)	612
AciI	CCGC	3 cut(s)	610, 612, 637
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	2 cut(s)	416, 685
AgsI	TTSAA	4 cut(s)	168, 240, 569, 714
AjnI	CCWGG	2 cut(s)	59, 327
AluBI	AGCT	9 cut(s)	46, 91, 109, 272, 292, 382, 467, 515, 680
AluI	AGCT	9 cut(s)	46, 91, 109, 272, 292, 382, 467, 515, 680
Alw26I	GTCTC	2 cut(s)	300, 642
AoxI	GGCC	2 cut(s)	57, 613
ApeKI	GCWGC	3 cut(s)	254, 467, 677
ApoI	RAATTY	1 cut(s)	358
AsuHPI	GGTGA	3 cut(s)	144, 429, 514
AsuII	TTCGAA	2 cut(s)	11, 631
AsuNHI	GCTAGC	1 cut(s)	292
BanII	GRGCYC	2 cut(s)	542, 553
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	3 cut(s)	241, 454, 689
BccI	CCATC	1 cut(s)	479
BciT130I	CCWGG	2 cut(s)	61, 329
BcoDI	GTCTC	2 cut(s)	300, 642
BfaI	CTAG	2 cut(s)	117, 293
BfmI	CTRYAG	1 cut(s)	666
BfuAI	ACCTGC	1 cut(s)	162
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	5 cut(s)	255, 468, 613, 638, 678
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	5 cut(s)	256, 469, 614, 639, 679
Bme1390I	CCNGG	2 cut(s)	61, 329
BmrFI	CCNGG	2 cut(s)	61, 329
BmsI	GCATC	2 cut(s)	266, 431
BmtI	GCTAGC	1 cut(s)	296
BoxI	GACNNNNGTC	1 cut(s)	392
BpmI	CTGGAG	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	47
Bpu1102I	GCTNAGC	1 cut(s)	105
Bpu14I	TTCGAA	2 cut(s)	11, 631
BpuEI	CTTGAG	1 cut(s)	233
BsaBI	GATNNNNATC	1 cut(s)	12
BsaJI	CCNNGG	4 cut(s)	186, 327, 475, 610
BsaXI	ACNNNNNCTCC	4 cut(s)	123, 153, 188, 218
Bse1I	ACTGG	1 cut(s)	710
Bse3DI	GCAATG	1 cut(s)	672
Bse8I	GATNNNNATC	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	61, 329
BseDI	CCNNGG	4 cut(s)	186, 327, 475, 610
BseGI	GGATG	2 cut(s)	406, 471
BseJI	GATNNNNATC	1 cut(s)	12
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	2 cut(s)	38, 299
BseNI	ACTGG	1 cut(s)	710
BseRI	GAGGAG	2 cut(s)	56, 64
BseXI	GCAGC	3 cut(s)	241, 454, 689
Bsh1236I	CGCG	1 cut(s)	612
BshFI	GGCC	2 cut(s)	59, 615
BsmAI	GTCTC	2 cut(s)	300, 642
BsmI	GAATGC	1 cut(s)	450
BsnI	GGCC	2 cut(s)	59, 615
Bsp119I	TTCGAA	2 cut(s)	11, 631
Bsp1286I	GDGCHC	2 cut(s)	542, 553
Bsp143I	GATC	3 cut(s)	76, 198, 641
Bsp1720I	GCTNAGC	1 cut(s)	105
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	3 cut(s)	610, 612, 637
BspANI	GGCC	2 cut(s)	59, 615
BspCNI	CTCAG	2 cut(s)	39, 298
BspFNI	CGCG	1 cut(s)	612
BspHI	TCATGA	1 cut(s)	316
BspMAI	CTGCAG	1 cut(s)	670
BspMI	ACCTGC	1 cut(s)	162
BspOI	GCTAGC	1 cut(s)	296
BspT104I	TTCGAA	2 cut(s)	11, 631
BsrDI	GCAATG	1 cut(s)	672
BsrI	ACTGG	1 cut(s)	710
BssECI	CCNNGG	4 cut(s)	186, 327, 475, 610
BssMI	GATC	3 cut(s)	76, 198, 641
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	2 cut(s)	61, 329
Bst6I	CTCTTC	1 cut(s)	100
BstAPI	GCANNNNNTGC	1 cut(s)	674
BstBI	TTCGAA	2 cut(s)	11, 631
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	4 cut(s)	47, 105, 285, 587
BstDSI	CCRYGG	3 cut(s)	186, 475, 610
BstEII	GGTNACC	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	406, 471
BstFNI	CGCG	1 cut(s)	612
BstKTI	GATC	3 cut(s)	79, 201, 644
BstMAI	GTCTC	2 cut(s)	300, 642
BstMBI	GATC	3 cut(s)	76, 198, 641
BstMWI	GCNNNNNNNGC	4 cut(s)	260, 269, 298, 674
BstNI	CCWGG	2 cut(s)	61, 329
BstNSI	RCATGY	1 cut(s)	377
BstPAI	GACNNNNGTC	1 cut(s)	392
BstPI	GGTNACC	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	59, 327
BstSFI	CTRYAG	1 cut(s)	666
BstUI	CGCG	1 cut(s)	612
BstV1I	GCAGC	3 cut(s)	241, 454, 689
BstX2I	RGATCY	1 cut(s)	76
BstXI	CCANNNNNNTGG	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	76
BsuRI	GGCC	2 cut(s)	59, 615
BtgI	CCRYGG	3 cut(s)	186, 475, 610
BtsCI	GGATG	2 cut(s)	406, 471
BtsIMutI	CAGTG	1 cut(s)	415
BveI	ACCTGC	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	294
CciI	TCATGA	1 cut(s)	316
Cfr42I	CCGCGG	1 cut(s)	613
Csp6I	GTAC	2 cut(s)	415, 684
CviAII	CATG	4 cut(s)	177, 187, 317, 374
CviQI	GTAC	2 cut(s)	415, 684
DdeI	CTNAG	4 cut(s)	47, 105, 285, 587
DpnI	GATC	3 cut(s)	78, 200, 643
DpnII	GATC	3 cut(s)	76, 198, 641
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	2 cut(s)	542, 553
Eco32I	GATATC	2 cut(s)	229, 406
Eco57I	CTGAAG	1 cut(s)	375
Eco91I	GGTNACC	1 cut(s)	150
EcoO65I	GGTNACC	1 cut(s)	150
EcoRII	CCWGG	2 cut(s)	59, 327
EcoRV	GATATC	2 cut(s)	229, 406
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	2 cut(s)	542, 553
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	4 cut(s)	180, 190, 320, 377
FatI	CATG	4 cut(s)	176, 186, 316, 373
Fnu4HI	GCNGC	5 cut(s)	255, 468, 613, 638, 678
FokI	GGATG	2 cut(s)	413, 458
FriOI	GRGCYC	2 cut(s)	542, 553
Fsp4HI	GCNGC	5 cut(s)	255, 468, 613, 638, 678
FspBI	CTAG	2 cut(s)	117, 293
GluI	GCNGC	5 cut(s)	255, 468, 613, 638, 678
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	59, 615
Hin1II	CATG	4 cut(s)	180, 190, 320, 377
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	9 cut(s)	8, 13, 29, 143, 203, 236, 244, 342, 628
HphI	GGTGA	3 cut(s)	144, 429, 514
Hpy166II	GTNNAC	2 cut(s)	123, 324
Hpy188I	TCNGA	2 cut(s)	288, 387
Hpy188III	TCNNGA	4 cut(s)	17, 80, 317, 645
Hpy8I	GTNNAC	2 cut(s)	123, 324
HpyAV	CCTTC	1 cut(s)	627
HpyCH4V	TGCA	6 cut(s)	25, 257, 377, 448, 668, 677
HpyF10VI	GCNNNNNNNGC	4 cut(s)	260, 269, 298, 674
HpyF3I	CTNAG	4 cut(s)	47, 105, 285, 587
Hsp92II	CATG	4 cut(s)	180, 190, 320, 377
KspI	CCGCGG	1 cut(s)	613
Kzo9I	GATC	3 cut(s)	76, 198, 641
LmnI	GCTCC	1 cut(s)	43
Lsp1109I	GCAGC	3 cut(s)	241, 454, 689
LweI	GCATC	2 cut(s)	266, 431
MaeI	CTAG	2 cut(s)	117, 293
MaeIII	GTNAC	4 cut(s)	150, 280, 435, 590
MalI	GATC	3 cut(s)	78, 200, 643
MboI	GATC	3 cut(s)	76, 198, 641
MboII	GAAGA	3 cut(s)	76, 87, 351
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	2 cut(s)	542, 553
MluCI	AATT	1 cut(s)	358
MlyI	GAGTC	2 cut(s)	212, 253
MnlI	CCTC	7 cut(s)	34, 42, 49, 64, 125, 360, 493
MslI	CAYNNNNRTG	2 cut(s)	191, 495
MspA1I	CMGCKG	1 cut(s)	612
MspR9I	CCNGG	2 cut(s)	61, 329
Mva1269I	GAATGC	1 cut(s)	450
MvaI	CCWGG	2 cut(s)	61, 329
MvnI	CGCG	1 cut(s)	612
MwoI	GCNNNNNNNGC	4 cut(s)	260, 269, 298, 674
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	3 cut(s)	76, 198, 641
NheI	GCTAGC	1 cut(s)	292
NlaIII	CATG	4 cut(s)	180, 190, 320, 377
NmuCI	GTSAC	3 cut(s)	150, 435, 590
NspI	RCATGY	1 cut(s)	377
NspV	TTCGAA	2 cut(s)	11, 631
PagI	TCATGA	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	1 cut(s)	637
PctI	GAATGC	1 cut(s)	450
PfeI	GAWTC	7 cut(s)	8, 13, 29, 143, 236, 342, 628
PkrI	GCNGC	5 cut(s)	256, 469, 614, 639, 679
PleI	GAGTC	2 cut(s)	211, 252
PpsI	GAGTC	2 cut(s)	211, 252
PshAI	GACNNNNGTC	1 cut(s)	392
Psp6I	CCWGG	2 cut(s)	59, 327
PspEI	GGTNACC	1 cut(s)	150
PspGI	CCWGG	2 cut(s)	59, 327
PstI	CTGCAG	1 cut(s)	670
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	2 cut(s)	416, 685
RsaNI	GTAC	2 cut(s)	415, 684
RseI	CAYNNNNRTG	2 cut(s)	191, 495
SacII	CCGCGG	1 cut(s)	613
SatI	GCNGC	5 cut(s)	255, 468, 613, 638, 678
Sau3AI	GATC	3 cut(s)	76, 198, 641
SchI	GAGTC	2 cut(s)	212, 253
ScrFI	CCNGG	2 cut(s)	61, 329
SduI	GDGCHC	2 cut(s)	542, 553
SfaNI	GCATC	2 cut(s)	266, 431
SfcI	CTRYAG	1 cut(s)	666
Sfr303I	CCGCGG	1 cut(s)	613
SfuI	TTCGAA	2 cut(s)	11, 631
SgrBI	CCGCGG	1 cut(s)	613
SmiMI	CAYNNNNRTG	2 cut(s)	191, 495
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	1 cut(s)	358
SsiI	CCGC	3 cut(s)	610, 612, 637
SspMI	CTAG	2 cut(s)	117, 293
StyD4I	CCNGG	2 cut(s)	59, 327
StyI	CCWWGG	1 cut(s)	186
TaqI	TCGA	5 cut(s)	11, 201, 247, 626, 631
TasI	AATT	1 cut(s)	358
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	2 cut(s)	615, 640
TfiI	GAWTC	7 cut(s)	8, 13, 29, 143, 236, 342, 628
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	3 cut(s)	150, 435, 590
TseI	GCWGC	3 cut(s)	254, 467, 677
Tsp45I	GTSAC	3 cut(s)	150, 435, 590
TspDTI	ATGAA	2 cut(s)	305, 351
TspGWI	ACGGA	2 cut(s)	20, 492
TspRI	CASTG	1 cut(s)	415
XapI	RAATTY	1 cut(s)	358
XceI	RCATGY	1 cut(s)	377
XspI	CTAG	2 cut(s)	117, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.