Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0011092

Physical Location & Seq

Genomic Coordinates Forward (+)

24220019 .. 24224188

Gene Structure 4170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028551

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGGATGACCCAGTTTCGTAGTTCTGGCAATTTAGCATCAGAGATTGCAAAGGTAGGTCGCAGTTATGTGGAATCTGGGTCACCATCTGTTGGGTCCAGCAGGTCATGGAAGTCTATGGAAATGGAAATCCAGTCTTTGCTCGAGAAGCTATTGGATATAAATGATTCAATGAGCCGATGTGCTGCTTCTGCTACACCAGCTACTTCTGTTACTCAGAAGCTAGCAAGGCATAGAGACATACTTCATGAGTTTACTCAGGAGTTCAGACGAATCAAAGGGAACATAAATTCATTGAGGGAACATGCGGAGCTTCTAACTTCTGTCAGGGATGACATTAGCGAGTACAAGGCATCTGGGAGTATGTCTCCAAGAATGCAAATACTACGGGAGAGAGCTGCTATCCATGGAAGCGTATCTCATATAGATGAGGTGATCAGTCAAGCTCAAACAACAAGGGCAGTCTTGGGCTCTCAAAGGGCGTTGTTTGGAGATGTTCAAGGCAAAGTGAAGAATCTAAGTGACAAGTTCCCTGTTATCCGTGGCCTACTTGGTTCAATTAAAAGGAGGCGATCCAGAGACACAATTATTCTGTCTGCAGTCATTGCAGCTTGTACCTTGTTTCTTATCATCTACTGGCTTTCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005794 GO:0005795 GO:0005797 GO:0005801 GO:0005802 GO:0005829 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031201 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032879 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048209 GO:0048284 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0097305 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

217

Amino Acids

23.95

Weight (kDa)

10.0

Isoelectric Point (pI)

57.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE_C	PF12352	127 - 191	1.3e-16	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45200 AT2G45200
fragaria_vesca	FvH4_7g11270
malus_domestica	MD02G1205800.v1.1 MD07G1117300.v1.1
prunus_persica	Prupe.2G140500_v2.0.a1 Prupe.2G140500_v2.0.a1
pyrus_communis	pycom02g17040 pycom07g10740
rosa_chinensis	RchiOBHm_Chr1g0349411
rosa_laevigata	RLG00000028551
rosa_multiflora	Rmu_sc0002495.1_g000004
rosa_roxburghii	Rroxscaffold_4G00305560
rosa_rugosa	Rorug01G0203500 Rorug01G0203600.1
rosa_samantha	Rh1AG220900 Rh1BG187000 Rh1CG205900 Rh1DG216300
rosa_wichuraiana	Rw1G018770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	93
AccB7I	CCANNNNNTGG	1 cut(s)	92
AciI	CCGC	1 cut(s)	308
AclWI	GGATC	1 cut(s)	567
AcsI	RAATTY	1 cut(s)	289
AfaI	GTAC	2 cut(s)	347, 616
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	4 cut(s)	171, 500, 558, 645
AluBI	AGCT	7 cut(s)	151, 203, 223, 313, 398, 446, 611
AluI	AGCT	7 cut(s)	151, 203, 223, 313, 398, 446, 611
Alw26I	GTCTC	3 cut(s)	231, 372, 573
AlwI	GGATC	1 cut(s)	567
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	544
ApeKI	GCWGC	3 cut(s)	185, 398, 608
ApoI	RAATTY	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	96
AsuHPI	GGTGA	2 cut(s)	75, 445
AsuNHI	GCTAGC	1 cut(s)	223
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	96
BanII	GRGCYC	1 cut(s)	473
BbvI	GCAGC	3 cut(s)	172, 385, 620
BccI	CCATC	1 cut(s)	94
BclI	TGATCA	1 cut(s)	435
BcoDI	GTCTC	3 cut(s)	231, 372, 573
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	597
BfuAI	ACCTGC	1 cut(s)	93
BisI	GCNGC	3 cut(s)	186, 399, 609
BlsI	GCNGC	3 cut(s)	187, 400, 610
Bme18I	GGWCC	1 cut(s)	96
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	97
BmrI	ACTGGG	1 cut(s)	7
BmsI	GCATC	2 cut(s)	47, 362
BmtI	GCTAGC	1 cut(s)	227
BmuI	ACTGGG	1 cut(s)	7
BplI	GAGNNNNNCTC	2 cut(s)	352, 384
BsaJI	CCNNGG	2 cut(s)	406, 541
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse1I	ACTGG	3 cut(s)	13, 133, 641
Bse3DI	GCAATG	1 cut(s)	603
BseDI	CCNNGG	2 cut(s)	406, 541
BseGI	GGATG	2 cut(s)	12, 337
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	2 cut(s)	230, 272
BseNI	ACTGG	3 cut(s)	13, 133, 641
BseXI	GCAGC	3 cut(s)	172, 385, 620
BshFI	GGCC	1 cut(s)	546
BsiHKCI	CYCGRG	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmAI	GTCTC	3 cut(s)	231, 372, 573
BsmI	GAATGC	1 cut(s)	381
BsnI	GGCC	1 cut(s)	546
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	2 cut(s)	435, 572
Bsp19I	CCATGG	1 cut(s)	406
BspACI	CCGC	1 cut(s)	308
BspANI	GGCC	1 cut(s)	546
BspCNI	CTCAG	2 cut(s)	229, 271
BspHI	TCATGA	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	97
BspMAI	CTGCAG	1 cut(s)	601
BspMI	ACCTGC	1 cut(s)	93
BspOI	GCTAGC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	567
BsrDI	GCAATG	1 cut(s)	603
BsrI	ACTGG	3 cut(s)	13, 133, 641
BssECI	CCNNGG	2 cut(s)	406, 541
BssMI	GATC	2 cut(s)	435, 572
BssT1I	CCWWGG	1 cut(s)	406
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	3 cut(s)	216, 258, 518
BstDSI	CCRYGG	2 cut(s)	406, 541
BstEII	GGTNACC	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	12, 337
BstKTI	GATC	2 cut(s)	438, 575
BstMAI	GTCTC	3 cut(s)	231, 372, 573
BstMBI	GATC	2 cut(s)	435, 572
BstMWI	GCNNNNNNNGC	5 cut(s)	148, 191, 200, 229, 605
BstNSI	RCATGY	1 cut(s)	308
BstPI	GGTNACC	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	597
BstV1I	GCAGC	3 cut(s)	172, 385, 620
BsuRI	GGCC	1 cut(s)	546
BtgI	CCRYGG	2 cut(s)	406, 541
BtsCI	GGATG	2 cut(s)	12, 337
BveI	ACCTGC	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	225
CciI	TCATGA	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	96
Csp6I	GTAC	2 cut(s)	346, 615
CviAII	CATG	4 cut(s)	108, 248, 305, 407
CviQI	GTAC	2 cut(s)	346, 615
DdeI	CTNAG	3 cut(s)	216, 258, 518
DpnI	GATC	2 cut(s)	437, 574
DpnII	GATC	2 cut(s)	435, 572
Eco130I	CCWWGG	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	143
Eco91I	GGTNACC	1 cut(s)	81
EcoO65I	GGTNACC	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	406
FaeI	CATG	4 cut(s)	111, 251, 308, 410
FatI	CATG	4 cut(s)	107, 247, 304, 406
FbaI	TGATCA	1 cut(s)	435
Fnu4HI	GCNGC	3 cut(s)	186, 399, 609
FokI	GGATG	2 cut(s)	19, 344
FriOI	GRGCYC	1 cut(s)	473
Fsp4HI	GCNGC	3 cut(s)	186, 399, 609
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	3 cut(s)	186, 399, 609
HaeIII	GGCC	1 cut(s)	546
Hin1II	CATG	4 cut(s)	111, 251, 308, 410
HinfI	GANTC	4 cut(s)	74, 167, 273, 514
HphI	GGTGA	2 cut(s)	75, 445
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	3 cut(s)	43, 219, 269
Hpy188III	TCNNGA	4 cut(s)	145, 248, 260, 576
Hpy8I	GTNNAC	1 cut(s)	255
HpyCH4V	TGCA	4 cut(s)	50, 379, 599, 608
HpyF10VI	GCNNNNNNNGC	5 cut(s)	148, 191, 200, 229, 605
HpyF3I	CTNAG	3 cut(s)	216, 258, 518
Hsp92II	CATG	4 cut(s)	111, 251, 308, 410
Ksp22I	TGATCA	1 cut(s)	435
Kzo9I	GATC	2 cut(s)	435, 572
LmnI	GCTCC	1 cut(s)	310
Lsp1109I	GCAGC	3 cut(s)	172, 385, 620
LweI	GCATC	2 cut(s)	47, 362
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	3 cut(s)	81, 211, 521
MalI	GATC	2 cut(s)	437, 574
MboI	GATC	2 cut(s)	435, 572
MboII	GAAGA	1 cut(s)	523
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	4 cut(s)	31, 289, 558, 585
MnlI	CCTC	3 cut(s)	291, 424, 561
MseI	TTAA	1 cut(s)	561
MslI	CAYNNNNRTG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	381
MwoI	GCNNNNNNNGC	5 cut(s)	148, 191, 200, 229, 605
NcoI	CCATGG	1 cut(s)	406
NdeII	GATC	2 cut(s)	435, 572
NheI	GCTAGC	1 cut(s)	223
NlaIII	CATG	4 cut(s)	111, 251, 308, 410
NlaIV	GGNNCC	1 cut(s)	97
NmuCI	GTSAC	2 cut(s)	81, 521
NspI	RCATGY	1 cut(s)	308
PaeR7I	CTCGAG	1 cut(s)	143
PagI	TCATGA	1 cut(s)	247
PctI	GAATGC	1 cut(s)	381
PfeI	GAWTC	4 cut(s)	74, 167, 273, 514
PflMI	CCANNNNNTGG	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	187, 400, 610
PspEI	GGTNACC	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	97
PspPI	GGNCC	1 cut(s)	96
PstI	CTGCAG	1 cut(s)	601
RsaI	GTAC	2 cut(s)	347, 616
RsaNI	GTAC	2 cut(s)	346, 615
RseI	CAYNNNNRTG	1 cut(s)	426
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	3 cut(s)	186, 399, 609
Sau3AI	GATC	2 cut(s)	435, 572
Sau96I	GGNCC	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	473
SfaNI	GCATC	2 cut(s)	47, 362
SfcI	CTRYAG	1 cut(s)	597
Sfr274I	CTCGAG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	96
SlaI	CTCGAG	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	4 cut(s)	31, 289, 558, 585
SsiI	CCGC	1 cut(s)	308
SspMI	CTAG	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	406
TaqI	TCGA	1 cut(s)	144
TasI	AATT	4 cut(s)	31, 289, 558, 585
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	4 cut(s)	74, 167, 273, 514
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TseFI	GTSAC	2 cut(s)	81, 521
TseI	GCWGC	3 cut(s)	185, 398, 608
Tsp45I	GTSAC	2 cut(s)	81, 521
TspDTI	ATGAA	2 cut(s)	236, 282
TspGWI	ACGGA	1 cut(s)	530
Van91I	CCANNNNNTGG	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	96
XapI	RAATTY	1 cut(s)	289
XceI	RCATGY	1 cut(s)	308
XhoI	CTCGAG	1 cut(s)	143
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.