Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0011092

Physical Location & Seq

Genomic Coordinates Reverse (-)

44714437 .. 44719744

Gene Structure 5308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG205900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGACGGATTCGAGTCTGGAGCTACAGGAATCGGGGTGGGAGGAGCTGAGGAGAGAGGCCCGCAAGATCGAGGGAGATCTTGACGTCAAGCTTTCTTCTTATGCTAAACTCGGAGCTCGGTTCACACAAGGAGGAGGTTATGTGGAATCTGGGTCACCACCTGTTGGGTCCAGCAGGTCATGGAAGTCTATGGAAATGGAAATCCAGTCTTTGCTCGAGAAGCTATTGGATATAAATGATTCAATGAGCCGATGTGCTGCTTCTGCTACACCAGCTACTTCTGTTACTCAGAAGCTAGCAAGGCATAGAGACATACTTCATGAGTTTACTCAGGAGTTCAGACGAATCAAAGGGAACATAAATTCATTGAGGGAACATGCGGAGCTTCTAACTTCTGTCAGGGATGACATTAGCGAGTACAAGGCATCTGGGAGTATGTCTCCAAGAATGCAAATACTACGGGAGAGAGCTGCTATCCATGGAAGTGTATCTCATGTAAGTTTAAGTGCTATTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005794 GO:0005795 GO:0005797 GO:0005801 GO:0005802 GO:0005829 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031201 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032879 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048209 GO:0048284 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0097305 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

172

Amino Acids

19.13

Weight (kDa)

6.53

Isoelectric Point (pI)

60.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45200 AT2G45200
fragaria_vesca	FvH4_7g11270
malus_domestica	MD02G1205800.v1.1 MD07G1117300.v1.1
prunus_persica	Prupe.2G140500_v2.0.a1 Prupe.2G140500_v2.0.a1
pyrus_communis	pycom02g17040 pycom07g10740
rosa_chinensis	RchiOBHm_Chr1g0349411
rosa_laevigata	RLG00000028551
rosa_multiflora	Rmu_sc0002495.1_g000004
rosa_roxburghii	Rroxscaffold_4G00305560
rosa_rugosa	Rorug01G0203500 Rorug01G0203600.1
rosa_samantha	Rh1AG220900 Rh1BG187000 Rh1CG205900 Rh1DG216300
rosa_wichuraiana	Rw1G018770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
Acc36I	ACCTGC	1 cut(s)	165
AccB7I	CCANNNNNTGG	1 cut(s)	164
AciI	CCGC	2 cut(s)	61, 380
AcsI	RAATTY	1 cut(s)	361
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	243
AluBI	AGCT	9 cut(s)	22, 46, 91, 116, 223, 275, 295, 385, 470
AluI	AGCT	9 cut(s)	22, 46, 91, 116, 223, 275, 295, 385, 470
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	2 cut(s)	303, 444
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	2 cut(s)	257, 470
ApoI	RAATTY	1 cut(s)	361
AspS9I	GGNCC	2 cut(s)	58, 168
AsuHPI	GGTGA	1 cut(s)	147
AsuNHI	GCTAGC	1 cut(s)	295
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	118
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	244, 457
BcoDI	GTCTC	2 cut(s)	303, 444
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	165
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	2 cut(s)	258, 471
BlsI	GCNGC	2 cut(s)	259, 472
Bme18I	GGWCC	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	2 cut(s)	58, 168
BmiI	GGNNCC	1 cut(s)	169
BmsI	GCATC	1 cut(s)	434
BmtI	GCTAGC	1 cut(s)	299
BplI	GAGNNNNNCTC	2 cut(s)	424, 456
BpmI	CTGGAG	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	478
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	478
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	3 cut(s)	38, 302, 344
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	3 cut(s)	56, 64, 147
BseXI	GCAGC	2 cut(s)	244, 457
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	2 cut(s)	303, 444
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	2 cut(s)	66, 76
Bsp19I	CCATGG	1 cut(s)	478
BspACI	CCGC	2 cut(s)	61, 380
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	3 cut(s)	39, 301, 343
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	165
BspOI	GCTAGC	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	478
BssMI	GATC	2 cut(s)	66, 76
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	478
BstACI	GRCGYC	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	61, 297
BstDEI	CTNAG	3 cut(s)	47, 288, 330
BstDSI	CCRYGG	1 cut(s)	478
BstEII	GGTNACC	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	2 cut(s)	69, 79
BstMAI	GTCTC	2 cut(s)	303, 444
BstMBI	GATC	2 cut(s)	66, 76
BstMWI	GCNNNNNNNGC	4 cut(s)	220, 263, 272, 301
BstNSI	RCATGY	1 cut(s)	380
BstPI	GGTNACC	1 cut(s)	153
BstSFI	CTRYAG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	244, 457
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	59
BtgI	CCRYGG	1 cut(s)	478
BtsCI	GGATG	1 cut(s)	409
BveI	ACCTGC	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	61, 297
CciI	TCATGA	1 cut(s)	319
Cfr13I	GGNCC	2 cut(s)	58, 168
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	5 cut(s)	180, 320, 377, 479, 494
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	3 cut(s)	47, 288, 330
DpnI	GATC	2 cut(s)	68, 78
DpnII	GATC	2 cut(s)	66, 76
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	478
Eco24I	GRGCYC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	116
Eco88I	CYCGRG	1 cut(s)	215
Eco91I	GGTNACC	1 cut(s)	153
EcoICRI	GAGCTC	1 cut(s)	116
EcoO65I	GGTNACC	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	478
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	478
FaeI	CATG	5 cut(s)	183, 323, 380, 482, 497
FatI	CATG	5 cut(s)	179, 319, 376, 478, 493
FauI	CCCGC	1 cut(s)	68
Fnu4HI	GCNGC	2 cut(s)	258, 471
FokI	GGATG	1 cut(s)	416
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	2 cut(s)	258, 471
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	2 cut(s)	258, 471
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	5 cut(s)	183, 323, 380, 482, 497
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	6 cut(s)	8, 13, 29, 146, 239, 345
HphI	GGTGA	1 cut(s)	147
Hpy166II	GTNNAC	2 cut(s)	123, 327
Hpy188I	TCNGA	3 cut(s)	113, 291, 341
Hpy188III	TCNNGA	5 cut(s)	17, 80, 217, 320, 332
Hpy8I	GTNNAC	2 cut(s)	123, 327
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	1 cut(s)	451
HpyF10VI	GCNNNNNNNGC	4 cut(s)	220, 263, 272, 301
HpyF3I	CTNAG	3 cut(s)	47, 288, 330
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	5 cut(s)	183, 323, 380, 482, 497
Kzo9I	GATC	2 cut(s)	66, 76
LmnI	GCTCC	4 cut(s)	19, 43, 113, 382
Lsp1109I	GCAGC	2 cut(s)	244, 457
LweI	GCATC	1 cut(s)	434
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	153, 283
MalI	GATC	2 cut(s)	68, 78
MboI	GATC	2 cut(s)	66, 76
MboII	GAAGA	1 cut(s)	87
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	1 cut(s)	361
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	7 cut(s)	34, 42, 49, 64, 125, 128, 363
MseI	TTAA	2 cut(s)	503, 517
MslI	CAYNNNNRTG	1 cut(s)	483
Mva1269I	GAATGC	1 cut(s)	453
MwoI	GCNNNNNNNGC	4 cut(s)	220, 263, 272, 301
NcoI	CCATGG	1 cut(s)	478
NdeII	GATC	2 cut(s)	66, 76
NheI	GCTAGC	1 cut(s)	295
NlaIII	CATG	5 cut(s)	183, 323, 380, 482, 497
NlaIV	GGNNCC	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	153
NspI	RCATGY	1 cut(s)	380
PaeR7I	CTCGAG	1 cut(s)	215
PagI	TCATGA	1 cut(s)	319
PctI	GAATGC	1 cut(s)	453
PfeI	GAWTC	5 cut(s)	8, 29, 146, 239, 345
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	259, 472
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	118
PspEI	GGTNACC	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	2 cut(s)	58, 168
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
RseI	CAYNNNNRTG	1 cut(s)	483
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	503, 517
SatI	GCNGC	2 cut(s)	258, 471
Sau3AI	GATC	2 cut(s)	66, 76
Sau96I	GGNCC	2 cut(s)	58, 168
SchI	GAGTC	1 cut(s)	22
SduI	GDGCHC	1 cut(s)	118
SfaNI	GCATC	1 cut(s)	434
SfcI	CTRYAG	1 cut(s)	23
Sfr274I	CTCGAG	1 cut(s)	215
SinI	GGWCC	1 cut(s)	168
SlaI	CTCGAG	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	1 cut(s)	361
SsiI	CCGC	2 cut(s)	61, 380
SspMI	CTAG	1 cut(s)	296
SstI	GAGCTC	1 cut(s)	118
StyI	CCWWGG	1 cut(s)	478
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	3 cut(s)	11, 69, 216
TasI	AATT	1 cut(s)	361
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	5 cut(s)	8, 29, 146, 239, 345
Tru1I	TTAA	2 cut(s)	503, 517
Tru9I	TTAA	2 cut(s)	503, 517
TseFI	GTSAC	1 cut(s)	153
TseI	GCWGC	2 cut(s)	257, 470
Tsp45I	GTSAC	1 cut(s)	153
TspDTI	ATGAA	2 cut(s)	308, 354
TspGWI	ACGGA	1 cut(s)	20
Van91I	CCANNNNNTGG	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	168
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	1 cut(s)	380
XhoI	CTCGAG	1 cut(s)	215
XspI	CTAG	1 cut(s)	296
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.