Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011092

Physical Location & Seq

Genomic Coordinates Reverse (-)

19717692 .. 19722294

Gene Structure 4603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G140500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGACGACAGATTCGAATCTGGAGTTGCAGGAATCGGGTTGGGAGGAGCTGAGGAGAGAGGCCAGGAAGATCGAGGGAGATCTTGATGTGAAGCTCTCTTCTTATGCTAAGCTCGGTGCTAGGTTCACACAAGGAGGTTACGTGGAATCTGGGTCACCTTCTGTCGGGTCCAGTAGGTCATGGAAGTCCATGGAAATGGAAATCCAATCTTTGCTCGAGAAGCTCTTGGACATAAATGATTCAATGAGTCGATGTGCTGCTTCTGCTACACCAGCTACGTCTGTGACTCAGAAGCTAGCAAGGCACAGAGACATACTTCATGAGTTTACCCAGGAGTTCAGAAGAATCAAGGGGAACATAAATTCATTGAGGGAACATGCAGAGCTTCTGACTTCAGTCAGAGATGATATCAGTGAGTACAAGGCATCTGGGAGTATGTCACCAAGAATGCAGATACTACGGGAGAGAGCTGCAATCCATGGAAGCGTATCTCATATAGATGAGGTGATTAGTCAGGCTCAAACGACAAGGGCAGTGTTGGGCTCTCAAAGGGCTTTGTTTGGAGATGTTCAAGGGAAAGTGAAAAATCTAAGTGACAAGTTCCCTATTATCCGTGGCCTACTTGGTTCAATTAGAAGGCGGCGATCAAGAGACACCCTTATTCTCGCTGCAGTCATTGCAGCTTGTACCTTGTTTCTTATTATCTATTGGCTTTCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005794 GO:0005795 GO:0005797 GO:0005801 GO:0005802 GO:0005829 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031201 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032879 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048209 GO:0048284 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0097305 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

241

Amino Acids

26.84

Weight (kDa)

9.44

Isoelectric Point (pI)

59.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45200 AT2G45200
fragaria_vesca	FvH4_7g11270
malus_domestica	MD02G1205800.v1.1 MD07G1117300.v1.1
prunus_persica	Prupe.2G140500_v2.0.a1 Prupe.2G140500_v2.0.a1
pyrus_communis	pycom02g17040 pycom07g10740
rosa_chinensis	RchiOBHm_Chr1g0349411
rosa_laevigata	RLG00000028551
rosa_multiflora	Rmu_sc0002495.1_g000004
rosa_roxburghii	Rroxscaffold_4G00305560
rosa_rugosa	Rorug01G0203500 Rorug01G0203600.1
rosa_samantha	Rh1AG220900 Rh1BG187000 Rh1CG205900 Rh1DG216300
rosa_wichuraiana	Rw1G018770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	640
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	2 cut(s)	419, 688
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	4 cut(s)	243, 572, 630, 717
AjnI	CCWGG	2 cut(s)	62, 330
AluBI	AGCT	9 cut(s)	49, 94, 112, 223, 275, 295, 385, 470, 683
AluI	AGCT	9 cut(s)	49, 94, 112, 223, 275, 295, 385, 470, 683
Alw26I	GTCTC	2 cut(s)	303, 645
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	2 cut(s)	60, 616
ApeKI	GCWGC	4 cut(s)	257, 470, 668, 680
ApoI	RAATTY	1 cut(s)	361
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	168
AsuHPI	GGTGA	3 cut(s)	147, 432, 517
AsuII	TTCGAA	1 cut(s)	14
AsuNHI	GCTAGC	1 cut(s)	295
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	545
BbvCI	CCTCAGC	1 cut(s)	50
BbvI	GCAGC	4 cut(s)	244, 457, 655, 692
BciT130I	CCWGG	2 cut(s)	64, 332
BcoDI	GTCTC	2 cut(s)	303, 645
BfaI	CTAG	2 cut(s)	120, 296
BfmI	CTRYAG	1 cut(s)	669
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	5 cut(s)	258, 471, 641, 669, 681
BlpI	GCTNAGC	1 cut(s)	108
BlsI	GCNGC	5 cut(s)	259, 472, 642, 670, 682
Bme1390I	CCNGG	2 cut(s)	64, 332
Bme18I	GGWCC	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	2 cut(s)	64, 332
BmsI	GCATC	1 cut(s)	434
BmtI	GCTAGC	1 cut(s)	299
BoxI	GACNNNNGTC	1 cut(s)	395
BpmI	CTGGAG	1 cut(s)	41
Bpu10I	CCTNAGC	1 cut(s)	50
Bpu1102I	GCTNAGC	1 cut(s)	108
Bpu14I	TTCGAA	1 cut(s)	14
BsaAI	YACGTR	1 cut(s)	142
BsaBI	GATNNNNATC	1 cut(s)	15
BsaJI	CCNNGG	4 cut(s)	189, 330, 478, 613
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	675
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	2 cut(s)	64, 332
BseDI	CCNNGG	4 cut(s)	189, 330, 478, 613
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	2 cut(s)	41, 302
BseNI	ACTGG	1 cut(s)	171
BseRI	GAGGAG	2 cut(s)	59, 67
BseXI	GCAGC	4 cut(s)	244, 457, 655, 692
BshFI	GGCC	2 cut(s)	62, 618
BsiHKCI	CYCGRG	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	2 cut(s)	303, 645
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	2 cut(s)	62, 618
BsoBI	CYCGRG	1 cut(s)	215
Bsp119I	TTCGAA	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	545
Bsp143I	GATC	3 cut(s)	69, 79, 644
Bsp1720I	GCTNAGC	1 cut(s)	108
Bsp19I	CCATGG	2 cut(s)	189, 478
BspACI	CCGC	1 cut(s)	640
BspANI	GGCC	2 cut(s)	62, 618
BspCNI	CTCAG	2 cut(s)	42, 301
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	169
BspMAI	CTGCAG	1 cut(s)	673
BspOI	GCTAGC	1 cut(s)	299
BspT104I	TTCGAA	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	675
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	4 cut(s)	189, 330, 478, 613
BssMI	GATC	3 cut(s)	69, 79, 644
BssT1I	CCWWGG	2 cut(s)	189, 478
Bst2UI	CCWGG	2 cut(s)	64, 332
Bst6I	CTCTTC	1 cut(s)	103
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstBAI	YACGTR	1 cut(s)	142
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	4 cut(s)	50, 108, 288, 590
BstDSI	CCRYGG	3 cut(s)	189, 478, 613
BstEII	GGTNACC	1 cut(s)	153
BstKTI	GATC	3 cut(s)	72, 82, 647
BstMAI	GTCTC	2 cut(s)	303, 645
BstMBI	GATC	3 cut(s)	69, 79, 644
BstMWI	GCNNNNNNNGC	5 cut(s)	220, 263, 272, 301, 677
BstNI	CCWGG	2 cut(s)	64, 332
BstNSI	RCATGY	1 cut(s)	380
BstPAI	GACNNNNGTC	1 cut(s)	395
BstPI	GGTNACC	1 cut(s)	153
BstSCI	CCNGG	2 cut(s)	62, 330
BstSFI	CTRYAG	1 cut(s)	669
BstV1I	GCAGC	4 cut(s)	244, 457, 655, 692
BstX2I	RGATCY	1 cut(s)	79
BstXI	CCANNNNNNTGG	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	2 cut(s)	62, 618
BtgI	CCRYGG	3 cut(s)	189, 478, 613
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	2 cut(s)	418, 540
Cac8I	GCNNGC	1 cut(s)	297
CciI	TCATGA	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	168
Csp6I	GTAC	2 cut(s)	418, 687
CviAII	CATG	5 cut(s)	180, 190, 320, 377, 479
CviQI	GTAC	2 cut(s)	418, 687
DdeI	CTNAG	4 cut(s)	50, 108, 288, 590
DpnI	GATC	3 cut(s)	71, 81, 646
DpnII	GATC	3 cut(s)	69, 79, 644
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	189, 478
Eco24I	GRGCYC	1 cut(s)	545
Eco32I	GATATC	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	378
Eco88I	CYCGRG	1 cut(s)	215
Eco91I	GGTNACC	1 cut(s)	153
EcoO65I	GGTNACC	1 cut(s)	153
EcoRII	CCWGG	2 cut(s)	62, 330
EcoRV	GATATC	1 cut(s)	409
EcoT14I	CCWWGG	2 cut(s)	189, 478
EcoT38I	GRGCYC	1 cut(s)	545
ErhI	CCWWGG	2 cut(s)	189, 478
FaeI	CATG	5 cut(s)	183, 193, 323, 380, 482
FatI	CATG	5 cut(s)	179, 189, 319, 376, 478
Fnu4HI	GCNGC	5 cut(s)	258, 471, 641, 669, 681
FriOI	GRGCYC	1 cut(s)	545
Fsp4HI	GCNGC	5 cut(s)	258, 471, 641, 669, 681
FspBI	CTAG	2 cut(s)	120, 296
GluI	GCNGC	5 cut(s)	258, 471, 641, 669, 681
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	62, 618
Hin1II	CATG	5 cut(s)	183, 193, 323, 380, 482
HinfI	GANTC	8 cut(s)	11, 16, 32, 146, 239, 247, 286, 345
HphI	GGTGA	3 cut(s)	147, 432, 517
Hpy166II	GTNNAC	2 cut(s)	126, 327
Hpy188I	TCNGA	4 cut(s)	291, 341, 390, 401
Hpy188III	TCNNGA	5 cut(s)	20, 83, 217, 320, 648
Hpy8I	GTNNAC	2 cut(s)	126, 327
HpyAV	CCTTC	2 cut(s)	168, 630
HpyCH4IV	ACGT	2 cut(s)	141, 278
HpyCH4V	TGCA	6 cut(s)	28, 380, 451, 473, 671, 680
HpyF10VI	GCNNNNNNNGC	5 cut(s)	220, 263, 272, 301, 677
HpyF3I	CTNAG	4 cut(s)	50, 108, 288, 590
HpySE526I	ACGT	2 cut(s)	141, 278
Hsp92II	CATG	5 cut(s)	183, 193, 323, 380, 482
Kzo9I	GATC	3 cut(s)	69, 79, 644
LmnI	GCTCC	1 cut(s)	46
Lsp1109I	GCAGC	4 cut(s)	244, 457, 655, 692
LweI	GCATC	1 cut(s)	434
MaeI	CTAG	2 cut(s)	120, 296
MaeII	ACGT	2 cut(s)	141, 278
MaeIII	GTNAC	5 cut(s)	137, 153, 283, 438, 593
MalI	GATC	3 cut(s)	71, 81, 646
MboI	GATC	3 cut(s)	69, 79, 644
MboII	GAAGA	3 cut(s)	79, 90, 354
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	545
MluCI	AATT	2 cut(s)	361, 630
MlyI	GAGTC	2 cut(s)	256, 280
MnlI	CCTC	7 cut(s)	37, 45, 52, 67, 128, 363, 496
MslI	CAYNNNNRTG	2 cut(s)	194, 498
MspR9I	CCNGG	2 cut(s)	64, 332
Mva1269I	GAATGC	1 cut(s)	453
MvaI	CCWGG	2 cut(s)	64, 332
MwoI	GCNNNNNNNGC	5 cut(s)	220, 263, 272, 301, 677
NcoI	CCATGG	2 cut(s)	189, 478
NdeII	GATC	3 cut(s)	69, 79, 644
NheI	GCTAGC	1 cut(s)	295
NlaIII	CATG	5 cut(s)	183, 193, 323, 380, 482
NlaIV	GGNNCC	1 cut(s)	169
NmuCI	GTSAC	4 cut(s)	153, 283, 438, 593
NspI	RCATGY	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	14
PaeR7I	CTCGAG	1 cut(s)	215
PagI	TCATGA	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PctI	GAATGC	1 cut(s)	453
PfeI	GAWTC	6 cut(s)	11, 16, 32, 146, 239, 345
PkrI	GCNGC	5 cut(s)	259, 472, 642, 670, 682
PleI	GAGTC	2 cut(s)	255, 280
PpsI	GAGTC	2 cut(s)	255, 280
Ppu21I	YACGTR	1 cut(s)	142
PshAI	GACNNNNGTC	1 cut(s)	395
Psp6I	CCWGG	2 cut(s)	62, 330
PspEI	GGTNACC	1 cut(s)	153
PspGI	CCWGG	2 cut(s)	62, 330
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	168
PstI	CTGCAG	1 cut(s)	673
PsuI	RGATCY	1 cut(s)	79
RsaI	GTAC	2 cut(s)	419, 688
RsaNI	GTAC	2 cut(s)	418, 687
RseI	CAYNNNNRTG	2 cut(s)	194, 498
SatI	GCNGC	5 cut(s)	258, 471, 641, 669, 681
Sau3AI	GATC	3 cut(s)	69, 79, 644
Sau96I	GGNCC	1 cut(s)	168
SchI	GAGTC	2 cut(s)	256, 280
ScrFI	CCNGG	2 cut(s)	64, 332
SduI	GDGCHC	1 cut(s)	545
SfaNI	GCATC	1 cut(s)	434
SfcI	CTRYAG	1 cut(s)	669
Sfr274I	CTCGAG	1 cut(s)	215
SfuI	TTCGAA	1 cut(s)	14
SinI	GGWCC	1 cut(s)	168
SlaI	CTCGAG	1 cut(s)	215
SmiMI	CAYNNNNRTG	2 cut(s)	194, 498
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	2 cut(s)	361, 630
SsiI	CCGC	1 cut(s)	640
SspMI	CTAG	2 cut(s)	120, 296
StyD4I	CCNGG	2 cut(s)	62, 330
StyI	CCWWGG	2 cut(s)	189, 478
TaiI	ACGT	2 cut(s)	144, 281
TaqI	TCGA	4 cut(s)	14, 72, 216, 250
TasI	AATT	2 cut(s)	361, 630
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	1 cut(s)	643
TfiI	GAWTC	6 cut(s)	11, 16, 32, 146, 239, 345
TscAI	CASTG	2 cut(s)	418, 540
TseFI	GTSAC	4 cut(s)	153, 283, 438, 593
TseI	GCWGC	4 cut(s)	257, 470, 668, 680
Tsp45I	GTSAC	4 cut(s)	153, 283, 438, 593
TspDTI	ATGAA	2 cut(s)	308, 354
TspGWI	ACGGA	1 cut(s)	602
TspRI	CASTG	2 cut(s)	418, 540
VpaK11BI	GGWCC	1 cut(s)	168
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	1 cut(s)	380
XhoI	CTCGAG	1 cut(s)	215
XspI	CTAG	2 cut(s)	120, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.