Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011092

Physical Location & Seq

Genomic Coordinates Forward (+)

26215270 .. 26219817

Gene Structure 4548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00305560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGACGGATTTGAATCTGGAGCTACAGGAATCGGGGTGGGAGGAGCTGAGGAGAGAGGCCCGCAAGATCGAGGGAGATCTTGACGTCAAGCTTTCTTCTTATGCTAAACTCGGAGCTCGGTTCACACAAGGAGGAGGTTATGTGGAATCTGGGTCACCACCTGTTGGGTCCAGCAGGTCATGGAAGTCTATGGAAATGGAAATCCAGTCTTTGCTCGAGAAGCTATTGGATATAAATGATTCAATGAGCCGATGTGCTGCTTCTGCTACACCAGCTACTTCTGTTACTCAGAAGCTAGCAAGGCATAGAGATATACTTCATGAGTTTACTCAGGAGTTCAGACGAATCAAAGGGAACATAAATTCATTGAGGGAACATGCAGAGCTTCTAACTTCTGTCAGGGATGACATTAGCGAGTACAAGGCATCTGGGAGTATGTCTCCAAGAATGCAAATACTACGGGAGAGAGCTGCTATCCATGGAAGTGTATCTCATATAGATGAGGTGATCAGTCAGGCTCAAACAACAAGGGCAGTCTTGGGCTCTCAAAGGGCGTTGTTTGGAGATGTTCAAGGCAAAGTGAAGAATCTAAGTGACAAGTTCCCTGTTATCCGTGGCCTACTTGGTACTATACTATATTATACCATTTCTGGTTCAGTTTCATTTCTGATCCACCATATTATTCATTTGCTTTCTACTGCTCACAGGTTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005794 GO:0005795 GO:0005797 GO:0005801 GO:0005802 GO:0005829 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031201 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032879 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048209 GO:0048284 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0097305 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

238

Amino Acids

26.55

Weight (kDa)

8.67

Isoelectric Point (pI)

51.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE_C	PF12352	151 - 211	7.6e-14	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45200 AT2G45200
fragaria_vesca	FvH4_7g11270
malus_domestica	MD02G1205800.v1.1 MD07G1117300.v1.1
prunus_persica	Prupe.2G140500_v2.0.a1 Prupe.2G140500_v2.0.a1
pyrus_communis	pycom02g17040 pycom07g10740
rosa_chinensis	RchiOBHm_Chr1g0349411
rosa_laevigata	RLG00000028551
rosa_multiflora	Rmu_sc0002495.1_g000004
rosa_roxburghii	Rroxscaffold_4G00305560
rosa_rugosa	Rorug01G0203500 Rorug01G0203600.1
rosa_samantha	Rh1AG220900 Rh1BG187000 Rh1CG205900 Rh1DG216300
rosa_wichuraiana	Rw1G018770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
Acc36I	ACCTGC	1 cut(s)	165
AccB7I	CCANNNNNTGG	1 cut(s)	164
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	1 cut(s)	664
AcsI	RAATTY	1 cut(s)	361
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	2 cut(s)	419, 628
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	4 cut(s)	13, 243, 572, 712
AluBI	AGCT	9 cut(s)	22, 46, 91, 116, 223, 275, 295, 385, 470
AluI	AGCT	9 cut(s)	22, 46, 91, 116, 223, 275, 295, 385, 470
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	444
AlwI	GGATC	1 cut(s)	664
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	2 cut(s)	57, 616
ApeKI	GCWGC	2 cut(s)	257, 470
ApoI	RAATTY	1 cut(s)	361
AspS9I	GGNCC	2 cut(s)	58, 168
AsuHPI	GGTGA	2 cut(s)	147, 517
AsuNHI	GCTAGC	1 cut(s)	295
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	168
BanII	GRGCYC	2 cut(s)	118, 545
Bbv12I	GWGCWC	1 cut(s)	118
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	244, 457
BclI	TGATCA	1 cut(s)	507
BcoDI	GTCTC	1 cut(s)	444
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	165
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	2 cut(s)	258, 471
BlsI	GCNGC	2 cut(s)	259, 472
Bme18I	GGWCC	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	2 cut(s)	58, 168
BmiI	GGNNCC	1 cut(s)	169
BmsI	GCATC	1 cut(s)	434
BmtI	GCTAGC	1 cut(s)	299
BplI	GAGNNNNNCTC	2 cut(s)	424, 456
BpmI	CTGGAG	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	47
BsaBI	GATNNNNATC	1 cut(s)	12
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	478, 613
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	205
Bse8I	GATNNNNATC	1 cut(s)	12
BseDI	CCNNGG	2 cut(s)	478, 613
BseGI	GGATG	1 cut(s)	409
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	3 cut(s)	38, 302, 344
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	3 cut(s)	56, 64, 147
BseXI	GCAGC	2 cut(s)	244, 457
BshFI	GGCC	2 cut(s)	59, 618
BsiHKAI	GWGCWC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	444
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	2 cut(s)	59, 618
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	118, 545
Bsp143I	GATC	4 cut(s)	66, 76, 507, 669
Bsp19I	CCATGG	1 cut(s)	478
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	2 cut(s)	59, 618
BspCNI	CTCAG	3 cut(s)	39, 301, 343
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	165
BspOI	GCTAGC	1 cut(s)	299
BspPI	GGATC	1 cut(s)	664
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	478, 613
BssMI	GATC	4 cut(s)	66, 76, 507, 669
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	478
BstACI	GRCGYC	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	61, 297
BstDEI	CTNAG	4 cut(s)	47, 288, 330, 590
BstDSI	CCRYGG	2 cut(s)	478, 613
BstEII	GGTNACC	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	4 cut(s)	69, 79, 510, 672
BstMAI	GTCTC	1 cut(s)	444
BstMBI	GATC	4 cut(s)	66, 76, 507, 669
BstMWI	GCNNNNNNNGC	4 cut(s)	220, 263, 272, 301
BstNSI	RCATGY	1 cut(s)	380
BstPI	GGTNACC	1 cut(s)	153
BstSFI	CTRYAG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	244, 457
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BsuRI	GGCC	2 cut(s)	59, 618
BtgI	CCRYGG	2 cut(s)	478, 613
BtsCI	GGATG	1 cut(s)	409
BveI	ACCTGC	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	61, 297
CciI	TCATGA	1 cut(s)	319
Cfr13I	GGNCC	2 cut(s)	58, 168
Csp6I	GTAC	2 cut(s)	418, 627
CviAII	CATG	4 cut(s)	180, 320, 377, 479
CviQI	GTAC	2 cut(s)	418, 627
DdeI	CTNAG	4 cut(s)	47, 288, 330, 590
DpnI	GATC	4 cut(s)	68, 78, 509, 671
DpnII	GATC	4 cut(s)	66, 76, 507, 669
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	478
Eco24I	GRGCYC	2 cut(s)	118, 545
Eco47I	GGWCC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	116
Eco88I	CYCGRG	1 cut(s)	215
Eco91I	GGTNACC	1 cut(s)	153
EcoICRI	GAGCTC	1 cut(s)	116
EcoO65I	GGTNACC	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	478
EcoT38I	GRGCYC	2 cut(s)	118, 545
ErhI	CCWWGG	1 cut(s)	478
FaeI	CATG	4 cut(s)	183, 323, 380, 482
FatI	CATG	4 cut(s)	179, 319, 376, 478
FauI	CCCGC	1 cut(s)	68
FbaI	TGATCA	1 cut(s)	507
Fnu4HI	GCNGC	2 cut(s)	258, 471
FokI	GGATG	1 cut(s)	416
FriOI	GRGCYC	2 cut(s)	118, 545
Fsp4HI	GCNGC	2 cut(s)	258, 471
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	2 cut(s)	258, 471
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	59, 618
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	4 cut(s)	183, 323, 380, 482
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	6 cut(s)	13, 29, 146, 239, 345, 586
HphI	GGTGA	2 cut(s)	147, 517
Hpy166II	GTNNAC	2 cut(s)	123, 327
Hpy188I	TCNGA	4 cut(s)	113, 291, 341, 669
Hpy188III	TCNNGA	5 cut(s)	17, 80, 217, 320, 332
Hpy8I	GTNNAC	2 cut(s)	123, 327
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	2 cut(s)	380, 451
HpyF10VI	GCNNNNNNNGC	4 cut(s)	220, 263, 272, 301
HpyF3I	CTNAG	4 cut(s)	47, 288, 330, 590
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	4 cut(s)	183, 323, 380, 482
Ksp22I	TGATCA	1 cut(s)	507
Kzo9I	GATC	4 cut(s)	66, 76, 507, 669
LmnI	GCTCC	3 cut(s)	19, 43, 113
Lsp1109I	GCAGC	2 cut(s)	244, 457
LweI	GCATC	1 cut(s)	434
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	3 cut(s)	153, 283, 593
MalI	GATC	4 cut(s)	68, 78, 509, 671
MboI	GATC	4 cut(s)	66, 76, 507, 669
MboII	GAAGA	2 cut(s)	87, 595
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	2 cut(s)	118, 545
MluCI	AATT	2 cut(s)	361, 712
MnlI	CCTC	8 cut(s)	34, 42, 49, 64, 125, 128, 363, 496
MseI	TTAA	1 cut(s)	715
MslI	CAYNNNNRTG	2 cut(s)	483, 498
Mva1269I	GAATGC	1 cut(s)	453
MwoI	GCNNNNNNNGC	4 cut(s)	220, 263, 272, 301
NcoI	CCATGG	1 cut(s)	478
NdeII	GATC	4 cut(s)	66, 76, 507, 669
NheI	GCTAGC	1 cut(s)	295
NlaIII	CATG	4 cut(s)	183, 323, 380, 482
NlaIV	GGNNCC	1 cut(s)	169
NmuCI	GTSAC	2 cut(s)	153, 593
NspI	RCATGY	1 cut(s)	380
PaeR7I	CTCGAG	1 cut(s)	215
PagI	TCATGA	1 cut(s)	319
PctI	GAATGC	1 cut(s)	453
PfeI	GAWTC	6 cut(s)	13, 29, 146, 239, 345, 586
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	259, 472
Psp124BI	GAGCTC	1 cut(s)	118
PspEI	GGTNACC	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	2 cut(s)	58, 168
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	2 cut(s)	419, 628
RsaNI	GTAC	2 cut(s)	418, 627
RseI	CAYNNNNRTG	2 cut(s)	483, 498
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	715
SatI	GCNGC	2 cut(s)	258, 471
Sau3AI	GATC	4 cut(s)	66, 76, 507, 669
Sau96I	GGNCC	2 cut(s)	58, 168
SduI	GDGCHC	2 cut(s)	118, 545
SfaNI	GCATC	1 cut(s)	434
SfcI	CTRYAG	1 cut(s)	23
Sfr274I	CTCGAG	1 cut(s)	215
SinI	GGWCC	1 cut(s)	168
SlaI	CTCGAG	1 cut(s)	215
SmiMI	CAYNNNNRTG	2 cut(s)	483, 498
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	2 cut(s)	361, 712
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	296
SstI	GAGCTC	1 cut(s)	118
StyI	CCWWGG	1 cut(s)	478
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	2 cut(s)	69, 216
TasI	AATT	2 cut(s)	361, 712
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	6 cut(s)	13, 29, 146, 239, 345, 586
Tru1I	TTAA	1 cut(s)	715
Tru9I	TTAA	1 cut(s)	715
TseFI	GTSAC	2 cut(s)	153, 593
TseI	GCWGC	2 cut(s)	257, 470
Tsp45I	GTSAC	2 cut(s)	153, 593
TspDTI	ATGAA	4 cut(s)	308, 354, 651, 674
TspGWI	ACGGA	2 cut(s)	20, 602
Van91I	CCANNNNNTGG	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	168
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	1 cut(s)	380
XhoI	CTCGAG	1 cut(s)	215
XspI	CTAG	1 cut(s)	296
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.