Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0011092

Physical Location & Seq

Genomic Coordinates Forward (+)

14510853 .. 14515561

Gene Structure 4709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g17040.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGACGGATTCGAATCTGGAGTTGCAGGAATCGGGTTGGGAGGAGCTGAGGAGAGAGGCCAGGAAGATTGAGGGAGATCTTGATGTGAATCTCTCTTCTTACGCTAAGCTTGGTGCTAGGTTCACACAAGGTTATGTGGAATCTGGGTCACCATCTGTTAGTTCTAGCAGGTCATGGAAGTCCATGGAAATGGAGATCCAGTCGTTGCTTGAGAAACTTTTGGAAACAAATGATTCAATGAGTCGATGTGCTGCATCTGCTACACCAGCTACTTCTGTAACTCAGAAGCTAGCAAGGCACAGAGACATACTTCATGAGTTTACCCAGGAGTTTAGAAGAATCAAGGGGAACATAAATTCATTGAGGGAACATGCGGAGCTTCTGACTTCAGTCAGGGACGATATCAGTGAGTACAAAGCATCTGGGATTATGTCACCAAGAATGCAGATACTACGGGAAAGAGCTGCCATCCATGGAAGTGTATCGCATATAGATGAGGTGATTAGTCAAGCTCAAACAACACGAGCAGTCTTGGGCTCTCAAAGGGCTCTGTTTGGAGATGTTCAAGGGAAAGTGAAAAATCTAAGTGACAAGTTCCCTATAGTCCGTGGCCTACTCGGTTCAATTCGAAGGCGGCGATCAAGAGACACACTTATTTTGTCTGCAGTCATTGCAGCTTGTAGCTTGTTTCTTATTATCTACTGGCTTTCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005794 GO:0005795 GO:0005797 GO:0005801 GO:0005802 GO:0005829 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031201 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032879 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048209 GO:0048284 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0097305 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

239

Amino Acids

26.71

Weight (kDa)

9.32

Isoelectric Point (pI)

58.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45200 AT2G45200
fragaria_vesca	FvH4_7g11270
malus_domestica	MD02G1205800.v1.1 MD07G1117300.v1.1
prunus_persica	Prupe.2G140500_v2.0.a1 Prupe.2G140500_v2.0.a1
pyrus_communis	pycom02g17040 pycom07g10740
rosa_chinensis	RchiOBHm_Chr1g0349411
rosa_laevigata	RLG00000028551
rosa_multiflora	Rmu_sc0002495.1_g000004
rosa_roxburghii	Rroxscaffold_4G00305560
rosa_rugosa	Rorug01G0203500 Rorug01G0203600.1
rosa_samantha	Rh1AG220900 Rh1BG187000 Rh1CG205900 Rh1DG216300
rosa_wichuraiana	Rw1G018770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	159
AciI	CCGC	2 cut(s)	374, 634
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	372
AfaI	GTAC	1 cut(s)	413
AgsI	TTSAA	4 cut(s)	237, 566, 624, 711
AjnI	CCWGG	2 cut(s)	59, 324
AluBI	AGCT	9 cut(s)	46, 109, 269, 289, 379, 464, 512, 677, 684
AluI	AGCT	9 cut(s)	46, 109, 269, 289, 379, 464, 512, 677, 684
Alw26I	GTCTC	2 cut(s)	297, 639
AlwI	GGATC	1 cut(s)	190
AoxI	GGCC	2 cut(s)	57, 610
ApeKI	GCWGC	3 cut(s)	251, 464, 674
ApoI	RAATTY	1 cut(s)	355
AsuHPI	GGTGA	3 cut(s)	141, 426, 511
AsuII	TTCGAA	2 cut(s)	11, 628
AsuNHI	GCTAGC	1 cut(s)	289
BanII	GRGCYC	2 cut(s)	539, 550
BauI	CACGAG	1 cut(s)	522
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	3 cut(s)	238, 451, 686
BccI	CCATC	2 cut(s)	160, 476
BciT130I	CCWGG	2 cut(s)	61, 326
BcoDI	GTCTC	2 cut(s)	297, 639
BfaI	CTAG	3 cut(s)	117, 165, 290
BfmI	CTRYAG	2 cut(s)	600, 663
BfuAI	ACCTGC	1 cut(s)	159
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	4 cut(s)	252, 465, 635, 675
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	4 cut(s)	253, 466, 636, 676
Bme1390I	CCNGG	2 cut(s)	61, 326
BmrFI	CCNGG	2 cut(s)	61, 326
BmsI	GCATC	2 cut(s)	263, 428
BmtI	GCTAGC	1 cut(s)	293
BoxI	GACNNNNGTC	1 cut(s)	389
BpmI	CTGGAG	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	47
Bpu1102I	GCTNAGC	1 cut(s)	105
Bpu14I	TTCGAA	2 cut(s)	11, 628
BpuEI	CTTGAG	1 cut(s)	230
BsaBI	GATNNNNATC	2 cut(s)	12, 87
BsaJI	CCNNGG	4 cut(s)	183, 324, 472, 607
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bse1I	ACTGG	2 cut(s)	199, 707
Bse3DI	GCAATG	1 cut(s)	669
Bse8I	GATNNNNATC	2 cut(s)	12, 87
BseBI	CCWGG	2 cut(s)	61, 326
BseDI	CCNNGG	4 cut(s)	183, 324, 472, 607
BseGI	GGATG	1 cut(s)	468
BseJI	GATNNNNATC	2 cut(s)	12, 87
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	2 cut(s)	38, 296
BseNI	ACTGG	2 cut(s)	199, 707
BseRI	GAGGAG	2 cut(s)	56, 64
BseXI	GCAGC	3 cut(s)	238, 451, 686
BshFI	GGCC	2 cut(s)	59, 612
BslFI	GGGAC	1 cut(s)	410
BsmAI	GTCTC	2 cut(s)	297, 639
BsmFI	GGGAC	1 cut(s)	410
BsmI	GAATGC	1 cut(s)	447
BsnI	GGCC	2 cut(s)	59, 612
Bsp119I	TTCGAA	2 cut(s)	11, 628
Bsp1286I	GDGCHC	2 cut(s)	539, 550
Bsp143I	GATC	3 cut(s)	76, 195, 638
Bsp1720I	GCTNAGC	1 cut(s)	105
Bsp19I	CCATGG	2 cut(s)	183, 472
BspACI	CCGC	2 cut(s)	374, 634
BspANI	GGCC	2 cut(s)	59, 612
BspCNI	CTCAG	2 cut(s)	39, 295
BspHI	TCATGA	1 cut(s)	313
BspMAI	CTGCAG	1 cut(s)	667
BspMI	ACCTGC	1 cut(s)	159
BspOI	GCTAGC	1 cut(s)	293
BspPI	GGATC	1 cut(s)	190
BspT104I	TTCGAA	2 cut(s)	11, 628
BsrDI	GCAATG	1 cut(s)	669
BsrI	ACTGG	2 cut(s)	199, 707
BssECI	CCNNGG	4 cut(s)	183, 324, 472, 607
BssMI	GATC	3 cut(s)	76, 195, 638
BssSI	CACGAG	1 cut(s)	522
BssT1I	CCWWGG	2 cut(s)	183, 472
Bst2BI	CACGAG	1 cut(s)	522
Bst2UI	CCWGG	2 cut(s)	61, 326
Bst6I	CTCTTC	1 cut(s)	100
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstBI	TTCGAA	2 cut(s)	11, 628
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	4 cut(s)	47, 105, 282, 584
BstDSI	CCRYGG	3 cut(s)	183, 472, 607
BstEII	GGTNACC	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	468
BstKTI	GATC	3 cut(s)	79, 198, 641
BstMAI	GTCTC	2 cut(s)	297, 639
BstMBI	GATC	3 cut(s)	76, 195, 638
BstMWI	GCNNNNNNNGC	4 cut(s)	257, 266, 295, 671
BstNI	CCWGG	2 cut(s)	61, 326
BstNSI	RCATGY	1 cut(s)	374
BstPAI	GACNNNNGTC	1 cut(s)	389
BstPI	GGTNACC	1 cut(s)	147
BstSCI	CCNGG	2 cut(s)	59, 324
BstSFI	CTRYAG	2 cut(s)	600, 663
BstV1I	GCAGC	3 cut(s)	238, 451, 686
BstX2I	RGATCY	2 cut(s)	76, 195
BstXI	CCANNNNNNTGG	1 cut(s)	190
BstYI	RGATCY	2 cut(s)	76, 195
BsuRI	GGCC	2 cut(s)	59, 612
BtgI	CCRYGG	3 cut(s)	183, 472, 607
BtsCI	GGATG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	412
BveI	ACCTGC	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	291
CciI	TCATGA	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	5 cut(s)	174, 184, 314, 371, 473
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	4 cut(s)	47, 105, 282, 584
DpnI	GATC	3 cut(s)	78, 197, 640
DpnII	GATC	3 cut(s)	76, 195, 638
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Eco130I	CCWWGG	2 cut(s)	183, 472
Eco24I	GRGCYC	2 cut(s)	539, 550
Eco32I	GATATC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	372
Eco91I	GGTNACC	1 cut(s)	147
EcoO65I	GGTNACC	1 cut(s)	147
EcoRII	CCWGG	2 cut(s)	59, 324
EcoRV	GATATC	1 cut(s)	403
EcoT14I	CCWWGG	2 cut(s)	183, 472
EcoT38I	GRGCYC	2 cut(s)	539, 550
ErhI	CCWWGG	2 cut(s)	183, 472
FaeI	CATG	5 cut(s)	177, 187, 317, 374, 476
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	5 cut(s)	173, 183, 313, 370, 472
Fnu4HI	GCNGC	4 cut(s)	252, 465, 635, 675
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	2 cut(s)	539, 550
Fsp4HI	GCNGC	4 cut(s)	252, 465, 635, 675
FspBI	CTAG	3 cut(s)	117, 165, 290
GluI	GCNGC	4 cut(s)	252, 465, 635, 675
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	59, 612
Hin1II	CATG	5 cut(s)	177, 187, 317, 374, 476
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	8 cut(s)	8, 13, 29, 88, 140, 233, 241, 339
HphI	GGTGA	3 cut(s)	141, 426, 511
Hpy166II	GTNNAC	2 cut(s)	123, 321
Hpy188I	TCNGA	2 cut(s)	285, 384
Hpy188III	TCNNGA	4 cut(s)	17, 80, 314, 642
Hpy8I	GTNNAC	2 cut(s)	123, 321
HpyAV	CCTTC	1 cut(s)	624
HpyCH4V	TGCA	5 cut(s)	25, 254, 445, 665, 674
HpyF10VI	GCNNNNNNNGC	4 cut(s)	257, 266, 295, 671
HpyF3I	CTNAG	4 cut(s)	47, 105, 282, 584
Hsp92II	CATG	5 cut(s)	177, 187, 317, 374, 476
Kzo9I	GATC	3 cut(s)	76, 195, 638
LmnI	GCTCC	2 cut(s)	43, 376
Lsp1109I	GCAGC	3 cut(s)	238, 451, 686
LweI	GCATC	2 cut(s)	263, 428
MaeI	CTAG	3 cut(s)	117, 165, 290
MaeIII	GTNAC	4 cut(s)	147, 277, 432, 587
MalI	GATC	3 cut(s)	78, 197, 640
MboI	GATC	3 cut(s)	76, 195, 638
MboII	GAAGA	3 cut(s)	76, 87, 348
MflI	RGATCY	2 cut(s)	76, 195
MhlI	GDGCHC	2 cut(s)	539, 550
MluCI	AATT	2 cut(s)	355, 624
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	6 cut(s)	34, 42, 49, 64, 357, 490
MslI	CAYNNNNRTG	3 cut(s)	188, 477, 492
MspR9I	CCNGG	2 cut(s)	61, 326
Mva1269I	GAATGC	1 cut(s)	447
MvaI	CCWGG	2 cut(s)	61, 326
MwoI	GCNNNNNNNGC	4 cut(s)	257, 266, 295, 671
NcoI	CCATGG	2 cut(s)	183, 472
NdeII	GATC	3 cut(s)	76, 195, 638
NheI	GCTAGC	1 cut(s)	289
NlaIII	CATG	5 cut(s)	177, 187, 317, 374, 476
NmuCI	GTSAC	3 cut(s)	147, 432, 587
NspI	RCATGY	1 cut(s)	374
NspV	TTCGAA	2 cut(s)	11, 628
PagI	TCATGA	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	1 cut(s)	634
PctI	GAATGC	1 cut(s)	447
PfeI	GAWTC	7 cut(s)	8, 13, 29, 88, 140, 233, 339
PkrI	GCNGC	4 cut(s)	253, 466, 636, 676
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
PshAI	GACNNNNGTC	1 cut(s)	389
Psp6I	CCWGG	2 cut(s)	59, 324
PspEI	GGTNACC	1 cut(s)	147
PspGI	CCWGG	2 cut(s)	59, 324
PstI	CTGCAG	1 cut(s)	667
PsuI	RGATCY	2 cut(s)	76, 195
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
RseI	CAYNNNNRTG	3 cut(s)	188, 477, 492
SatI	GCNGC	4 cut(s)	252, 465, 635, 675
Sau3AI	GATC	3 cut(s)	76, 195, 638
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	2 cut(s)	61, 326
SduI	GDGCHC	2 cut(s)	539, 550
SfaNI	GCATC	2 cut(s)	263, 428
SfcI	CTRYAG	2 cut(s)	600, 663
SfuI	TTCGAA	2 cut(s)	11, 628
SmiMI	CAYNNNNRTG	3 cut(s)	188, 477, 492
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	2 cut(s)	355, 624
SsiI	CCGC	2 cut(s)	374, 634
SspMI	CTAG	3 cut(s)	117, 165, 290
StyD4I	CCNGG	2 cut(s)	59, 324
StyI	CCWWGG	2 cut(s)	183, 472
TaqI	TCGA	3 cut(s)	11, 244, 628
TasI	AATT	2 cut(s)	355, 624
TatI	WGTACW	1 cut(s)	411
TauI	GCSGC	1 cut(s)	637
TfiI	GAWTC	7 cut(s)	8, 13, 29, 88, 140, 233, 339
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	3 cut(s)	147, 432, 587
TseI	GCWGC	3 cut(s)	251, 464, 674
Tsp45I	GTSAC	3 cut(s)	147, 432, 587
TspDTI	ATGAA	2 cut(s)	302, 348
TspGWI	ACGGA	2 cut(s)	20, 596
TspRI	CASTG	1 cut(s)	412
XapI	RAATTY	1 cut(s)	355
XceI	RCATGY	1 cut(s)	374
XspI	CTAG	3 cut(s)	117, 165, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.