Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007307

Physical Location & Seq

Genomic Coordinates Reverse (-)

25558135 .. 25560022

Gene Structure 1888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1220100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGCAGACATGGACAAAGAATGCTTTGAGAGAGAAGTTGAAACATTATGGAGTAGATAGTGTTGAGGATTTGACAGTGGTTGAAGATACTAACAATGAGGGAATGAATCGGGGCTTTGCTTTTTTGGAATTTTCACCTTGTTCAGATGCCATGGATGCTTTTAAGCGACTTCAGAAAATAGATATTGTGTTTGGAGTTGATAGGCCTGCAAAAGTTTCTTTTGCAGATTCCTTCATTGATCCTGGTGATGAAATCATGGCACAGGTGAAAACTGTGTTTGTGGATGGCCTACATGCTTCATGGGATGAGGATCATGTTCGAGATTTTGTTAAGGAATATGGGAATGTTGAAAAGATTGAGCTTGCGCGTAACATGCCCTCTGCTAAGAGGAAAGATTTTGGTTTTGTTACATTTGACACTGATGAGGCTGCAGTTACATGTGCTAAAAGCATTAACAATGCAGAGCTAGGTGAAGGAGATAGCAAGGCGAAAGTCAGGGCGAGGTTATCAAGACCACTTCAGAGGGGTAAAGGAAGACATGTTGGACGCGAAGATTATCGATCTTCAAGGGGGGTTGGACGAGTTGTTAGGGGTTCATGGGGTCACCCAGCATCGCGCGGGTTAAGGGGAGTTGGAAGTCGAATTCCACCAGCCAGTGTAAAGAGGCCTGTTGAGCTAAGAGATAGACGCCCTATGATGTCGTCTTATCCACCAAGAGGCAGGCCTTTGCCTCCTCCAGCTAGGTCCTATGACAGGAGACCACCTGTTCCAGCTTACCCAAAGAGTAGCTTCAAGAGGGAATATAGTAGGCGCGAGGACCTTCCTCCTCCAAGGAGTAGAGCAGCCTCTGATTATGGATCAAGGGCTGTTCAAGAAAGACACCAATCGTACCTAGATGACTACACTCCGCGTGGTCCTGCCTACTCTGATCCACCGAGAAGTATCTCTCATACAGCAGGAAGGAGAGCTTATGTTGATGAAGGTTACGGACAGCGATATGAAAGGCATCCTCCCCCTCCTCCTCCAAGTTACCGTGAAGGGCGTGCACGTGAATATGACTATTTCTGGTTCAAAACGTCCCTACGCTGCACTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0007623 GO:0008150 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0030425 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0036477 GO:0042995 GO:0043005 GO:0043025 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045727 GO:0045934 GO:0048027 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070937 GO:0071204 GO:0080090 GO:0090365 GO:0090367 GO:0097159 GO:0097447 GO:0097458 GO:0120025 GO:0120038 GO:1901363 GO:1903311 GO:1903312 GO:1990635 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

366

Amino Acids

41.49

Weight (kDa)

9.66

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	92 - 157	1.1e-10	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44710 AT2G44710 AT2G44710 AT2G44710
fragaria_vesca	FvH4_7g09210
malus_domestica	MD02G1220100.v1.1 MD07G1096800.v1.1
prunus_persica	Prupe.2G120600_v2.0.a1 Prupe.2G120600_v2.0.a1 Prupe.2G120600_v2.0.a1 Prupe.2G120600_v2.0.a1
pyrus_communis	pycom02g18060 pycom07g07990
rosa_chinensis	RchiOBHm_Chr1g0345261
rosa_laevigata	RLG00000028843
rosa_multiflora	Rmu_sc0002329.1_g000009 Rmu_sc0003175.1_g000005 Rmu_sc0011244.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309150
rosa_rugosa	Rorug01G0177000
rosa_samantha	Rh1AG195100 Rh1BG161200 Rh1CG179500 Rh1DG191600
rosa_wichuraiana	Rw1G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	6 cut(s)	367, 549, 616, 618, 813, 910
AciI	CCGC	2 cut(s)	618, 908
AclWI	GGATC	4 cut(s)	233, 318, 865, 923
AcsI	RAATTY	2 cut(s)	128, 642
AcuI	CTGAAG	2 cut(s)	155, 503
AcvI	CACGTG	1 cut(s)	1049
AcyI	GRCGYC	1 cut(s)	688
AfaI	GTAC	1 cut(s)	890
AfiI	CCNNNNNNNGG	2 cut(s)	716, 753
AflIII	ACRYGT	2 cut(s)	437, 538
AgsI	TTSAA	7 cut(s)	40, 83, 350, 567, 793, 872, 1072
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	7 cut(s)	361, 466, 676, 740, 773, 789, 968
AluI	AGCT	7 cut(s)	361, 466, 676, 740, 773, 789, 968
Alw21I	GWGCWC	1 cut(s)	1048
Alw26I	GTCTC	1 cut(s)	751
Alw44I	GTGCAC	1 cut(s)	1044
AlwI	GGATC	4 cut(s)	233, 318, 865, 923
AlwNI	CAGNNNCTG	1 cut(s)	848
AoxI	GGCC	4 cut(s)	203, 286, 665, 722
ApaLI	GTGCAC	1 cut(s)	1044
ApeKI	GCWGC	3 cut(s)	428, 842, 1086
ApoI	RAATTY	2 cut(s)	128, 642
AspLEI	GCGC	3 cut(s)	367, 618, 813
AspS9I	GGNCC	3 cut(s)	744, 817, 914
AsuHPI	GGTGA	5 cut(s)	126, 257, 277, 482, 596
AvaII	GGWCC	3 cut(s)	744, 817, 914
BaeGI	GKGCMC	1 cut(s)	1048
BbrPI	CACGTG	1 cut(s)	1049
BbsI	GAAGAC	1 cut(s)	541
Bbv12I	GWGCWC	1 cut(s)	1048
BbvI	GCAGC	3 cut(s)	415, 854, 1073
BccI	CCATC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	751
BfaI	CTAG	3 cut(s)	467, 741, 893
BfmI	CTRYAG	1 cut(s)	429
BisI	GCNGC	3 cut(s)	429, 843, 1087
BlsI	GCNGC	3 cut(s)	430, 844, 1088
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	3 cut(s)	744, 817, 914
BmgT120I	GGNCC	3 cut(s)	744, 817, 914
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	4 cut(s)	136, 145, 620, 1015
BpiI	GAAGAC	1 cut(s)	541
BpmI	CTGGAG	1 cut(s)	720
Bsa29I	ATCGAT	1 cut(s)	559
BsaAI	YACGTR	1 cut(s)	1049
BsaBI	GATNNNNATC	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	688
BsaI	GGTCTC	1 cut(s)	751
BsaJI	CCNNGG	2 cut(s)	150, 830
Bsc4I	CCNNNNNNNGG	2 cut(s)	716, 753
Bse1I	ACTGG	2 cut(s)	654, 1096
Bse8I	GATNNNNATC	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	243
BseCI	ATCGAT	1 cut(s)	559
BseDI	CCNNGG	2 cut(s)	150, 830
BseGI	GGATG	4 cut(s)	160, 289, 310, 1006
BseJI	GATNNNNATC	1 cut(s)	309
BseLI	CCNNNNNNNGG	2 cut(s)	716, 753
BseNI	ACTGG	2 cut(s)	654, 1096
BseRI	GAGGAG	4 cut(s)	723, 816, 1008, 1011
BseSI	GKGCMC	1 cut(s)	1048
BseXI	GCAGC	3 cut(s)	415, 854, 1073
BseYI	CCCAGC	1 cut(s)	607
BsgI	GTGCAG	1 cut(s)	1072
Bsh1236I	CGCG	6 cut(s)	367, 549, 616, 618, 813, 910
BshFI	GGCC	4 cut(s)	205, 288, 667, 724
BshVI	ATCGAT	1 cut(s)	559
BsiHKAI	GWGCWC	1 cut(s)	1048
BslFI	GGGAC	1 cut(s)	1063
BslI	CCNNNNNNNGG	2 cut(s)	716, 753
BsmAI	GTCTC	1 cut(s)	751
BsmFI	GGGAC	1 cut(s)	1063
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	4 cut(s)	205, 288, 667, 724
Bso31I	GGTCTC	1 cut(s)	751
Bsp1286I	GDGCHC	1 cut(s)	1048
Bsp143I	GATC	5 cut(s)	238, 310, 560, 857, 928
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	2 cut(s)	618, 908
BspANI	GGCC	4 cut(s)	205, 288, 667, 724
BspDI	ATCGAT	1 cut(s)	559
BspFNI	CGCG	6 cut(s)	367, 549, 616, 618, 813, 910
BspMAI	CTGCAG	1 cut(s)	433
BspPI	GGATC	4 cut(s)	233, 318, 865, 923
BspTNI	GGTCTC	1 cut(s)	751
BsrI	ACTGG	2 cut(s)	654, 1096
BssECI	CCNNGG	2 cut(s)	150, 830
BssMI	GATC	5 cut(s)	238, 310, 560, 857, 928
BssNI	GRCGYC	1 cut(s)	688
BssT1I	CCWWGG	2 cut(s)	150, 830
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	3 cut(s)	76, 274, 1034
BstACI	GRCGYC	1 cut(s)	688
BstBAI	YACGTR	1 cut(s)	1049
BstC8I	GCNNGC	4 cut(s)	207, 363, 722, 1044
BstDEI	CTNAG	2 cut(s)	384, 677
BstDSI	CCRYGG	1 cut(s)	150
BstEII	GGTNACC	1 cut(s)	602
BstENI	CCTNNNNNAGG	1 cut(s)	751
BstF5I	GGATG	4 cut(s)	160, 289, 310, 1006
BstFNI	CGCG	6 cut(s)	367, 549, 616, 618, 813, 910
BstHHI	GCGC	3 cut(s)	367, 618, 813
BstKTI	GATC	5 cut(s)	241, 313, 563, 860, 931
BstMAI	GTCTC	1 cut(s)	751
BstMBI	GATC	5 cut(s)	238, 310, 560, 857, 928
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 373, 673
BstNI	CCWGG	1 cut(s)	243
BstNSI	RCATGY	4 cut(s)	296, 376, 441, 542
BstPI	GGTNACC	1 cut(s)	602
BstSCI	CCNGG	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	429
BstSLI	GKGCMC	1 cut(s)	1048
BstUI	CGCG	6 cut(s)	367, 549, 616, 618, 813, 910
BstV1I	GCAGC	3 cut(s)	415, 854, 1073
BstV2I	GAAGAC	1 cut(s)	541
Bsu15I	ATCGAT	1 cut(s)	559
BsuRI	GGCC	4 cut(s)	205, 288, 667, 724
BsuTUI	ATCGAT	1 cut(s)	559
BtgI	CCRYGG	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	597
BtsCI	GGATG	4 cut(s)	160, 289, 310, 1006
BtsIMutI	CAGTG	4 cut(s)	81, 417, 661, 1089
Cac8I	GCNNGC	4 cut(s)	207, 363, 722, 1044
CaiI	CAGNNNCTG	1 cut(s)	848
CfoI	GCGC	3 cut(s)	367, 618, 813
Cfr13I	GGNCC	3 cut(s)	744, 817, 914
ClaI	ATCGAT	1 cut(s)	559
CseI	GACGC	2 cut(s)	555, 696
Csp6I	GTAC	1 cut(s)	889
CviQI	GTAC	1 cut(s)	889
DdeI	CTNAG	2 cut(s)	384, 677
DpnI	GATC	5 cut(s)	240, 312, 562, 859, 930
DpnII	GATC	5 cut(s)	238, 310, 560, 857, 928
Eco130I	CCWWGG	2 cut(s)	150, 830
Eco147I	AGGCCT	3 cut(s)	205, 667, 724
Eco31I	GGTCTC	1 cut(s)	751
Eco47I	GGWCC	3 cut(s)	744, 817, 914
Eco57I	CTGAAG	2 cut(s)	155, 503
Eco72I	CACGTG	1 cut(s)	1049
Eco91I	GGTNACC	1 cut(s)	602
EcoNI	CCTNNNNNAGG	1 cut(s)	751
EcoO109I	RGGNCCY	2 cut(s)	744, 817
EcoO65I	GGTNACC	1 cut(s)	602
EcoRI	GAATTC	1 cut(s)	642
EcoRII	CCWGG	1 cut(s)	241
EcoT14I	CCWWGG	2 cut(s)	150, 830
ErhI	CCWWGG	2 cut(s)	150, 830
FalI	AAGNNNNNCTT	4 cut(s)	773, 805, 952, 984
FaqI	GGGAC	1 cut(s)	1063
FauI	CCCGC	1 cut(s)	611
Fnu4HI	GCNGC	3 cut(s)	429, 843, 1087
FokI	GGATG	4 cut(s)	167, 296, 317, 993
Fsp4HI	GCNGC	3 cut(s)	429, 843, 1087
FspBI	CTAG	3 cut(s)	467, 741, 893
GlaI	GCGC	3 cut(s)	366, 617, 812
GluI	GCNGC	3 cut(s)	429, 843, 1087
GsaI	CCCAGC	1 cut(s)	611
GsuI	CTGGAG	1 cut(s)	720
HaeIII	GGCC	4 cut(s)	205, 288, 667, 724
HgaI	GACGC	2 cut(s)	555, 696
HhaI	GCGC	3 cut(s)	367, 618, 813
Hin1I	GRCGYC	1 cut(s)	688
Hin6I	GCGC	3 cut(s)	365, 616, 811
HinP1I	GCGC	3 cut(s)	365, 616, 811
HinfI	GANTC	2 cut(s)	106, 227
HphI	GGTGA	5 cut(s)	126, 257, 277, 482, 596
Hpy166II	GTNNAC	1 cut(s)	1046
Hpy188I	TCNGA	5 cut(s)	145, 174, 522, 850, 928
Hpy188III	TCNNGA	4 cut(s)	320, 510, 793, 872
Hpy8I	GTNNAC	1 cut(s)	1046
HpyAV	CCTTC	6 cut(s)	241, 467, 830, 954, 974, 1031
HpyCH4III	ACNGT	3 cut(s)	76, 274, 1034
HpyCH4IV	ACGT	2 cut(s)	1048, 1076
HpyCH4V	TGCA	7 cut(s)	4, 209, 224, 431, 461, 1046, 1089
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 373, 673
HpyF3I	CTNAG	2 cut(s)	384, 677
HpySE526I	ACGT	2 cut(s)	1048, 1076
Hsp92I	GRCGYC	1 cut(s)	688
HspAI	GCGC	3 cut(s)	365, 616, 811
Kzo9I	GATC	5 cut(s)	238, 310, 560, 857, 928
Lsp1109I	GCAGC	3 cut(s)	415, 854, 1073
LweI	GCATC	4 cut(s)	136, 145, 620, 1015
MaeI	CTAG	3 cut(s)	467, 741, 893
MaeII	ACGT	2 cut(s)	1048, 1076
MaeIII	GTNAC	6 cut(s)	368, 406, 433, 602, 983, 1028
MalI	GATC	5 cut(s)	240, 312, 562, 859, 930
MboI	GATC	5 cut(s)	238, 310, 560, 857, 928
MboII	GAAGA	4 cut(s)	95, 546, 555, 563
MhlI	GDGCHC	1 cut(s)	1048
MluCI	AATT	2 cut(s)	128, 642
MmeI	TCCRAC	3 cut(s)	523, 556, 613
MseI	TTAA	4 cut(s)	162, 330, 453, 623
MspR9I	CCNGG	1 cut(s)	243
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	243
MvnI	CGCG	6 cut(s)	367, 549, 616, 618, 813, 910
MwoI	GCNNNNNNNGC	3 cut(s)	155, 373, 673
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	5 cut(s)	238, 310, 560, 857, 928
NmuCI	GTSAC	1 cut(s)	602
NspI	RCATGY	4 cut(s)	296, 376, 441, 542
PceI	AGGCCT	3 cut(s)	205, 667, 724
PciI	ACATGT	2 cut(s)	437, 538
PctI	GAATGC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	106, 227
PkrI	GCNGC	3 cut(s)	430, 844, 1088
PmaCI	CACGTG	1 cut(s)	1049
PmlI	CACGTG	1 cut(s)	1049
Ppu21I	YACGTR	1 cut(s)	1049
PpuMI	RGGWCCY	2 cut(s)	744, 817
PscI	ACATGT	2 cut(s)	437, 538
Psp5II	RGGWCCY	2 cut(s)	744, 817
Psp6I	CCWGG	1 cut(s)	241
PspCI	CACGTG	1 cut(s)	1049
PspEI	GGTNACC	1 cut(s)	602
PspFI	CCCAGC	1 cut(s)	607
PspGI	CCWGG	1 cut(s)	241
PspPI	GGNCC	3 cut(s)	744, 817, 914
PspPPI	RGGWCCY	2 cut(s)	744, 817
PstI	CTGCAG	1 cut(s)	433
PstNI	CAGNNNCTG	1 cut(s)	848
RsaI	GTAC	1 cut(s)	890
RsaNI	GTAC	1 cut(s)	889
SaqAI	TTAA	4 cut(s)	162, 330, 453, 623
SatI	GCNGC	3 cut(s)	429, 843, 1087
Sau3AI	GATC	5 cut(s)	238, 310, 560, 857, 928
Sau96I	GGNCC	3 cut(s)	744, 817, 914
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	1048
SfaNI	GCATC	4 cut(s)	136, 145, 620, 1015
SfcI	CTRYAG	1 cut(s)	429
SinI	GGWCC	3 cut(s)	744, 817, 914
Sse9I	AATT	2 cut(s)	128, 642
SseBI	AGGCCT	3 cut(s)	205, 667, 724
SsiI	CCGC	2 cut(s)	618, 908
SspMI	CTAG	3 cut(s)	467, 741, 893
StuI	AGGCCT	3 cut(s)	205, 667, 724
StyD4I	CCNGG	1 cut(s)	241
StyI	CCWWGG	2 cut(s)	150, 830
TaaI	ACNGT	3 cut(s)	76, 274, 1034
TaiI	ACGT	2 cut(s)	1051, 1079
TaqI	TCGA	3 cut(s)	319, 559, 640
TasI	AATT	2 cut(s)	128, 642
TfiI	GAWTC	2 cut(s)	106, 227
Tru1I	TTAA	4 cut(s)	162, 330, 453, 623
Tru9I	TTAA	4 cut(s)	162, 330, 453, 623
TscAI	CASTG	4 cut(s)	81, 424, 661, 1096
TseFI	GTSAC	1 cut(s)	602
TseI	GCWGC	3 cut(s)	428, 842, 1086
Tsp45I	GTSAC	1 cut(s)	602
TspDTI	ATGAA	7 cut(s)	119, 223, 264, 288, 585, 993, 1014
TspGWI	ACGGA	1 cut(s)	1002
TspRI	CASTG	4 cut(s)	81, 424, 661, 1096
VneI	GTGCAC	1 cut(s)	1044
VpaK11BI	GGWCC	3 cut(s)	744, 817, 914
XagI	CCTNNNNNAGG	1 cut(s)	751
XapI	RAATTY	2 cut(s)	128, 642
XceI	RCATGY	4 cut(s)	296, 376, 441, 542
XspI	CTAG	3 cut(s)	467, 741, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.