Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007307

Physical Location & Seq

Genomic Coordinates Forward (+)

38192857 .. 38197539

Gene Structure 4683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG191600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2442 bp

ATGCCTCCGAGGACGGTGAAGAGAGGTGCGGGGTTGGCGGGTACTAAGAGGACGACGAGGGCCGCCAGAGGAGCACCCAAGGCCCAGAACCAGGCCCAGCCCGATGTGCCTGACAAGTCAATGAAGGCTGAAGTCGCGGTGCCGGTGGCCGGAGGTAAAGAGGAGCTCAAAGGTGAAGAGATGCGTGAGAAGCCGATTGTGGAGGAAGCTGCGGTGGTTGTGGAGGAAGATCCAGTTGTTGAGGAGAAGCCTGTTGCTATTGATCGCCCAGGGTTTGAAGTCGATGCGAAATCGGATCAGAATGGCTTCAAAAAACAAGATAAGGCTAAGGACTCTATAGATGATTATGAAAAAGATGAACGGCTAGAGCTGGAGGATAATGAACCTGAATATGAACCCGAAGAATATGTTGGGGTTGATTACGATGAGAAGGAGATTGAACAAGAGGATGCCCAGGAGGCTGAGGATGAAGGAGATGAGGATCCTGAGGAGAATCTAGGTGAAGAAGAGGGTGATATGGCTGAGGAGGAAATGGAAGATGTACATGAAGAAATTGAAGGTGAAGAATATGAGGAGCATGGTGGTGACGACCATGAGCATGAGCATGAGCATACACATGCACAGATGGTTGACGCTGAGGAAGAGGAGCATCATGAAGTTGTGAAAGAGAGGCGGAAGCGCAAGGAATTCGAAGTGTTTGTTGGTGGCTTAGACAAGGATGCAGATGAAGCTGATCTTAGGAAAGCTTTTGGTGTAGTTGGTGAGGTTACTGAGGTTAGATTGATGATGAACCCTCAGACTAAGAAGAACAAGGGATTTGCATTCTTGCGTTTTGCAACTGTGGATCAAGCAAAACGAGCTGTTAGAGAGCTTAAACATCCAGTGATCAATGGGAAACAATGTGGTGTTACTCCAAGTCAAGATAGTGATACCCTTTTTCTGGGTAACATCTGCAAAACATGGTCGAAGGATGCTTTGAAGGAGAAATTGAAACATTATGGAGTAGATAATGTTGAGGATTTGACAGTAGTTGAAGATACTAATAATGAGGGAATGAATCGGGGCTTTGCTTTTTTGGAATTTTCATCTCGCTCGGATGCCATGGATGCCTTCAAGCGCCTTCAGAAAAGAGATATTGTGTTTGGAGTTGAAAGGCCTGCAAAGGTTTCTTTTGCAGATTCCTTCATTGACCCTGGTGATGAAATTATGGCGCAGGTTAAAACTATATTTGTGGATGGCCTACCTGCTTCTTGGGACGAGGATTATGTTCAACAGCTTCTTAAGGACTATGGGGAGATTGAAAAGATAGAGCTTGCTCGCAACATGCCTTCTGCCAAGAGGAAGGATTTTGGTTTTATTACATTTGACACTCACGAGAATGCATTGACATGTGCTAATTGCATCAACAATGCAGAAATAGGTGAAGGGGACAACAAGGCAAAGCTTAGGGCAAGGTTGTCAAGACCCCTTCAGAGAGGGAAAGGCAAACATGTAGGTCGTGGTGATTATCGGTCCCCACGGGGGGATGGACGAGTTATTAGGGGTTCATGGGGGCGCCCTACACCACCACGTAGTCTACCTATGCGTGGATTAAGAGGAGTTGGAAGTCGTATCCCACCAGCCAGTGTGAAGAGGCCTGTTGGACTGAGAGATAGACGCCCTGCGATCTCGTCTTATCCTGCTAGACCCAGGCCTTTGCCTCCTCCAGCTAGGTCCTATGACAGGAGGCCACCTGTTCCGGCCTACCCAAAGAGTAGCTTCAGAAGGGAATATAGTAGACGGGATGACCTTCCTCCTCCAAGGAGCAGAGCAGCGGCTGATTATGGTTCAAGGGCTGTGCCAGAGAGACGCCAGTCATATAGAGATGACTATAGTACACGTGGTCCAGCCTATGTTGACCCACCAAGAAGTACATCTCGTACAACAACGAGGAGAGCTTATGTAGATGACAGTTATGGACAAAGGTTTGAAAGGCACCCTCCCCCACCTCCTCCTAGTTACCACCGTGAAGGTCGTGCTCGTGATTACGACTCTATTTCTGGGTCAAAGCGTCCATACTCTGCTCTGGACGATGTTCCACCTCGATATGCTGATGCTGGCATCCGCCAATCAAGGGCACGATTGGACTATGAATATGGAAGTGGTTCTTCTCAATATGGGGATGGCTATAGTGATAGAGTTGGGAGGTCTAGTTTAGGATATGGGAGCAGCAGGACAAGTCAGGATTCACATGGACTTTATAGCAGCCGTCAGAGCATGGGTTATGGAGGAGGTTCTTATGGTGGTAATGATGTTGGTGGGATGTACTCATCAAGCTACGGTGGTGATTATATGTCTCGTGGAAATGATGTTGGAGGTAGCTCTTACTCATCAATGTACTCCGGTCGTGGTGTTGGTGGAAGCAGTTATATGGGTTCAGGTGGTTCCGGCTCATACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0007623 GO:0008150 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0030425 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0036477 GO:0042995 GO:0043005 GO:0043025 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045727 GO:0045934 GO:0048027 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070937 GO:0071204 GO:0080090 GO:0090365 GO:0090367 GO:0097159 GO:0097447 GO:0097458 GO:0120025 GO:0120038 GO:1901363 GO:1903311 GO:1903312 GO:1990635 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

813

Amino Acids

90.76

Weight (kDa)

5.3

Isoelectric Point (pI)

57.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	232 - 300	2.8e-17	RNA recognition motif
RRM_1	PF00076	312 - 378	7e-08	RNA recognition motif
RRM_1	PF00076	409 - 474	6.2e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44710 AT2G44710 AT2G44710 AT2G44710
fragaria_vesca	FvH4_7g09210
malus_domestica	MD02G1220100.v1.1 MD07G1096800.v1.1
prunus_persica	Prupe.2G120600_v2.0.a1 Prupe.2G120600_v2.0.a1 Prupe.2G120600_v2.0.a1 Prupe.2G120600_v2.0.a1
pyrus_communis	pycom02g18060 pycom07g07990
rosa_chinensis	RchiOBHm_Chr1g0345261
rosa_laevigata	RLG00000028843
rosa_multiflora	Rmu_sc0002329.1_g000009 Rmu_sc0003175.1_g000005 Rmu_sc0011244.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309150
rosa_rugosa	Rorug01G0177000
rosa_samantha	Rh1AG195100 Rh1BG161200 Rh1CG179500 Rh1DG191600
rosa_wichuraiana	Rw1G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1204, 1252
AccB1I	GGYRCC	3 cut(s)	139, 1554, 1974
AccI	GTMKAC	2 cut(s)	1576, 1777
AccII	CGCG	1 cut(s)	137
AciI	CCGC	8 cut(s)	29, 38, 63, 137, 212, 673, 1814, 2104
AclWI	GGATC	5 cut(s)	224, 303, 476, 489, 852
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	2 cut(s)	686, 1079
AcuI	CTGAAG	4 cut(s)	150, 1106, 1454, 1744
AcvI	CACGTG	1 cut(s)	1880
AcyI	GRCGYC	3 cut(s)	1555, 1657, 1849
AfaI	GTAC	7 cut(s)	43, 543, 1876, 1912, 1921, 2306, 2378
AfiI	CCNNNNNNNGG	8 cut(s)	91, 149, 940, 1521, 1522, 1586, 1722, 2113
AflII	CTTAAG	1 cut(s)	1280
AflIII	ACRYGT	3 cut(s)	1388, 1489, 1877
AjnI	CCWGG	5 cut(s)	90, 268, 453, 1192, 1688
AjuI	GAANNNNNNNTTGG	4 cut(s)	393, 425, 684, 716
Alw21I	GWGCWC	3 cut(s)	76, 168, 2020
Alw26I	GTCTC	2 cut(s)	1840, 2340
AlwI	GGATC	5 cut(s)	224, 303, 476, 489, 852
AlwNI	CAGNNNCTG	1 cut(s)	1817
ApeKI	GCWGC	4 cut(s)	209, 1811, 2208, 2244
ApoI	RAATTY	2 cut(s)	686, 1079
Asp700I	GAANNNNTTC	2 cut(s)	305, 2143
AspLEI	GCGC	4 cut(s)	681, 1119, 1213, 1557
AspS9I	GGNCC	6 cut(s)	60, 82, 94, 1512, 1713, 1883
AsuII	TTCGAA	1 cut(s)	690
AvaII	GGWCC	3 cut(s)	1512, 1713, 1883
AxyI	CCTNAGG	1 cut(s)	486
BaeGI	GKGCMC	1 cut(s)	2119
BamHI	GGATCC	1 cut(s)	481
BanI	GGYRCC	3 cut(s)	139, 1554, 1974
BanII	GRGCYC	1 cut(s)	168
BauI	CACGAG	3 cut(s)	1373, 2019, 2337
BbrPI	CACGTG	1 cut(s)	1880
Bbv12I	GWGCWC	3 cut(s)	76, 168, 2020
BbvCI	CCTCAGC	3 cut(s)	462, 522, 636
BbvI	GCAGC	4 cut(s)	196, 1823, 2220, 2256
BccI	CCATC	4 cut(s)	619, 1229, 1520, 2156
BceAI	ACGGC	2 cut(s)	377, 2232
BcgI	CGANNNNNNTGC	2 cut(s)	670, 704
BciT130I	CCWGG	5 cut(s)	92, 270, 455, 1194, 1690
BciVI	GTATCC	1 cut(s)	1622
BclI	TGATCA	1 cut(s)	885
BcoDI	GTCTC	2 cut(s)	1840, 2340
BfaI	CTAG	6 cut(s)	365, 497, 1683, 1710, 1995, 2190
BfmI	CTRYAG	3 cut(s)	336, 1870, 2167
BfoI	RGCGCY	2 cut(s)	1120, 1558
BfrI	CTTAAG	1 cut(s)	1280
BfuAI	ACCTGC	2 cut(s)	1204, 1252
BfuI	GTATCC	1 cut(s)	1622
BglI	GCCNNNNNGGC	1 cut(s)	458
BisI	GCNGC	6 cut(s)	63, 210, 1812, 1815, 2209, 2245
BlsI	GCNGC	6 cut(s)	64, 211, 1813, 1816, 2210, 2246
Bme1390I	CCNGG	5 cut(s)	92, 270, 455, 1194, 1690
Bme18I	GGWCC	3 cut(s)	1512, 1713, 1883
BmgT120I	GGNCC	6 cut(s)	60, 82, 94, 1512, 1713, 1883
BmiI	GGNNCC	6 cut(s)	141, 483, 1514, 1556, 1976, 2425
BmrFI	CCNGG	5 cut(s)	92, 270, 455, 1194, 1690
BoxI	GACNNNNGTC	1 cut(s)	1852
BpmI	CTGGAG	2 cut(s)	392, 1689
Bpu10I	CCTNAGC	5 cut(s)	327, 462, 522, 636, 1445
Bpu14I	TTCGAA	1 cut(s)	690
BsaAI	YACGTR	2 cut(s)	1571, 1880
BsaBI	GATNNNNATC	1 cut(s)	480
BsaHI	GRCGYC	3 cut(s)	1555, 1657, 1849
BsaWI	WCCGGW	1 cut(s)	2381
BsaXI	ACNNNNNCTCC	2 cut(s)	2176, 2206
Bsc4I	CCNNNNNNNGG	8 cut(s)	91, 149, 940, 1521, 1522, 1586, 1722, 2113
Bse118I	RCCGGY	1 cut(s)	142
Bse1I	ACTGG	4 cut(s)	233, 881, 1623, 1852
Bse21I	CCTNAGG	1 cut(s)	486
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	5 cut(s)	92, 270, 455, 1194, 1690
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	8 cut(s)	91, 149, 940, 1521, 1522, 1586, 1722, 2113
BseMII	CTCAG	7 cut(s)	453, 477, 513, 627, 762, 809, 1637
BseNI	ACTGG	4 cut(s)	233, 881, 1623, 1852
BseSI	GKGCMC	1 cut(s)	2119
BseXI	GCAGC	4 cut(s)	196, 1823, 2220, 2256
BseYI	CCCAGC	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	2386
BshNI	GGYRCC	3 cut(s)	139, 1554, 1974
BsiEI	CGRYCG	1 cut(s)	2386
BsiHKAI	GWGCWC	3 cut(s)	76, 168, 2020
BsiSI	CCGG	5 cut(s)	143, 150, 1739, 2382, 2427
BslFI	GGGAC	3 cut(s)	1268, 1442, 1498
BslI	CCNNNNNNNGG	8 cut(s)	91, 149, 940, 1521, 1522, 1586, 1722, 2113
BsmAI	GTCTC	2 cut(s)	1840, 2340
BsmBI	CGTCTC	1 cut(s)	1840
BsmFI	GGGAC	3 cut(s)	1268, 1442, 1498
BsmI	GAATGC	2 cut(s)	821, 1384
Bsp119I	TTCGAA	1 cut(s)	690
Bsp1286I	GDGCHC	4 cut(s)	76, 168, 2020, 2119
Bsp1407I	TGTACA	1 cut(s)	541
Bsp143I	GATC	8 cut(s)	229, 262, 295, 481, 733, 844, 885, 1665
Bsp19I	CCATGG	1 cut(s)	1101
BspACI	CCGC	8 cut(s)	29, 38, 63, 137, 212, 673, 1814, 2104
BspCNI	CTCAG	7 cut(s)	454, 478, 514, 628, 763, 808, 1638
BspFNI	CGCG	1 cut(s)	137
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	6 cut(s)	141, 483, 1514, 1556, 1976, 2425
BspMI	ACCTGC	2 cut(s)	1204, 1252
BspPI	GGATC	5 cut(s)	224, 303, 476, 489, 852
BspT104I	TTCGAA	1 cut(s)	690
BspT107I	GGYRCC	3 cut(s)	139, 1554, 1974
BspTI	CTTAAG	1 cut(s)	1280
BsrFI	RCCGGY	1 cut(s)	142
BsrGI	TGTACA	1 cut(s)	541
BsrI	ACTGG	4 cut(s)	233, 881, 1623, 1852
BssAI	RCCGGY	1 cut(s)	142
BssMI	GATC	8 cut(s)	229, 262, 295, 481, 733, 844, 885, 1665
BssNI	GRCGYC	3 cut(s)	1555, 1657, 1849
BssSI	CACGAG	3 cut(s)	1373, 2019, 2337
BssT1I	CCWWGG	3 cut(s)	78, 1101, 1799
Bst2BI	CACGAG	3 cut(s)	1373, 2019, 2337
Bst2UI	CCWGG	5 cut(s)	92, 270, 455, 1194, 1690
Bst4CI	ACNGT	6 cut(s)	16, 841, 1027, 1952, 2006, 2321
Bst6I	CTCTTC	5 cut(s)	14, 171, 501, 636, 1625
BstACI	GRCGYC	3 cut(s)	1555, 1657, 1849
BstAFI	CTTAAG	1 cut(s)	1280
BstAUI	TGTACA	1 cut(s)	541
BstBAI	YACGTR	2 cut(s)	1571, 1880
BstBI	TTCGAA	1 cut(s)	690
BstC8I	GCNNGC	4 cut(s)	1158, 1314, 1318, 2098
BstDSI	CCRYGG	2 cut(s)	1101, 1517
BstENI	CCTNNNNNAGG	1 cut(s)	1720
BstFNI	CGCG	1 cut(s)	137
BstH2I	RGCGCY	2 cut(s)	1120, 1558
BstHHI	GCGC	4 cut(s)	681, 1119, 1213, 1557
BstKTI	GATC	8 cut(s)	232, 265, 298, 484, 736, 847, 888, 1668
BstMAI	GTCTC	2 cut(s)	1840, 2340
BstMBI	GATC	8 cut(s)	229, 262, 295, 481, 733, 844, 885, 1665
BstMCI	CGRYCG	1 cut(s)	2386
BstNI	CCWGG	5 cut(s)	92, 270, 455, 1194, 1690
BstNSI	RCATGY	4 cut(s)	620, 1327, 1392, 1493
BstPAI	GACNNNNGTC	1 cut(s)	1852
BstSCI	CCNGG	5 cut(s)	90, 268, 453, 1192, 1688
BstSFI	CTRYAG	3 cut(s)	336, 1870, 2167
BstSLI	GKGCMC	1 cut(s)	2119
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	4 cut(s)	196, 1823, 2220, 2256
BstX2I	RGATCY	2 cut(s)	229, 481
BstYI	RGATCY	2 cut(s)	229, 481
Bsu36I	CCTNAGG	1 cut(s)	486
BsuI	GTATCC	1 cut(s)	1622
BtgI	CCRYGG	2 cut(s)	1101, 1517
BtsIMutI	CAGTG	2 cut(s)	888, 1630
BveI	ACCTGC	2 cut(s)	1204, 1252
Cac8I	GCNNGC	4 cut(s)	1158, 1314, 1318, 2098
CaiI	CAGNNNCTG	1 cut(s)	1817
CciI	TCATGA	1 cut(s)	652
CfoI	GCGC	4 cut(s)	681, 1119, 1213, 1557
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	6 cut(s)	60, 82, 94, 1512, 1713, 1883
CseI	GACGC	4 cut(s)	641, 1665, 1857, 2039
Csp6I	GTAC	7 cut(s)	42, 542, 1875, 1911, 1920, 2305, 2377
CviQI	GTAC	7 cut(s)	42, 542, 1875, 1911, 1920, 2305, 2377
DinI	GGCGCC	1 cut(s)	1556
DpnI	GATC	8 cut(s)	231, 264, 297, 483, 735, 846, 887, 1667
DpnII	GATC	8 cut(s)	229, 262, 295, 481, 733, 844, 885, 1665
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	5 cut(s)	14, 171, 501, 636, 1625
EarI	CTCTTC	5 cut(s)	14, 171, 501, 636, 1625
EciI	GGCGGA	2 cut(s)	688, 2093
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	3 cut(s)	78, 1101, 1799
Eco147I	AGGCCT	3 cut(s)	1156, 1636, 1693
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	3 cut(s)	1512, 1713, 1883
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	4 cut(s)	150, 1106, 1454, 1744
Eco72I	CACGTG	1 cut(s)	1880
Eco81I	CCTNAGG	1 cut(s)	486
EcoICRI	GAGCTC	1 cut(s)	166
EcoNI	CCTNNNNNAGG	1 cut(s)	1720
EcoO109I	RGGNCCY	1 cut(s)	1713
EcoRI	GAATTC	1 cut(s)	686
EcoRII	CCWGG	5 cut(s)	90, 268, 453, 1192, 1688
EcoT14I	CCWWGG	3 cut(s)	78, 1101, 1799
EcoT22I	ATGCAT	1 cut(s)	1384
EcoT38I	GRGCYC	1 cut(s)	168
EgeI	GGCGCC	1 cut(s)	1556
EheI	GGCGCC	1 cut(s)	1556
ErhI	CCWWGG	3 cut(s)	78, 1101, 1799
Esp3I	CGTCTC	1 cut(s)	1840
FalI	AAGNNNNNCTT	6 cut(s)	720, 752, 1742, 1774, 2131, 2163
FaqI	GGGAC	3 cut(s)	1268, 1442, 1498
FauI	CCCGC	2 cut(s)	22, 31
FbaI	TGATCA	1 cut(s)	885
FblI	GTMKAC	2 cut(s)	1576, 1777
Fnu4HI	GCNGC	6 cut(s)	63, 210, 1812, 1815, 2209, 2245
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	6 cut(s)	63, 210, 1812, 1815, 2209, 2245
FspBI	CTAG	6 cut(s)	365, 497, 1683, 1710, 1995, 2190
GlaI	GCGC	4 cut(s)	680, 1118, 1212, 1556
GluI	GCNGC	6 cut(s)	63, 210, 1812, 1815, 2209, 2245
GsaI	CCCAGC	1 cut(s)	100
GsuI	CTGGAG	2 cut(s)	392, 1689
HaeII	RGCGCY	2 cut(s)	1120, 1558
HapII	CCGG	5 cut(s)	143, 150, 1739, 2382, 2427
HgaI	GACGC	4 cut(s)	641, 1665, 1857, 2039
HhaI	GCGC	4 cut(s)	681, 1119, 1213, 1557
Hin1I	GRCGYC	3 cut(s)	1555, 1657, 1849
Hin6I	GCGC	4 cut(s)	679, 1117, 1211, 1555
HinP1I	GCGC	4 cut(s)	679, 1117, 1211, 1555
HincII	GTYRAC	2 cut(s)	631, 1897
HindII	GTYRAC	2 cut(s)	631, 1897
HindIII	AAGCTT	2 cut(s)	744, 1442
HinfI	GANTC	6 cut(s)	332, 493, 1057, 1178, 2030, 2225
HpaII	CCGG	5 cut(s)	143, 150, 1739, 2382, 2427
Hpy166II	GTNNAC	5 cut(s)	631, 1577, 1778, 1877, 1897
Hpy188I	TCNGA	9 cut(s)	9, 295, 300, 798, 1096, 1125, 1473, 1763, 2253
Hpy188III	TCNNGA	8 cut(s)	485, 653, 920, 1373, 1461, 2021, 2066, 2222
Hpy8I	GTNNAC	5 cut(s)	631, 1577, 1778, 1877, 1897
Hpy99I	CGWCG	1 cut(s)	58
HpyCH4III	ACNGT	6 cut(s)	16, 841, 1027, 1952, 2006, 2321
HpyCH4IV	ACGT	2 cut(s)	1570, 1879
HpySE526I	ACGT	2 cut(s)	1570, 1879
Hsp92I	GRCGYC	3 cut(s)	1555, 1657, 1849
HspAI	GCGC	4 cut(s)	679, 1117, 1211, 1555
KasI	GGCGCC	1 cut(s)	1554
Ksp22I	TGATCA	1 cut(s)	885
Kzo9I	GATC	8 cut(s)	229, 262, 295, 481, 733, 844, 885, 1665
LmnI	GCTCC	6 cut(s)	71, 163, 574, 646, 1803, 2205
Lsp1109I	GCAGC	4 cut(s)	196, 1823, 2220, 2256
MaeI	CTAG	6 cut(s)	365, 497, 1683, 1710, 1995, 2190
MaeII	ACGT	2 cut(s)	1570, 1879
MaeIII	GTNAC	5 cut(s)	584, 766, 907, 944, 1997
MalI	GATC	8 cut(s)	231, 264, 297, 483, 735, 846, 887, 1667
MboI	GATC	8 cut(s)	229, 262, 295, 481, 733, 844, 885, 1665
MflI	RGATCY	2 cut(s)	229, 481
MhlI	GDGCHC	4 cut(s)	76, 168, 2020, 2119
MluCI	AATT	6 cut(s)	552, 686, 986, 1079, 1203, 1396
Mly113I	GGCGCC	1 cut(s)	1555
MlyI	GAGTC	2 cut(s)	326, 2024
MmeI	TCCRAC	3 cut(s)	1582, 1621, 2332
Mph1103I	ATGCAT	1 cut(s)	1384
MroXI	GAANNNNTTC	2 cut(s)	305, 2143
MseI	TTAA	4 cut(s)	873, 1218, 1281, 1592
MslI	CAYNNNNRTG	6 cut(s)	582, 597, 603, 615, 1377, 1387
MspA1I	CMGCKG	1 cut(s)	1814
MspCI	CTTAAG	1 cut(s)	1280
MspI	CCGG	5 cut(s)	143, 150, 1739, 2382, 2427
MspR9I	CCNGG	5 cut(s)	92, 270, 455, 1194, 1690
Mva1269I	GAATGC	2 cut(s)	821, 1384
MvaI	CCWGG	5 cut(s)	92, 270, 455, 1194, 1690
MvnI	CGCG	1 cut(s)	137
NarI	GGCGCC	1 cut(s)	1555
NcoI	CCATGG	1 cut(s)	1101
NdeII	GATC	8 cut(s)	229, 262, 295, 481, 733, 844, 885, 1665
NlaIV	GGNNCC	6 cut(s)	141, 483, 1514, 1556, 1976, 2425
NmuCI	GTSAC	1 cut(s)	584
NsiI	ATGCAT	1 cut(s)	1384
NspI	RCATGY	4 cut(s)	620, 1327, 1392, 1493
NspV	TTCGAA	1 cut(s)	690
PagI	TCATGA	1 cut(s)	652
PasI	CCCWGGG	1 cut(s)	269
PceI	AGGCCT	3 cut(s)	1156, 1636, 1693
PciI	ACATGT	2 cut(s)	1388, 1489
PctI	GAATGC	2 cut(s)	821, 1384
PdmI	GAANNNNTTC	2 cut(s)	305, 2143
PfeI	GAWTC	4 cut(s)	493, 1057, 1178, 2225
PkrI	GCNGC	6 cut(s)	64, 211, 1813, 1816, 2210, 2246
PleI	GAGTC	2 cut(s)	326, 2024
PluTI	GGCGCC	1 cut(s)	1558
PmaCI	CACGTG	1 cut(s)	1880
PmlI	CACGTG	1 cut(s)	1880
PpsI	GAGTC	2 cut(s)	326, 2024
Ppu21I	YACGTR	2 cut(s)	1571, 1880
PpuMI	RGGWCCY	1 cut(s)	1713
PscI	ACATGT	2 cut(s)	1388, 1489
PshAI	GACNNNNGTC	1 cut(s)	1852
Psp124BI	GAGCTC	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	1713
Psp6I	CCWGG	5 cut(s)	90, 268, 453, 1192, 1688
PspCI	CACGTG	1 cut(s)	1880
PspFI	CCCAGC	1 cut(s)	96
PspGI	CCWGG	5 cut(s)	90, 268, 453, 1192, 1688
PspN4I	GGNNCC	6 cut(s)	141, 483, 1514, 1556, 1976, 2425
PspPI	GGNCC	6 cut(s)	60, 82, 94, 1512, 1713, 1883
PspPPI	RGGWCCY	1 cut(s)	1713
PstNI	CAGNNNCTG	1 cut(s)	1817
PsuI	RGATCY	2 cut(s)	229, 481
RsaI	GTAC	7 cut(s)	43, 543, 1876, 1912, 1921, 2306, 2378
RsaNI	GTAC	7 cut(s)	42, 542, 1875, 1911, 1920, 2305, 2377
RseI	CAYNNNNRTG	6 cut(s)	582, 597, 603, 615, 1377, 1387
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	4 cut(s)	873, 1218, 1281, 1592
SatI	GCNGC	6 cut(s)	63, 210, 1812, 1815, 2209, 2245
Sau3AI	GATC	8 cut(s)	229, 262, 295, 481, 733, 844, 885, 1665
Sau96I	GGNCC	6 cut(s)	60, 82, 94, 1512, 1713, 1883
SchI	GAGTC	2 cut(s)	326, 2024
ScrFI	CCNGG	5 cut(s)	92, 270, 455, 1194, 1690
SduI	GDGCHC	4 cut(s)	76, 168, 2020, 2119
SfcI	CTRYAG	3 cut(s)	336, 1870, 2167
SfoI	GGCGCC	1 cut(s)	1556
SfuI	TTCGAA	1 cut(s)	690
SinI	GGWCC	3 cut(s)	1512, 1713, 1883
SmiMI	CAYNNNNRTG	6 cut(s)	582, 597, 603, 615, 1377, 1387
SmlI	CTYRAG	1 cut(s)	1280
SmoI	CTYRAG	1 cut(s)	1280
Sse9I	AATT	6 cut(s)	552, 686, 986, 1079, 1203, 1396
SseBI	AGGCCT	3 cut(s)	1156, 1636, 1693
SsiI	CCGC	8 cut(s)	29, 38, 63, 137, 212, 673, 1814, 2104
SspDI	GGCGCC	1 cut(s)	1554
SspMI	CTAG	6 cut(s)	365, 497, 1683, 1710, 1995, 2190
SstI	GAGCTC	1 cut(s)	168
StuI	AGGCCT	3 cut(s)	1156, 1636, 1693
StyD4I	CCNGG	5 cut(s)	90, 268, 453, 1192, 1688
StyI	CCWWGG	3 cut(s)	78, 1101, 1799
TaaI	ACNGT	6 cut(s)	16, 841, 1027, 1952, 2006, 2321
TaiI	ACGT	2 cut(s)	1573, 1882
TaqI	TCGA	4 cut(s)	282, 690, 965, 2083
TaqII	GACCGA	1 cut(s)	1500
TasI	AATT	6 cut(s)	552, 686, 986, 1079, 1203, 1396
TatI	WGTACW	5 cut(s)	541, 1874, 1910, 2304, 2376
TauI	GCSGC	2 cut(s)	65, 1817
TfiI	GAWTC	4 cut(s)	493, 1057, 1178, 2225
Tru1I	TTAA	4 cut(s)	873, 1218, 1281, 1592
Tru9I	TTAA	4 cut(s)	873, 1218, 1281, 1592
TscAI	CASTG	2 cut(s)	888, 1630
TseFI	GTSAC	1 cut(s)	584
TseI	GCWGC	4 cut(s)	209, 1811, 2208, 2244
Tsp45I	GTSAC	1 cut(s)	584
TspRI	CASTG	2 cut(s)	888, 1630
Vha464I	CTTAAG	1 cut(s)	1280
VpaK11BI	GGWCC	3 cut(s)	1512, 1713, 1883
XagI	CCTNNNNNAGG	1 cut(s)	1720
XapI	RAATTY	2 cut(s)	686, 1079
XceI	RCATGY	4 cut(s)	620, 1327, 1392, 1493
XmiI	GTMKAC	2 cut(s)	1576, 1777
XmnI	GAANNNNTTC	2 cut(s)	305, 2143
XspI	CTAG	6 cut(s)	365, 497, 1683, 1710, 1995, 2190
Zsp2I	ATGCAT	1 cut(s)	1384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.