Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007307

Physical Location & Seq

Genomic Coordinates Forward (+)

37183579 .. 37188318

Gene Structure 4740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG195100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2445 bp

ATGCCTCCGAGGACGGTGAAGAGAGGTTCGGGGTCGGCGGGTACTAAGAGGACGACGAGGGCTACCAGAGGAGCTCCCAAGGCCCAGAACCAGGCCCAGCTCGATGTGCCTGACGAGTCAATGAAGGCTGAGGTCACGGTACCGGTGGCTGAAGGTAAAGAGGAGCTCAAGGGTGAAAGGATTCAAGAGAAGCCGATTGTGGAGGAAGCTGCGGTGGTTTTGGAGGAAGATCCAGTTGTTGAGGAGAAGCCTGTTGCTATTGATCGCCCACGGTTTGAAGTCGATGTGAAATCGGATCAGAACGGCTTCAAAAAACAAGATAAGGCTAAGGACTCTATAGATGATTATGAAAAAGATGAACGGCTAGAGCTGGAGGATAATGAACCTGAATATGAACCCGAAGAATATGTTGGCGTTGATTACGATGAGAAGGAGATTGAACAAGAGGATGCCCAGGAGGCTGAGGATGAAGGAGATGAGGATCCTGAGGAGAATCTAGGTGAAGAAGAGGGTGATATGGCTGAGGAGGAAATGGAAGATGTACATGAAGAAATTGAAGGTGAAGAATATGAGGAGCGTGGTGGTGAGGACCATGAGCATGAGCATGAGCATGAGCATGCACATGCACAGATGGTTGACGCCGAGGAAGAGGAGCACCATGAAGTTGTGAAAGAGAGGCGGAAGCGCAAGGAATTCGAAGTGTTTGTTGGTGGCTTAGACAAGGATGCAGATGAAGCTGATCTTAGGAAAGCTTTTGGTGTAGTTGGTGAGGTTACTGAGGTTAGATTGATGATGAACCCTCAGACTAAGAAGAACAAGGGATTTGCATTCTTGCGTTTTGCAACTGTGGAACAAGCAAAACGAGCTGTTAGAGAGCTTAAACATCCAGTGATCAATGGGAAACAATGTGGTGTTACTCCAAGTCAAGATAGTGATACCCTTTTTCTGGGTAACATCTGCAAAACATGGTCAAAGGATGCTTTGAAGGAGAAATTGAAACATTATGGAGTAGATAATGTTGAGGATTTGACAGTAGTTGAAGATACTAATAATGAGGGAATGAATCGGGGCTTTGCTTTTTTGGAATTTTCATCTCGCTCGGATGCCATGGATGCCTTCAAGCGCCTTCAGAAAAGAGATATTGTGTTTGGAGTTGAAAGGCCTGCAAAGGTTTCTTTTGCAGATTCCTTCATTGACCCTGGTGATGAAATTATGGCGCAGGTTAAAACTATATTTGTGGATGGCCTACCTGCTTCTTGGGACGAGGATTATGTTCAACAGCTTCTTAAGGACTATGGGGAGATTGAAAAGATAGAGCTTGCTCGCAACATGCCTTCTGCCAAGAGGAAGGATTTTGGTTTTATTACATTTGACACTCACGAGAATGCATTGACATGTGCTAATTGCATCAACAATGCAGAAATAGGTGAAGGGGACAACAAGGCAAAGCTTAGGGCAAGGTTGTCAAGACCCCTTCAGAGAGGGAAAGGCAAACATGTGGGTCGTGGTGATTATCGGTCCCCACGGGGGGATGGACGAGTTATTAGGGGTTCATGGGGGCGCCCTACACCACCACGTAGTCTACCTATGCGTGGATTAAGAGGAGTTGGAAGTCGTATCCCACCAGCCAGTGTGAAGAGGCCTGTTGGACTGAGAGATAGACGCCCCGCGATCTCGTCTTATCCTGCTAGACCCAGGCCTTTGCCTCCTCCAGCTAGGGCCTATGACAGGAGGCCACCTGTTCCGGCCTACCCAAAGAGTAGCTTCAGAAGGGAATATAGTAGACGGGATGACCTTCCTCCTCCAAGGAGCAGAGCAGCGGCTGATTATGGTTCAAGGGCTGTGCCAGAGAGACGCCAGTCATATAGAGATGACTATAGTACACGTGGTCCTGCTTACGTTGACCCACCAAGAAGTACATCTCGTACAACAGCGAGGAGAGCTTATGTAGATGACAGTTATGGACAAAGGTTTGAAAGGCACCCTCCCCCACCTCCTAGTTACCACCGTGAAGGTCGTGCTCGTGATTACGACTCTATTTCTGGGTCAAAGCGTCCATACTCTGCTCTGGACGATGTTCCACCTCGATATGCTGATACTGGCATCCGCCAATCAAGGGCACGATTGGACTATGAATATGGAAGTGGTTCTTCTCAATATGGGGATGGCTATAGTGATAGAGTTGGGAGGTCTAGTTTAGGATATGGGAGCAGCAGGACAAGTCAGGATTCACATGGACTTTATAGCAGCCGTCAGAGCATGGGTTATGGAGGAGGTTCTTATGGTGGTAATGATGTTGGTGGGATGTACTCATCAAGCTACGGTGGTGATTATATGTCTCGTGGAAATGATGTTGGAGGTAGCTCTTACTCATCAATGTGGTTCCGGCTCATACTATTGAGATCTGAAATGACCAAGAGGCGCTCTAGGATGGGGACTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0007623 GO:0008150 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0030425 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0036477 GO:0042995 GO:0043005 GO:0043025 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045727 GO:0045934 GO:0048027 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070937 GO:0071204 GO:0080090 GO:0090365 GO:0090367 GO:0097159 GO:0097447 GO:0097458 GO:0120025 GO:0120038 GO:1901363 GO:1903311 GO:1903312 GO:1990635 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

814

Amino Acids

91.79

Weight (kDa)

5.41

Isoelectric Point (pI)

58.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	234 - 302	1.8e-17	RNA recognition motif
RRM_1	PF00076	314 - 380	7e-08	RNA recognition motif
RRM_1	PF00076	411 - 476	6.3e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44710 AT2G44710 AT2G44710 AT2G44710
fragaria_vesca	FvH4_7g09210
malus_domestica	MD02G1220100.v1.1 MD07G1096800.v1.1
prunus_persica	Prupe.2G120600_v2.0.a1 Prupe.2G120600_v2.0.a1 Prupe.2G120600_v2.0.a1 Prupe.2G120600_v2.0.a1
pyrus_communis	pycom02g18060 pycom07g07990
rosa_chinensis	RchiOBHm_Chr1g0345261
rosa_laevigata	RLG00000028843
rosa_multiflora	Rmu_sc0002329.1_g000009 Rmu_sc0003175.1_g000005 Rmu_sc0011244.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309150
rosa_rugosa	Rorug01G0177000
rosa_samantha	Rh1AG195100 Rh1BG161200 Rh1CG179500 Rh1DG191600
rosa_wichuraiana	Rw1G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1210, 1258
Acc65I	GGTACC	1 cut(s)	139
AccB1I	GGYRCC	3 cut(s)	139, 1560, 1980
AccI	GTMKAC	2 cut(s)	1582, 1783
AccII	CGCG	1 cut(s)	1670
AciI	CCGC	6 cut(s)	38, 212, 679, 1668, 1820, 2107
AclWI	GGATC	4 cut(s)	224, 303, 476, 489
AcsI	RAATTY	2 cut(s)	692, 1085
AcuI	CTGAAG	4 cut(s)	171, 1112, 1460, 1750
AcvI	CACGTG	1 cut(s)	1886
AcyI	GRCGYC	4 cut(s)	639, 1561, 1663, 1855
AfaI	GTAC	7 cut(s)	43, 141, 543, 1882, 1918, 1927, 2309
AfiI	CCNNNNNNNGG	7 cut(s)	91, 946, 1527, 1528, 1592, 1728, 2116
AflII	CTTAAG	1 cut(s)	1286
AflIII	ACRYGT	3 cut(s)	1394, 1495, 1883
AgeI	ACCGGT	1 cut(s)	142
AjnI	CCWGG	4 cut(s)	90, 453, 1198, 1694
AjuI	GAANNNNNNNTTGG	4 cut(s)	393, 425, 690, 722
Alw21I	GWGCWC	4 cut(s)	76, 168, 657, 2023
Alw26I	GTCTC	2 cut(s)	1846, 2343
AlwI	GGATC	4 cut(s)	224, 303, 476, 489
AlwNI	CAGNNNCTG	1 cut(s)	1823
AoxI	GGCC	9 cut(s)	81, 93, 1160, 1243, 1640, 1697, 1719, 1733, 1746
ApeKI	GCWGC	4 cut(s)	209, 1817, 2211, 2247
ApoI	RAATTY	2 cut(s)	692, 1085
AsiGI	ACCGGT	1 cut(s)	142
Asp700I	GAANNNNTTC	3 cut(s)	180, 305, 2146
Asp718I	GGTACC	1 cut(s)	139
AspLEI	GCGC	5 cut(s)	687, 1125, 1219, 1563, 2424
AspS9I	GGNCC	6 cut(s)	82, 94, 589, 1518, 1719, 1889
AsuII	TTCGAA	1 cut(s)	696
AvaII	GGWCC	3 cut(s)	589, 1518, 1889
AxyI	CCTNAGG	1 cut(s)	486
BaeGI	GKGCMC	1 cut(s)	2122
BamHI	GGATCC	1 cut(s)	481
BanI	GGYRCC	3 cut(s)	139, 1560, 1980
BanII	GRGCYC	2 cut(s)	76, 168
BauI	CACGAG	3 cut(s)	1379, 2022, 2340
BbrPI	CACGTG	1 cut(s)	1886
Bbv12I	GWGCWC	4 cut(s)	76, 168, 657, 2023
BbvCI	CCTCAGC	3 cut(s)	129, 462, 522
BbvI	GCAGC	4 cut(s)	196, 1829, 2223, 2259
BccI	CCATC	5 cut(s)	625, 1235, 1526, 2159, 2425
BceAI	ACGGC	3 cut(s)	319, 377, 2235
BcgI	CGANNNNNNTGC	2 cut(s)	676, 710
BciT130I	CCWGG	4 cut(s)	92, 455, 1200, 1696
BciVI	GTATCC	1 cut(s)	1628
BclI	TGATCA	1 cut(s)	891
BcoDI	GTCTC	2 cut(s)	1846, 2343
BfaI	CTAG	7 cut(s)	365, 497, 1689, 1716, 1998, 2193, 2427
BfmI	CTRYAG	3 cut(s)	336, 1876, 2170
BfoI	RGCGCY	3 cut(s)	1126, 1564, 2425
BfrI	CTTAAG	1 cut(s)	1286
BfuAI	ACCTGC	2 cut(s)	1210, 1258
BfuI	GTATCC	1 cut(s)	1628
BglI	GCCNNNNNGGC	1 cut(s)	458
BglII	AGATCT	1 cut(s)	2402
BisI	GCNGC	5 cut(s)	210, 1818, 1821, 2212, 2248
BlsI	GCNGC	5 cut(s)	211, 1819, 1822, 2213, 2249
Bme1390I	CCNGG	4 cut(s)	92, 455, 1200, 1696
Bme18I	GGWCC	3 cut(s)	589, 1518, 1889
BmgT120I	GGNCC	6 cut(s)	82, 94, 589, 1518, 1719, 1889
BmiI	GGNNCC	6 cut(s)	141, 483, 1520, 1562, 1982, 2384
BmrFI	CCNGG	4 cut(s)	92, 455, 1200, 1696
BmsI	GCATC	7 cut(s)	439, 715, 967, 1093, 1102, 1416, 2112
BoxI	GACNNNNGTC	1 cut(s)	1858
BpmI	CTGGAG	2 cut(s)	392, 1695
Bpu10I	CCTNAGC	5 cut(s)	129, 327, 462, 522, 1451
Bpu14I	TTCGAA	1 cut(s)	696
BpuEI	CTTGAG	1 cut(s)	152
BsaAI	YACGTR	2 cut(s)	1577, 1886
BsaBI	GATNNNNATC	1 cut(s)	480
BsaHI	GRCGYC	4 cut(s)	639, 1561, 1663, 1855
BsaWI	WCCGGW	1 cut(s)	142
BsaXI	ACNNNNNCTCC	2 cut(s)	2179, 2209
Bsc4I	CCNNNNNNNGG	7 cut(s)	91, 946, 1527, 1528, 1592, 1728, 2116
Bse118I	RCCGGY	1 cut(s)	142
Bse1I	ACTGG	5 cut(s)	233, 887, 1629, 1858, 2104
Bse21I	CCTNAGG	1 cut(s)	486
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	4 cut(s)	92, 455, 1200, 1696
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	7 cut(s)	91, 946, 1527, 1528, 1592, 1728, 2116
BseMII	CTCAG	7 cut(s)	120, 453, 477, 513, 768, 815, 1643
BseNI	ACTGG	5 cut(s)	233, 887, 1629, 1858, 2104
BseSI	GKGCMC	1 cut(s)	2122
BseXI	GCAGC	4 cut(s)	196, 1829, 2223, 2259
BseYI	CCCAGC	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	1670
BshFI	GGCC	9 cut(s)	83, 95, 1162, 1245, 1642, 1699, 1721, 1735, 1748
BshNI	GGYRCC	3 cut(s)	139, 1560, 1980
BshTI	ACCGGT	1 cut(s)	142
BsiHKAI	GWGCWC	4 cut(s)	76, 168, 657, 2023
BsiSI	CCGG	3 cut(s)	143, 1745, 2386
BslFI	GGGAC	3 cut(s)	1274, 1448, 1504
BslI	CCNNNNNNNGG	7 cut(s)	91, 946, 1527, 1528, 1592, 1728, 2116
BsmAI	GTCTC	2 cut(s)	1846, 2343
BsmBI	CGTCTC	1 cut(s)	1846
BsmFI	GGGAC	3 cut(s)	1274, 1448, 1504
BsmI	GAATGC	2 cut(s)	827, 1390
BsnI	GGCC	9 cut(s)	83, 95, 1162, 1245, 1642, 1699, 1721, 1735, 1748
Bsp119I	TTCGAA	1 cut(s)	696
Bsp1286I	GDGCHC	5 cut(s)	76, 168, 657, 2023, 2122
Bsp1407I	TGTACA	1 cut(s)	541
Bsp143I	GATC	8 cut(s)	229, 262, 295, 481, 739, 891, 1671, 2402
Bsp19I	CCATGG	1 cut(s)	1107
BspACI	CCGC	6 cut(s)	38, 212, 679, 1668, 1820, 2107
BspANI	GGCC	9 cut(s)	83, 95, 1162, 1245, 1642, 1699, 1721, 1735, 1748
BspCNI	CTCAG	7 cut(s)	121, 454, 478, 514, 769, 814, 1644
BspFNI	CGCG	1 cut(s)	1670
BspLI	GGNNCC	6 cut(s)	141, 483, 1520, 1562, 1982, 2384
BspMI	ACCTGC	2 cut(s)	1210, 1258
BspPI	GGATC	4 cut(s)	224, 303, 476, 489
BspT104I	TTCGAA	1 cut(s)	696
BspT107I	GGYRCC	3 cut(s)	139, 1560, 1980
BspTI	CTTAAG	1 cut(s)	1286
BsrFI	RCCGGY	1 cut(s)	142
BsrGI	TGTACA	1 cut(s)	541
BsrI	ACTGG	5 cut(s)	233, 887, 1629, 1858, 2104
BssAI	RCCGGY	1 cut(s)	142
BssMI	GATC	8 cut(s)	229, 262, 295, 481, 739, 891, 1671, 2402
BssNI	GRCGYC	4 cut(s)	639, 1561, 1663, 1855
BssSI	CACGAG	3 cut(s)	1379, 2022, 2340
BssT1I	CCWWGG	3 cut(s)	78, 1107, 1805
Bst2BI	CACGAG	3 cut(s)	1379, 2022, 2340
Bst2UI	CCWGG	4 cut(s)	92, 455, 1200, 1696
Bst4CI	ACNGT	9 cut(s)	16, 139, 273, 847, 1033, 1958, 2009, 2324, 2440
Bst6I	CTCTTC	4 cut(s)	14, 501, 642, 1631
BstACI	GRCGYC	4 cut(s)	639, 1561, 1663, 1855
BstAFI	CTTAAG	1 cut(s)	1286
BstAUI	TGTACA	1 cut(s)	541
BstBAI	YACGTR	2 cut(s)	1577, 1886
BstBI	TTCGAA	1 cut(s)	696
BstC8I	GCNNGC	4 cut(s)	618, 1164, 1320, 1324
BstDSI	CCRYGG	3 cut(s)	269, 1107, 1523
BstENI	CCTNNNNNAGG	1 cut(s)	1726
BstFNI	CGCG	1 cut(s)	1670
BstH2I	RGCGCY	3 cut(s)	1126, 1564, 2425
BstHHI	GCGC	5 cut(s)	687, 1125, 1219, 1563, 2424
BstKTI	GATC	8 cut(s)	232, 265, 298, 484, 742, 894, 1674, 2405
BstMAI	GTCTC	2 cut(s)	1846, 2343
BstMBI	GATC	8 cut(s)	229, 262, 295, 481, 739, 891, 1671, 2402
BstMWI	GCNNNNNNNGC	8 cut(s)	80, 106, 458, 734, 863, 1112, 1940, 2256
BstNI	CCWGG	4 cut(s)	92, 455, 1200, 1696
BstNSI	RCATGY	5 cut(s)	620, 626, 1333, 1398, 1499
BstPAI	GACNNNNGTC	1 cut(s)	1858
BstSCI	CCNGG	4 cut(s)	90, 453, 1198, 1694
BstSFI	CTRYAG	3 cut(s)	336, 1876, 2170
BstSLI	GKGCMC	1 cut(s)	2122
BstUI	CGCG	1 cut(s)	1670
BstV1I	GCAGC	4 cut(s)	196, 1829, 2223, 2259
BstX2I	RGATCY	3 cut(s)	229, 481, 2402
BstYI	RGATCY	3 cut(s)	229, 481, 2402
Bsu36I	CCTNAGG	1 cut(s)	486
BsuI	GTATCC	1 cut(s)	1628
BsuRI	GGCC	9 cut(s)	83, 95, 1162, 1245, 1642, 1699, 1721, 1735, 1748
BtgI	CCRYGG	3 cut(s)	269, 1107, 1523
BtsIMutI	CAGTG	2 cut(s)	894, 1636
BveI	ACCTGC	2 cut(s)	1210, 1258
Cac8I	GCNNGC	4 cut(s)	618, 1164, 1320, 1324
CaiI	CAGNNNCTG	1 cut(s)	1823
CfoI	GCGC	5 cut(s)	687, 1125, 1219, 1563, 2424
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	6 cut(s)	82, 94, 589, 1518, 1719, 1889
CseI	GACGC	4 cut(s)	647, 1671, 1863, 2042
Csp6I	GTAC	7 cut(s)	42, 140, 542, 1881, 1917, 1926, 2308
CspAI	ACCGGT	1 cut(s)	142
CviQI	GTAC	7 cut(s)	42, 140, 542, 1881, 1917, 1926, 2308
DinI	GGCGCC	1 cut(s)	1562
DpnI	GATC	8 cut(s)	231, 264, 297, 483, 741, 893, 1673, 2404
DpnII	GATC	8 cut(s)	229, 262, 295, 481, 739, 891, 1671, 2402
Eam1104I	CTCTTC	4 cut(s)	14, 501, 642, 1631
EarI	CTCTTC	4 cut(s)	14, 501, 642, 1631
EciI	GGCGGA	2 cut(s)	694, 2096
Ecl136II	GAGCTC	2 cut(s)	74, 166
Eco130I	CCWWGG	3 cut(s)	78, 1107, 1805
Eco147I	AGGCCT	3 cut(s)	1162, 1642, 1699
Eco24I	GRGCYC	2 cut(s)	76, 168
Eco47I	GGWCC	3 cut(s)	589, 1518, 1889
Eco53kI	GAGCTC	2 cut(s)	74, 166
Eco57I	CTGAAG	4 cut(s)	171, 1112, 1460, 1750
Eco72I	CACGTG	1 cut(s)	1886
Eco81I	CCTNAGG	1 cut(s)	486
EcoICRI	GAGCTC	2 cut(s)	74, 166
EcoNI	CCTNNNNNAGG	1 cut(s)	1726
EcoO109I	RGGNCCY	1 cut(s)	1719
EcoRI	GAATTC	1 cut(s)	692
EcoRII	CCWGG	4 cut(s)	90, 453, 1198, 1694
EcoT14I	CCWWGG	3 cut(s)	78, 1107, 1805
EcoT22I	ATGCAT	1 cut(s)	1390
EcoT38I	GRGCYC	2 cut(s)	76, 168
EgeI	GGCGCC	1 cut(s)	1562
EheI	GGCGCC	1 cut(s)	1562
ErhI	CCWWGG	3 cut(s)	78, 1107, 1805
Esp3I	CGTCTC	1 cut(s)	1846
FalI	AAGNNNNNCTT	6 cut(s)	726, 758, 1748, 1780, 2134, 2166
FaqI	GGGAC	3 cut(s)	1274, 1448, 1504
FauI	CCCGC	2 cut(s)	31, 1675
FbaI	TGATCA	1 cut(s)	891
FblI	GTMKAC	2 cut(s)	1582, 1783
Fnu4HI	GCNGC	5 cut(s)	210, 1818, 1821, 2212, 2248
FriOI	GRGCYC	2 cut(s)	76, 168
Fsp4HI	GCNGC	5 cut(s)	210, 1818, 1821, 2212, 2248
FspBI	CTAG	7 cut(s)	365, 497, 1689, 1716, 1998, 2193, 2427
GlaI	GCGC	5 cut(s)	686, 1124, 1218, 1562, 2423
GluI	GCNGC	5 cut(s)	210, 1818, 1821, 2212, 2248
GsaI	CCCAGC	1 cut(s)	100
GsuI	CTGGAG	2 cut(s)	392, 1695
HaeII	RGCGCY	3 cut(s)	1126, 1564, 2425
HaeIII	GGCC	9 cut(s)	83, 95, 1162, 1245, 1642, 1699, 1721, 1735, 1748
HapII	CCGG	3 cut(s)	143, 1745, 2386
HgaI	GACGC	4 cut(s)	647, 1671, 1863, 2042
HhaI	GCGC	5 cut(s)	687, 1125, 1219, 1563, 2424
Hin1I	GRCGYC	4 cut(s)	639, 1561, 1663, 1855
Hin6I	GCGC	5 cut(s)	685, 1123, 1217, 1561, 2422
HinP1I	GCGC	5 cut(s)	685, 1123, 1217, 1561, 2422
HincII	GTYRAC	2 cut(s)	637, 1903
HindII	GTYRAC	2 cut(s)	637, 1903
HindIII	AAGCTT	2 cut(s)	750, 1448
HinfI	GANTC	8 cut(s)	116, 181, 332, 493, 1063, 1184, 2033, 2228
HpaII	CCGG	3 cut(s)	143, 1745, 2386
Hpy166II	GTNNAC	5 cut(s)	637, 1583, 1784, 1883, 1903
Hpy188III	TCNNGA	8 cut(s)	185, 485, 926, 1379, 1467, 2024, 2069, 2225
Hpy8I	GTNNAC	5 cut(s)	637, 1583, 1784, 1883, 1903
Hpy99I	CGWCG	1 cut(s)	58
HpyCH4III	ACNGT	9 cut(s)	16, 139, 273, 847, 1033, 1958, 2009, 2324, 2440
HpyCH4IV	ACGT	3 cut(s)	1576, 1885, 1899
HpyF10VI	GCNNNNNNNGC	8 cut(s)	80, 106, 458, 734, 863, 1112, 1940, 2256
HpySE526I	ACGT	3 cut(s)	1576, 1885, 1899
Hsp92I	GRCGYC	4 cut(s)	639, 1561, 1663, 1855
HspAI	GCGC	5 cut(s)	685, 1123, 1217, 1561, 2422
KasI	GGCGCC	1 cut(s)	1560
KpnI	GGTACC	1 cut(s)	143
Ksp22I	TGATCA	1 cut(s)	891
Kzo9I	GATC	8 cut(s)	229, 262, 295, 481, 739, 891, 1671, 2402
LmnI	GCTCC	7 cut(s)	71, 79, 163, 574, 652, 1809, 2208
Lsp1109I	GCAGC	4 cut(s)	196, 1829, 2223, 2259
LweI	GCATC	7 cut(s)	439, 715, 967, 1093, 1102, 1416, 2112
MaeI	CTAG	7 cut(s)	365, 497, 1689, 1716, 1998, 2193, 2427
MaeII	ACGT	3 cut(s)	1576, 1885, 1899
MaeIII	GTNAC	5 cut(s)	133, 772, 913, 950, 2000
MalI	GATC	8 cut(s)	231, 264, 297, 483, 741, 893, 1673, 2404
MboI	GATC	8 cut(s)	229, 262, 295, 481, 739, 891, 1671, 2402
MflI	RGATCY	3 cut(s)	229, 481, 2402
MhlI	GDGCHC	5 cut(s)	76, 168, 657, 2023, 2122
MluCI	AATT	6 cut(s)	552, 692, 992, 1085, 1209, 1402
Mly113I	GGCGCC	1 cut(s)	1561
MlyI	GAGTC	3 cut(s)	125, 326, 2027
MmeI	TCCRAC	3 cut(s)	1588, 1627, 2335
Mph1103I	ATGCAT	1 cut(s)	1390
MroXI	GAANNNNTTC	3 cut(s)	180, 305, 2146
MseI	TTAA	4 cut(s)	879, 1224, 1287, 1598
MslI	CAYNNNNRTG	8 cut(s)	597, 603, 609, 615, 621, 1383, 1393, 2377
MspA1I	CMGCKG	1 cut(s)	1820
MspCI	CTTAAG	1 cut(s)	1286
MspI	CCGG	3 cut(s)	143, 1745, 2386
MspR9I	CCNGG	4 cut(s)	92, 455, 1200, 1696
Mva1269I	GAATGC	2 cut(s)	827, 1390
MvaI	CCWGG	4 cut(s)	92, 455, 1200, 1696
MvnI	CGCG	1 cut(s)	1670
MwoI	GCNNNNNNNGC	8 cut(s)	80, 106, 458, 734, 863, 1112, 1940, 2256
NarI	GGCGCC	1 cut(s)	1561
NcoI	CCATGG	1 cut(s)	1107
NdeII	GATC	8 cut(s)	229, 262, 295, 481, 739, 891, 1671, 2402
NlaIV	GGNNCC	6 cut(s)	141, 483, 1520, 1562, 1982, 2384
NmeAIII	GCCGAG	1 cut(s)	667
NmuCI	GTSAC	1 cut(s)	133
NsiI	ATGCAT	1 cut(s)	1390
NspI	RCATGY	5 cut(s)	620, 626, 1333, 1398, 1499
NspV	TTCGAA	1 cut(s)	696
PaeI	GCATGC	1 cut(s)	620
PceI	AGGCCT	3 cut(s)	1162, 1642, 1699
PciI	ACATGT	2 cut(s)	1394, 1495
PctI	GAATGC	2 cut(s)	827, 1390
PdmI	GAANNNNTTC	3 cut(s)	180, 305, 2146
PfeI	GAWTC	5 cut(s)	181, 493, 1063, 1184, 2228
PinAI	ACCGGT	1 cut(s)	142
PkrI	GCNGC	5 cut(s)	211, 1819, 1822, 2213, 2249
PleI	GAGTC	3 cut(s)	124, 326, 2027
PluTI	GGCGCC	1 cut(s)	1564
PmaCI	CACGTG	1 cut(s)	1886
PmlI	CACGTG	1 cut(s)	1886
PpsI	GAGTC	3 cut(s)	124, 326, 2027
Ppu21I	YACGTR	2 cut(s)	1577, 1886
PscI	ACATGT	2 cut(s)	1394, 1495
PshAI	GACNNNNGTC	1 cut(s)	1858
Psp124BI	GAGCTC	2 cut(s)	76, 168
Psp6I	CCWGG	4 cut(s)	90, 453, 1198, 1694
PspCI	CACGTG	1 cut(s)	1886
PspFI	CCCAGC	1 cut(s)	96
PspGI	CCWGG	4 cut(s)	90, 453, 1198, 1694
PspN4I	GGNNCC	6 cut(s)	141, 483, 1520, 1562, 1982, 2384
PspPI	GGNCC	6 cut(s)	82, 94, 589, 1518, 1719, 1889
PstNI	CAGNNNCTG	1 cut(s)	1823
PsuI	RGATCY	3 cut(s)	229, 481, 2402
RsaI	GTAC	7 cut(s)	43, 141, 543, 1882, 1918, 1927, 2309
RsaNI	GTAC	7 cut(s)	42, 140, 542, 1881, 1917, 1926, 2308
RseI	CAYNNNNRTG	8 cut(s)	597, 603, 609, 615, 621, 1383, 1393, 2377
SacI	GAGCTC	2 cut(s)	76, 168
SaqAI	TTAA	4 cut(s)	879, 1224, 1287, 1598
SatI	GCNGC	5 cut(s)	210, 1818, 1821, 2212, 2248
Sau3AI	GATC	8 cut(s)	229, 262, 295, 481, 739, 891, 1671, 2402
Sau96I	GGNCC	6 cut(s)	82, 94, 589, 1518, 1719, 1889
SchI	GAGTC	3 cut(s)	125, 326, 2027
ScrFI	CCNGG	4 cut(s)	92, 455, 1200, 1696
SduI	GDGCHC	5 cut(s)	76, 168, 657, 2023, 2122
SfaNI	GCATC	7 cut(s)	439, 715, 967, 1093, 1102, 1416, 2112
SfcI	CTRYAG	3 cut(s)	336, 1876, 2170
SfoI	GGCGCC	1 cut(s)	1562
SfuI	TTCGAA	1 cut(s)	696
SinI	GGWCC	3 cut(s)	589, 1518, 1889
SmiMI	CAYNNNNRTG	8 cut(s)	597, 603, 609, 615, 621, 1383, 1393, 2377
SmlI	CTYRAG	2 cut(s)	167, 1286
SmoI	CTYRAG	2 cut(s)	167, 1286
SphI	GCATGC	1 cut(s)	620
Sse9I	AATT	6 cut(s)	552, 692, 992, 1085, 1209, 1402
SseBI	AGGCCT	3 cut(s)	1162, 1642, 1699
SsiI	CCGC	6 cut(s)	38, 212, 679, 1668, 1820, 2107
SspDI	GGCGCC	1 cut(s)	1560
SspMI	CTAG	7 cut(s)	365, 497, 1689, 1716, 1998, 2193, 2427
SstI	GAGCTC	2 cut(s)	76, 168
StuI	AGGCCT	3 cut(s)	1162, 1642, 1699
StyD4I	CCNGG	4 cut(s)	90, 453, 1198, 1694
StyI	CCWWGG	3 cut(s)	78, 1107, 1805
TaaI	ACNGT	9 cut(s)	16, 139, 273, 847, 1033, 1958, 2009, 2324, 2440
TaiI	ACGT	3 cut(s)	1579, 1888, 1902
TaqI	TCGA	4 cut(s)	102, 282, 696, 2086
TaqII	GACCGA	1 cut(s)	1506
TasI	AATT	6 cut(s)	552, 692, 992, 1085, 1209, 1402
TatI	WGTACW	4 cut(s)	541, 1880, 1916, 2307
TauI	GCSGC	1 cut(s)	1823
TfiI	GAWTC	5 cut(s)	181, 493, 1063, 1184, 2228
Tru1I	TTAA	4 cut(s)	879, 1224, 1287, 1598
Tru9I	TTAA	4 cut(s)	879, 1224, 1287, 1598
TscAI	CASTG	2 cut(s)	894, 1636
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	4 cut(s)	209, 1817, 2211, 2247
Tsp45I	GTSAC	1 cut(s)	133
TspRI	CASTG	2 cut(s)	894, 1636
Vha464I	CTTAAG	1 cut(s)	1286
VpaK11BI	GGWCC	3 cut(s)	589, 1518, 1889
XagI	CCTNNNNNAGG	1 cut(s)	1726
XapI	RAATTY	2 cut(s)	692, 1085
XceI	RCATGY	5 cut(s)	620, 626, 1333, 1398, 1499
XmiI	GTMKAC	2 cut(s)	1582, 1783
XmnI	GAANNNNTTC	3 cut(s)	180, 305, 2146
XspI	CTAG	7 cut(s)	365, 497, 1689, 1716, 1998, 2193, 2427
Zsp2I	ATGCAT	1 cut(s)	1390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.