Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007307

Physical Location & Seq

Genomic Coordinates Reverse (-)

24271853 .. 24272368

Gene Structure 516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0177000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCCATAAACAATCGGATGTTTCTCAGCGATGTGAGCGACATGGACTTGGATCTTCTCGAGCAGATCTTACCTCACTGTTTCAAGACGCATTTGATCCATATAGAGAAGTCCACAAAAGACAGAGATCTGAGTCCGGTGACTGATAAGCTGTGGAAGAGTTTCTATGAGAAGGAGTTTGGAATTGAATCCACCGATTCAGTTTCAGAGATAATGAAGGAGTGGAATCTCAAGTTTAATTGGTCGGAGTTGTACCAGGAGAAATCAAAGAGAGTGAAAGAGGCTGAGAAGAAAGAAGATGACAGGAAACTGAGCCGGCAAGTTAGGGTTTGCAAGAAGGTTCCACCATCTTCAAGTGATAAAAGAAACAGGCCAAAGAGCAAGTTGATGAAGAAAATTGTTAAGGAGTATTTACATGAAATGTCTGGAGATGCGAAACATATGAGTTATGGAAAAAGAAGAAAAAGAAAGTTGATGAGCTATGAATATTCGAGGTGCCAAGGGTGCTTTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0007623 GO:0008150 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0030425 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0036477 GO:0042995 GO:0043005 GO:0043025 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045727 GO:0045934 GO:0048027 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070937 GO:0071204 GO:0080090 GO:0090365 GO:0090367 GO:0097159 GO:0097447 GO:0097458 GO:0120025 GO:0120038 GO:1901363 GO:1903311 GO:1903312 GO:1990635 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

171

Amino Acids

20.51

Weight (kDa)

9.52

Isoelectric Point (pI)

55.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Elongin_A	PF06881	10 - 107	1.3e-15	RNA polymerase II transcription factor SIII (Elongin) subunit A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44710 AT2G44710 AT2G44710 AT2G44710
fragaria_vesca	FvH4_7g09210
malus_domestica	MD02G1220100.v1.1 MD07G1096800.v1.1
prunus_persica	Prupe.2G120600_v2.0.a1 Prupe.2G120600_v2.0.a1 Prupe.2G120600_v2.0.a1 Prupe.2G120600_v2.0.a1
pyrus_communis	pycom02g18060 pycom07g07990
rosa_chinensis	RchiOBHm_Chr1g0345261
rosa_laevigata	RLG00000028843
rosa_multiflora	Rmu_sc0002329.1_g000009 Rmu_sc0003175.1_g000005 Rmu_sc0011244.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309150
rosa_rugosa	Rorug01G0177000
rosa_samantha	Rh1AG195100 Rh1BG161200 Rh1CG179500 Rh1DG191600
rosa_wichuraiana	Rw1G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	495
AclWI	GGATC	2 cut(s)	60, 91
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	85, 188, 354
AjnI	CCWGG	1 cut(s)	255
AjuI	GAANNNNNNNTTGG	1 cut(s)	492
AluBI	AGCT	2 cut(s)	151, 480
AluI	AGCT	2 cut(s)	151, 480
AlwI	GGATC	2 cut(s)	60, 91
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	2 cut(s)	3, 371
Asp700I	GAANNNNTTC	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	151
AvaI	CYCGRG	1 cut(s)	59
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	495
BccI	CCATC	1 cut(s)	355
BciT130I	CCWGG	1 cut(s)	257
BglII	AGATCT	2 cut(s)	66, 127
Bme1390I	CCNGG	1 cut(s)	257
BmeT110I	CYCGRG	1 cut(s)	59
BmiI	GGNNCC	2 cut(s)	342, 497
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	1 cut(s)	421
BpmI	CTGGAG	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	499
BsaWI	WCCGGW	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	499
BseGI	GGATG	1 cut(s)	24
BseMII	CTCAG	4 cut(s)	40, 122, 276, 302
BshFI	GGCC	2 cut(s)	5, 373
BshNI	GGYRCC	1 cut(s)	495
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	137, 316
BsnI	GGCC	2 cut(s)	5, 373
BsoBI	CYCGRG	1 cut(s)	59
Bsp143I	GATC	4 cut(s)	52, 66, 96, 127
BspANI	GGCC	2 cut(s)	5, 373
BspCNI	CTCAG	4 cut(s)	39, 123, 277, 303
BspLI	GGNNCC	2 cut(s)	342, 497
BspPI	GGATC	2 cut(s)	60, 91
BspT107I	GGYRCC	1 cut(s)	495
BsrFI	RCCGGY	1 cut(s)	315
BssAI	RCCGGY	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	499
BssMI	GATC	4 cut(s)	52, 66, 96, 127
BssT1I	CCWWGG	1 cut(s)	499
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	4 cut(s)	26, 131, 285, 311
BstF5I	GGATG	1 cut(s)	24
BstKTI	GATC	4 cut(s)	55, 69, 99, 130
BstMBI	GATC	4 cut(s)	52, 66, 96, 127
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 504
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	255
BstX2I	RGATCY	3 cut(s)	52, 66, 127
BstYI	RGATCY	3 cut(s)	52, 66, 127
BsuRI	GGCC	2 cut(s)	5, 373
BtgZI	GCGATG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	317
Cfr10I	RCCGGY	1 cut(s)	315
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	2 cut(s)	43, 416
CviJI	RGCY	6 cut(s)	5, 151, 284, 315, 373, 480
CviKI_1	RGCY	6 cut(s)	5, 151, 284, 315, 373, 480
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	4 cut(s)	26, 131, 285, 311
DpnI	GATC	4 cut(s)	54, 68, 98, 129
DpnII	GATC	4 cut(s)	52, 66, 96, 127
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	499
Eco88I	CYCGRG	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	2 cut(s)	46, 419
FatI	CATG	2 cut(s)	42, 415
FauNDI	CATATG	1 cut(s)	441
FokI	GGATG	1 cut(s)	31
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	5, 373
HapII	CCGG	2 cut(s)	137, 316
HgaI	GACGC	1 cut(s)	97
Hin1II	CATG	2 cut(s)	46, 419
HinfI	GANTC	4 cut(s)	133, 188, 197, 226
HpaII	CCGG	2 cut(s)	137, 316
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	4 cut(s)	18, 132, 208, 247
Hpy188III	TCNNGA	3 cut(s)	59, 85, 426
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	3 cut(s)	166, 211, 331
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4V	TGCA	1 cut(s)	333
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 504
HpyF3I	CTNAG	4 cut(s)	26, 131, 285, 311
Hsp92II	CATG	2 cut(s)	46, 419
KroI	GCCGGC	1 cut(s)	315
KroNI	GCCGGC	1 cut(s)	317
Kzo9I	GATC	4 cut(s)	52, 66, 96, 127
LpnPI	CCDG	7 cut(s)	150, 242, 269, 289, 329, 355, 411
LweI	GCATC	1 cut(s)	421
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	4 cut(s)	54, 68, 98, 129
MboI	GATC	4 cut(s)	52, 66, 96, 127
MboII	GAAGA	7 cut(s)	47, 169, 301, 308, 342, 403, 471
MflI	RGATCY	3 cut(s)	52, 66, 127
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	183, 238, 396
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	3 cut(s)	84, 274, 486
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	315
MroXI	GAANNNNTTC	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	237, 402
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	137, 316
MspR9I	CCNGG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	2 cut(s)	36, 504
NaeI	GCCGGC	1 cut(s)	317
NdeI	CATATG	1 cut(s)	441
NdeII	GATC	4 cut(s)	52, 66, 96, 127
NgoMIV	GCCGGC	1 cut(s)	315
NlaIII	CATG	2 cut(s)	46, 419
NlaIV	GGNNCC	2 cut(s)	342, 497
NmuCI	GTSAC	1 cut(s)	139
PaeR7I	CTCGAG	1 cut(s)	59
PdiI	GCCGGC	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	3 cut(s)	188, 197, 226
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	342, 497
PsuI	RGATCY	3 cut(s)	52, 66, 127
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SaqAI	TTAA	2 cut(s)	237, 402
Sau3AI	GATC	4 cut(s)	52, 66, 96, 127
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	257
SetI	ASST	5 cut(s)	76, 153, 342, 482, 497
SfaNI	GCATC	1 cut(s)	421
Sfr274I	CTCGAG	1 cut(s)	59
SlaI	CTCGAG	1 cut(s)	59
SmlI	CTYRAG	2 cut(s)	59, 230
SmoI	CTYRAG	2 cut(s)	59, 230
Sse9I	AATT	3 cut(s)	183, 238, 396
SspI	AATATT	1 cut(s)	488
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	499
TaaI	ACNGT	1 cut(s)	80
TaqI	TCGA	2 cut(s)	60, 491
TasI	AATT	3 cut(s)	183, 238, 396
TfiI	GAWTC	3 cut(s)	188, 197, 226
Tru1I	TTAA	2 cut(s)	237, 402
Tru9I	TTAA	2 cut(s)	237, 402
TscAI	CASTG	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	139
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	4 cut(s)	230, 404, 432, 498
TspRI	CASTG	1 cut(s)	83
XhoI	CTCGAG	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.