Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007307

Physical Location & Seq

Genomic Coordinates Reverse (-)

30797274 .. 30801788

Gene Structure 4515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00309150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2478 bp

ATGCCTCCGAGGACGGTGAAGAGAGGTTCGGGGTCGGCGGGTACTAAGAGGGCGACGAGGGCTACCAGAGGAGCGCCCAAGGCCCAGAACCAGGCCCAGCCCGATGTGCCTGACGAGTCAATGAAGGCTGAGGTCACGGTGCCGGTGGCTGAAGGTAAAGAGGAGCTCAAGGGTGAAAGGATTCAAGAGAAGCCGATTGTGGAGGAAGCTGCGGTGGTTGTGGAGGAAGATCCAGTTGTTGAGGAGAAGCCTGTTGCTATTGATCGCCCAGGGTTTGAAGTCGATGCGAAATCGGATCAGAACGGCTTCAAAAAACTTGAGTCTCTTTTCACTGGAGGAATCATCAACCTTGATTTTATGGCAGAGCAAGATAAGGCTAAGGACTCTATAGATGATTATGAAAAAGATGAACGGCTAGAGCTGGAGGATAATGAACCTGAATATGAACCCGAAGAATATGTTGGGGTTGATTACGATGAGAAGGAGATTGAACAAGAGGATGCCCAGGAGGCTGAGGATGAAGGAGATGAGGATCCTGAGGAGAATCTAGGTGAAGAAGAGGGTGATATGGCTGAGGAGGAAATGGAAGATGTACATGAAGAAATTGAAGGTGAAGAATATGAGGAGCATGGTGGTGACGACCATGACCATGAGCATGAGCATGAGCATGCACATGCACAGATGGTTGACACCGAGGAAGAGGAGCACCATGAAGTTGTGAAAGAGAGGCGGAAGCGCAAGGAATTCGAAGTGTTTGTTGGTGGCTTAGACAAGGATGCAGATGAAGCTGATCTTAGGAAAGCTTTTGGTGTAGTTGGTGAGGTTACTGAGGTTAGATTGATGATGAACCCTCAGACTAAGAAGAACAAGGGATTTGCATTCTTGCGTTTTGCAACTGTGGAACAAGCAAAACGAGCTGTTAGAGAGCTTAAACATCCAGTGATCAATGGGAAACAATGTGGTGTTACTCCAAGTCAAGATAGTGATACCCTTTTTCTGGGCAACATCTGCAAAACATGGTCAAAGGATGCTTTGAAGGAGAAATTGAAACATTATGGAGTAGATAATGTTGAGGATTTGACAGTAGTTGAAGATACTAATAATGAGGGAATGAATCGGGGCTTTGCTTTTTGGAATTTTCATCTCGCTCCGATGCCATGGATGCCTTCAAGCGCCTTCAGAAAAGAGATATTGTGTTTGGAGTTGAAAGGCCTGCAAAGGTTTCTTTTGCAGATTCCTTCATTGACCCTGGTTAAAACTATATTTGTGGATGGCCTACCTGCTTCTTGGGACGAGGATTATGTTCAACAGCTTCTTAAGGACTATGGGGAGATTGAAAAGATAGAGCTTGCTCGCAACATGCCTTCTGCCAAGAGGAAGGATTTTGGTTTTATTACATTTGACACTCACGAGAATGCATTGACATGTGCTAATTGCATCAACAATGCAGAAATAGGTGAAGGGGACAACAAGGCAAAGCTTAGGGCAAGGTTGTCAAGACCCCTTCAGAGAGGGAAAGGCAAACATGTAGGTCGTGGTGATTATCGGTCCCCACGGGGGGATGGACGAGTTATTAGGGGTTCATGGGGGCGCCCTACACCACCACGTAGTCTACCTATGCGTGGATTAAGAGGAGTTGGAAGTCGTATCCCACCAGCCAGTGTGAAGAGGCCTGTTGGACTGAGAGATAGACGCCCTGCGATCTCGTCTTATCCTGCTAGACCCAGGCCTTTGCCTCCTCCAGCTAGGTCTTATGACAGGAGGCCACCTGTTCCGGCCTACCCAAAGAGTAGCTTCAGAAGGGAATATAGTAGACGGGATGACCTTCCTCCTCCAAGGAGCAGAGCAGCGGCTGAATATGGTTCAAGGGCTGTGCCAGAGAGACGCCAGTCATATAGAGATGACTATAGTACACGTGGTCCTGCCTACGTTGACCCACCAAGAAGTACATCTCGTACAACGGCGAGGAGAGCTTATGTAGATGACAGTTATGGACAAAGGTTTGAAAGGCACCCTCCCCCACCTCCTCCTAGTTACCACCGTGAAGGTCGTGCTCGTGATTACGACTCTATTTCTGGGTCAAAGCGTCCATACTCTGCTCTGGACGATGTTCCACCTCGATATGCTGATGCTGGCATCCGCCAATCAAGGGCACGATTGGACTATGAATATGGAAGTGGTTCTTCTCAATATGGGGATGGCTATAGTGATAGAGTTGGGAGGTCTAGTTTAGGATATGGGAGCAGCAGGACAAGTCAGGATTCACATGGACTTTATAGCAGCCGTCAGAGCATGGGTTATGGAGGAGGTTCTTATGGTGGTAATGATGTTGGTGGAATGTACTCATCAAGCTACGGTGGTGATTATATGTCTCGTGGAAATGATGTTGGAGGTAGCTCTTACTCATCAATGTACTCTGGTCGTGGTGTTGGTGGAAGCAGTTATATGGGTTCAGGTGGTTCGGGCTCATACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0007623 GO:0008150 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0030425 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0036477 GO:0042995 GO:0043005 GO:0043025 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045727 GO:0045934 GO:0048027 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070937 GO:0071204 GO:0080090 GO:0090365 GO:0090367 GO:0097159 GO:0097447 GO:0097458 GO:0120025 GO:0120038 GO:1901363 GO:1903311 GO:1903312 GO:1990635 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

825

Amino Acids

92.34

Weight (kDa)

5.29

Isoelectric Point (pI)

58.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	251 - 319	1.8e-17	RNA recognition motif
RRM_1	PF00076	421 - 486	6.4e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44710 AT2G44710 AT2G44710 AT2G44710
fragaria_vesca	FvH4_7g09210
malus_domestica	MD02G1220100.v1.1 MD07G1096800.v1.1
prunus_persica	Prupe.2G120600_v2.0.a1 Prupe.2G120600_v2.0.a1 Prupe.2G120600_v2.0.a1 Prupe.2G120600_v2.0.a1
pyrus_communis	pycom02g18060 pycom07g07990
rosa_chinensis	RchiOBHm_Chr1g0345261
rosa_laevigata	RLG00000028843
rosa_multiflora	Rmu_sc0002329.1_g000009 Rmu_sc0003175.1_g000005 Rmu_sc0011244.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309150
rosa_rugosa	Rorug01G0177000
rosa_samantha	Rh1AG195100 Rh1BG161200 Rh1CG179500 Rh1DG191600
rosa_wichuraiana	Rw1G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1288
AccB1I	GGYRCC	3 cut(s)	139, 1590, 2010
AccI	GTMKAC	2 cut(s)	1612, 1813
AciI	CCGC	5 cut(s)	38, 212, 730, 1850, 2140
AclWI	GGATC	4 cut(s)	224, 303, 527, 540
AcsI	RAATTY	2 cut(s)	743, 1135
AcuI	CTGAAG	4 cut(s)	171, 1162, 1490, 1780
AcvI	CACGTG	1 cut(s)	1916
AcyI	GRCGYC	3 cut(s)	1591, 1693, 1885
AfaI	GTAC	7 cut(s)	43, 594, 1912, 1948, 1957, 2342, 2414
AfiI	CCNNNNNNNGG	6 cut(s)	91, 997, 1557, 1558, 1622, 2149
AflII	CTTAAG	1 cut(s)	1316
AflIII	ACRYGT	3 cut(s)	1424, 1525, 1913
AjnI	CCWGG	5 cut(s)	90, 268, 504, 1248, 1724
AjuI	GAANNNNNNNTTGG	4 cut(s)	444, 476, 741, 773
Alw21I	GWGCWC	3 cut(s)	168, 708, 2056
Alw26I	GTCTC	3 cut(s)	327, 1876, 2376
AlwI	GGATC	4 cut(s)	224, 303, 527, 540
AlwNI	CAGNNNCTG	1 cut(s)	1853
AoxI	GGCC	8 cut(s)	81, 93, 1210, 1273, 1670, 1727, 1763, 1776
ApeKI	GCWGC	4 cut(s)	209, 1847, 2244, 2280
ApoI	RAATTY	2 cut(s)	743, 1135
Asp700I	GAANNNNTTC	3 cut(s)	180, 305, 2179
AspLEI	GCGC	4 cut(s)	76, 738, 1175, 1593
AspS9I	GGNCC	4 cut(s)	82, 94, 1548, 1919
AsuII	TTCGAA	1 cut(s)	747
AvaII	GGWCC	2 cut(s)	1548, 1919
AxyI	CCTNAGG	1 cut(s)	537
BaeGI	GKGCMC	1 cut(s)	2155
BamHI	GGATCC	1 cut(s)	532
BanI	GGYRCC	3 cut(s)	139, 1590, 2010
BanII	GRGCYC	2 cut(s)	168, 2468
BauI	CACGAG	3 cut(s)	1409, 2055, 2373
BbrPI	CACGTG	1 cut(s)	1916
Bbv12I	GWGCWC	3 cut(s)	168, 708, 2056
BbvCI	CCTCAGC	3 cut(s)	129, 513, 573
BbvI	GCAGC	4 cut(s)	196, 1859, 2256, 2292
BccI	CCATC	4 cut(s)	676, 1265, 1556, 2192
BceAI	ACGGC	4 cut(s)	319, 428, 1977, 2268
BcgI	CGANNNNNNTGC	2 cut(s)	727, 761
BciT130I	CCWGG	5 cut(s)	92, 270, 506, 1250, 1726
BciVI	GTATCC	1 cut(s)	1658
BclI	TGATCA	1 cut(s)	942
BcoDI	GTCTC	3 cut(s)	327, 1876, 2376
BfaI	CTAG	6 cut(s)	416, 548, 1719, 1746, 2031, 2226
BfmI	CTRYAG	3 cut(s)	387, 1906, 2203
BfoI	RGCGCY	3 cut(s)	77, 1176, 1594
BfrI	CTTAAG	1 cut(s)	1316
BfuAI	ACCTGC	1 cut(s)	1288
BfuI	GTATCC	1 cut(s)	1658
BglI	GCCNNNNNGGC	1 cut(s)	509
BisI	GCNGC	5 cut(s)	210, 1848, 1851, 2245, 2281
BlsI	GCNGC	5 cut(s)	211, 1849, 1852, 2246, 2282
Bme1390I	CCNGG	5 cut(s)	92, 270, 506, 1250, 1726
Bme18I	GGWCC	2 cut(s)	1548, 1919
BmgT120I	GGNCC	4 cut(s)	82, 94, 1548, 1919
BmiI	GGNNCC	5 cut(s)	141, 534, 1550, 1592, 2012
BmrFI	CCNGG	5 cut(s)	92, 270, 506, 1250, 1726
BmsI	GCATC	9 cut(s)	274, 490, 766, 1018, 1143, 1152, 1446, 2119, 2145
BoxI	GACNNNNGTC	1 cut(s)	1888
BpmI	CTGGAG	3 cut(s)	354, 443, 1725
Bpu10I	CCTNAGC	5 cut(s)	129, 378, 513, 573, 1481
Bpu14I	TTCGAA	1 cut(s)	747
BpuEI	CTTGAG	2 cut(s)	152, 338
BsaAI	YACGTR	2 cut(s)	1607, 1916
BsaBI	GATNNNNATC	1 cut(s)	531
BsaHI	GRCGYC	3 cut(s)	1591, 1693, 1885
BsaXI	ACNNNNNCTCC	2 cut(s)	2212, 2242
Bsc4I	CCNNNNNNNGG	6 cut(s)	91, 997, 1557, 1558, 1622, 2149
Bse118I	RCCGGY	1 cut(s)	142
Bse1I	ACTGG	5 cut(s)	233, 337, 938, 1659, 1888
Bse21I	CCTNAGG	1 cut(s)	537
Bse8I	GATNNNNATC	1 cut(s)	531
BseBI	CCWGG	5 cut(s)	92, 270, 506, 1250, 1726
BseJI	GATNNNNATC	1 cut(s)	531
BseLI	CCNNNNNNNGG	6 cut(s)	91, 997, 1557, 1558, 1622, 2149
BseMII	CTCAG	7 cut(s)	120, 504, 528, 564, 819, 866, 1673
BseNI	ACTGG	5 cut(s)	233, 337, 938, 1659, 1888
BseSI	GKGCMC	1 cut(s)	2155
BseXI	GCAGC	4 cut(s)	196, 1859, 2256, 2292
BseYI	CCCAGC	1 cut(s)	96
BshFI	GGCC	8 cut(s)	83, 95, 1212, 1275, 1672, 1729, 1765, 1778
BshNI	GGYRCC	3 cut(s)	139, 1590, 2010
BsiHKAI	GWGCWC	3 cut(s)	168, 708, 2056
BsiSI	CCGG	2 cut(s)	143, 1775
BslFI	GGGAC	3 cut(s)	1304, 1478, 1534
BslI	CCNNNNNNNGG	6 cut(s)	91, 997, 1557, 1558, 1622, 2149
BsmAI	GTCTC	3 cut(s)	327, 1876, 2376
BsmBI	CGTCTC	1 cut(s)	1876
BsmFI	GGGAC	3 cut(s)	1304, 1478, 1534
BsmI	GAATGC	2 cut(s)	878, 1420
BsnI	GGCC	8 cut(s)	83, 95, 1212, 1275, 1672, 1729, 1765, 1778
Bsp119I	TTCGAA	1 cut(s)	747
Bsp1286I	GDGCHC	5 cut(s)	168, 708, 2056, 2155, 2468
Bsp1407I	TGTACA	1 cut(s)	592
Bsp143I	GATC	7 cut(s)	229, 262, 295, 532, 790, 942, 1701
Bsp19I	CCATGG	1 cut(s)	1157
BspACI	CCGC	5 cut(s)	38, 212, 730, 1850, 2140
BspANI	GGCC	8 cut(s)	83, 95, 1212, 1275, 1672, 1729, 1765, 1778
BspCNI	CTCAG	7 cut(s)	121, 505, 529, 565, 820, 865, 1674
BspLI	GGNNCC	5 cut(s)	141, 534, 1550, 1592, 2012
BspMI	ACCTGC	1 cut(s)	1288
BspPI	GGATC	4 cut(s)	224, 303, 527, 540
BspT104I	TTCGAA	1 cut(s)	747
BspT107I	GGYRCC	3 cut(s)	139, 1590, 2010
BspTI	CTTAAG	1 cut(s)	1316
BsrFI	RCCGGY	1 cut(s)	142
BsrGI	TGTACA	1 cut(s)	592
BsrI	ACTGG	5 cut(s)	233, 337, 938, 1659, 1888
BssAI	RCCGGY	1 cut(s)	142
BssMI	GATC	7 cut(s)	229, 262, 295, 532, 790, 942, 1701
BssNI	GRCGYC	3 cut(s)	1591, 1693, 1885
BssSI	CACGAG	3 cut(s)	1409, 2055, 2373
BssT1I	CCWWGG	3 cut(s)	78, 1157, 1835
Bst2BI	CACGAG	3 cut(s)	1409, 2055, 2373
Bst2UI	CCWGG	5 cut(s)	92, 270, 506, 1250, 1726
Bst4CI	ACNGT	7 cut(s)	16, 139, 898, 1084, 1988, 2042, 2357
Bst6I	CTCTTC	4 cut(s)	14, 552, 693, 1661
BstACI	GRCGYC	3 cut(s)	1591, 1693, 1885
BstAFI	CTTAAG	1 cut(s)	1316
BstAPI	GCANNNNNTGC	1 cut(s)	1008
BstAUI	TGTACA	1 cut(s)	592
BstBAI	YACGTR	2 cut(s)	1607, 1916
BstBI	TTCGAA	1 cut(s)	747
BstC8I	GCNNGC	5 cut(s)	669, 1214, 1350, 1354, 2134
BstDSI	CCRYGG	2 cut(s)	1157, 1553
BstH2I	RGCGCY	3 cut(s)	77, 1176, 1594
BstHHI	GCGC	4 cut(s)	76, 738, 1175, 1593
BstKTI	GATC	7 cut(s)	232, 265, 298, 535, 793, 945, 1704
BstMAI	GTCTC	3 cut(s)	327, 1876, 2376
BstMBI	GATC	7 cut(s)	229, 262, 295, 532, 790, 942, 1701
BstNI	CCWGG	5 cut(s)	92, 270, 506, 1250, 1726
BstNSI	RCATGY	5 cut(s)	671, 677, 1363, 1428, 1529
BstPAI	GACNNNNGTC	1 cut(s)	1888
BstSCI	CCNGG	5 cut(s)	90, 268, 504, 1248, 1724
BstSFI	CTRYAG	3 cut(s)	387, 1906, 2203
BstSLI	GKGCMC	1 cut(s)	2155
BstV1I	GCAGC	4 cut(s)	196, 1859, 2256, 2292
BstX2I	RGATCY	2 cut(s)	229, 532
BstYI	RGATCY	2 cut(s)	229, 532
Bsu36I	CCTNAGG	1 cut(s)	537
BsuI	GTATCC	1 cut(s)	1658
BsuRI	GGCC	8 cut(s)	83, 95, 1212, 1275, 1672, 1729, 1765, 1778
BtgI	CCRYGG	2 cut(s)	1157, 1553
BtsIMutI	CAGTG	3 cut(s)	330, 945, 1666
BveI	ACCTGC	1 cut(s)	1288
Cac8I	GCNNGC	5 cut(s)	669, 1214, 1350, 1354, 2134
CaiI	CAGNNNCTG	1 cut(s)	1853
CfoI	GCGC	4 cut(s)	76, 738, 1175, 1593
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	4 cut(s)	82, 94, 1548, 1919
CseI	GACGC	3 cut(s)	1701, 1893, 2075
Csp6I	GTAC	7 cut(s)	42, 593, 1911, 1947, 1956, 2341, 2413
CviQI	GTAC	7 cut(s)	42, 593, 1911, 1947, 1956, 2341, 2413
DinI	GGCGCC	1 cut(s)	1592
DpnI	GATC	7 cut(s)	231, 264, 297, 534, 792, 944, 1703
DpnII	GATC	7 cut(s)	229, 262, 295, 532, 790, 942, 1701
Eam1104I	CTCTTC	4 cut(s)	14, 552, 693, 1661
EarI	CTCTTC	4 cut(s)	14, 552, 693, 1661
EciI	GGCGGA	2 cut(s)	745, 2129
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	3 cut(s)	78, 1157, 1835
Eco147I	AGGCCT	3 cut(s)	1212, 1672, 1729
Eco24I	GRGCYC	2 cut(s)	168, 2468
Eco47I	GGWCC	2 cut(s)	1548, 1919
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	4 cut(s)	171, 1162, 1490, 1780
Eco72I	CACGTG	1 cut(s)	1916
Eco81I	CCTNAGG	1 cut(s)	537
EcoICRI	GAGCTC	1 cut(s)	166
EcoRI	GAATTC	1 cut(s)	743
EcoRII	CCWGG	5 cut(s)	90, 268, 504, 1248, 1724
EcoT14I	CCWWGG	3 cut(s)	78, 1157, 1835
EcoT22I	ATGCAT	1 cut(s)	1420
EcoT38I	GRGCYC	2 cut(s)	168, 2468
EgeI	GGCGCC	1 cut(s)	1592
EheI	GGCGCC	1 cut(s)	1592
ErhI	CCWWGG	3 cut(s)	78, 1157, 1835
Esp3I	CGTCTC	1 cut(s)	1876
FalI	AAGNNNNNCTT	6 cut(s)	777, 809, 1778, 1810, 2167, 2199
FaqI	GGGAC	3 cut(s)	1304, 1478, 1534
FauI	CCCGC	1 cut(s)	31
FbaI	TGATCA	1 cut(s)	942
FblI	GTMKAC	2 cut(s)	1612, 1813
Fnu4HI	GCNGC	5 cut(s)	210, 1848, 1851, 2245, 2281
FriOI	GRGCYC	2 cut(s)	168, 2468
Fsp4HI	GCNGC	5 cut(s)	210, 1848, 1851, 2245, 2281
FspBI	CTAG	6 cut(s)	416, 548, 1719, 1746, 2031, 2226
GlaI	GCGC	4 cut(s)	75, 737, 1174, 1592
GluI	GCNGC	5 cut(s)	210, 1848, 1851, 2245, 2281
GsaI	CCCAGC	1 cut(s)	100
GsuI	CTGGAG	3 cut(s)	354, 443, 1725
HaeII	RGCGCY	3 cut(s)	77, 1176, 1594
HaeIII	GGCC	8 cut(s)	83, 95, 1212, 1275, 1672, 1729, 1765, 1778
HapII	CCGG	2 cut(s)	143, 1775
HgaI	GACGC	3 cut(s)	1701, 1893, 2075
HhaI	GCGC	4 cut(s)	76, 738, 1175, 1593
Hin1I	GRCGYC	3 cut(s)	1591, 1693, 1885
Hin6I	GCGC	4 cut(s)	74, 736, 1173, 1591
HinP1I	GCGC	4 cut(s)	74, 736, 1173, 1591
HincII	GTYRAC	2 cut(s)	688, 1933
HindII	GTYRAC	2 cut(s)	688, 1933
HindIII	AAGCTT	2 cut(s)	801, 1478
HpaII	CCGG	2 cut(s)	143, 1775
Hpy166II	GTNNAC	5 cut(s)	688, 1613, 1814, 1913, 1933
Hpy188I	TCNGA	9 cut(s)	9, 295, 300, 855, 1152, 1181, 1509, 1799, 2289
Hpy188III	TCNNGA	8 cut(s)	185, 536, 977, 1409, 1497, 2057, 2102, 2258
Hpy8I	GTNNAC	5 cut(s)	688, 1613, 1814, 1913, 1933
Hpy99I	CGWCG	1 cut(s)	58
HpyCH4III	ACNGT	7 cut(s)	16, 139, 898, 1084, 1988, 2042, 2357
HpyCH4IV	ACGT	3 cut(s)	1606, 1915, 1929
HpySE526I	ACGT	3 cut(s)	1606, 1915, 1929
Hsp92I	GRCGYC	3 cut(s)	1591, 1693, 1885
HspAI	GCGC	4 cut(s)	74, 736, 1173, 1591
KasI	GGCGCC	1 cut(s)	1590
Ksp22I	TGATCA	1 cut(s)	942
Kzo9I	GATC	7 cut(s)	229, 262, 295, 532, 790, 942, 1701
LmnI	GCTCC	7 cut(s)	71, 163, 625, 703, 1153, 1839, 2241
Lsp1109I	GCAGC	4 cut(s)	196, 1859, 2256, 2292
LweI	GCATC	9 cut(s)	274, 490, 766, 1018, 1143, 1152, 1446, 2119, 2145
MaeI	CTAG	6 cut(s)	416, 548, 1719, 1746, 2031, 2226
MaeII	ACGT	3 cut(s)	1606, 1915, 1929
MaeIII	GTNAC	5 cut(s)	133, 635, 823, 964, 2033
MalI	GATC	7 cut(s)	231, 264, 297, 534, 792, 944, 1703
MboI	GATC	7 cut(s)	229, 262, 295, 532, 790, 942, 1701
MflI	RGATCY	2 cut(s)	229, 532
MhlI	GDGCHC	5 cut(s)	168, 708, 2056, 2155, 2468
MluCI	AATT	5 cut(s)	603, 743, 1043, 1135, 1432
Mly113I	GGCGCC	1 cut(s)	1591
MlyI	GAGTC	4 cut(s)	125, 329, 377, 2060
MmeI	TCCRAC	3 cut(s)	1618, 1657, 2368
Mph1103I	ATGCAT	1 cut(s)	1420
MroXI	GAANNNNTTC	3 cut(s)	180, 305, 2179
MseI	TTAA	4 cut(s)	930, 1254, 1317, 1628
MslI	CAYNNNNRTG	8 cut(s)	633, 648, 654, 660, 666, 672, 1413, 1423
MspA1I	CMGCKG	1 cut(s)	1850
MspCI	CTTAAG	1 cut(s)	1316
MspI	CCGG	2 cut(s)	143, 1775
MspR9I	CCNGG	5 cut(s)	92, 270, 506, 1250, 1726
Mva1269I	GAATGC	2 cut(s)	878, 1420
MvaI	CCWGG	5 cut(s)	92, 270, 506, 1250, 1726
NarI	GGCGCC	1 cut(s)	1591
NcoI	CCATGG	1 cut(s)	1157
NdeII	GATC	7 cut(s)	229, 262, 295, 532, 790, 942, 1701
NlaIV	GGNNCC	5 cut(s)	141, 534, 1550, 1592, 2012
NmuCI	GTSAC	2 cut(s)	133, 635
NsiI	ATGCAT	1 cut(s)	1420
NspI	RCATGY	5 cut(s)	671, 677, 1363, 1428, 1529
NspV	TTCGAA	1 cut(s)	747
PaeI	GCATGC	1 cut(s)	671
PasI	CCCWGGG	1 cut(s)	269
PceI	AGGCCT	3 cut(s)	1212, 1672, 1729
PciI	ACATGT	2 cut(s)	1424, 1525
PctI	GAATGC	2 cut(s)	878, 1420
PdmI	GAANNNNTTC	3 cut(s)	180, 305, 2179
PfeI	GAWTC	6 cut(s)	181, 339, 544, 1114, 1234, 2261
PkrI	GCNGC	5 cut(s)	211, 1849, 1852, 2246, 2282
PleI	GAGTC	4 cut(s)	124, 328, 377, 2060
PluTI	GGCGCC	1 cut(s)	1594
PmaCI	CACGTG	1 cut(s)	1916
PmlI	CACGTG	1 cut(s)	1916
PpsI	GAGTC	4 cut(s)	124, 328, 377, 2060
Ppu21I	YACGTR	2 cut(s)	1607, 1916
PscI	ACATGT	2 cut(s)	1424, 1525
PshAI	GACNNNNGTC	1 cut(s)	1888
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	5 cut(s)	90, 268, 504, 1248, 1724
PspCI	CACGTG	1 cut(s)	1916
PspFI	CCCAGC	1 cut(s)	96
PspGI	CCWGG	5 cut(s)	90, 268, 504, 1248, 1724
PspN4I	GGNNCC	5 cut(s)	141, 534, 1550, 1592, 2012
PspPI	GGNCC	4 cut(s)	82, 94, 1548, 1919
PstNI	CAGNNNCTG	1 cut(s)	1853
PsuI	RGATCY	2 cut(s)	229, 532
RsaI	GTAC	7 cut(s)	43, 594, 1912, 1948, 1957, 2342, 2414
RsaNI	GTAC	7 cut(s)	42, 593, 1911, 1947, 1956, 2341, 2413
RseI	CAYNNNNRTG	8 cut(s)	633, 648, 654, 660, 666, 672, 1413, 1423
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	4 cut(s)	930, 1254, 1317, 1628
SatI	GCNGC	5 cut(s)	210, 1848, 1851, 2245, 2281
Sau3AI	GATC	7 cut(s)	229, 262, 295, 532, 790, 942, 1701
Sau96I	GGNCC	4 cut(s)	82, 94, 1548, 1919
SchI	GAGTC	4 cut(s)	125, 329, 377, 2060
ScrFI	CCNGG	5 cut(s)	92, 270, 506, 1250, 1726
SduI	GDGCHC	5 cut(s)	168, 708, 2056, 2155, 2468
SfaNI	GCATC	9 cut(s)	274, 490, 766, 1018, 1143, 1152, 1446, 2119, 2145
SfcI	CTRYAG	3 cut(s)	387, 1906, 2203
SfoI	GGCGCC	1 cut(s)	1592
SfuI	TTCGAA	1 cut(s)	747
SinI	GGWCC	2 cut(s)	1548, 1919
SmiMI	CAYNNNNRTG	8 cut(s)	633, 648, 654, 660, 666, 672, 1413, 1423
SmlI	CTYRAG	3 cut(s)	167, 317, 1316
SmoI	CTYRAG	3 cut(s)	167, 317, 1316
SphI	GCATGC	1 cut(s)	671
Sse9I	AATT	5 cut(s)	603, 743, 1043, 1135, 1432
SseBI	AGGCCT	3 cut(s)	1212, 1672, 1729
SsiI	CCGC	5 cut(s)	38, 212, 730, 1850, 2140
SspDI	GGCGCC	1 cut(s)	1590
SspMI	CTAG	6 cut(s)	416, 548, 1719, 1746, 2031, 2226
SstI	GAGCTC	1 cut(s)	168
StuI	AGGCCT	3 cut(s)	1212, 1672, 1729
StyD4I	CCNGG	5 cut(s)	90, 268, 504, 1248, 1724
StyI	CCWWGG	3 cut(s)	78, 1157, 1835
TaaI	ACNGT	7 cut(s)	16, 139, 898, 1084, 1988, 2042, 2357
TaiI	ACGT	3 cut(s)	1609, 1918, 1932
TaqI	TCGA	3 cut(s)	282, 747, 2119
TaqII	GACCGA	1 cut(s)	1536
TasI	AATT	5 cut(s)	603, 743, 1043, 1135, 1432
TatI	WGTACW	5 cut(s)	592, 1910, 1946, 2340, 2412
TauI	GCSGC	1 cut(s)	1853
TfiI	GAWTC	6 cut(s)	181, 339, 544, 1114, 1234, 2261
Tru1I	TTAA	4 cut(s)	930, 1254, 1317, 1628
Tru9I	TTAA	4 cut(s)	930, 1254, 1317, 1628
TscAI	CASTG	3 cut(s)	337, 945, 1666
TseFI	GTSAC	2 cut(s)	133, 635
TseI	GCWGC	4 cut(s)	209, 1847, 2244, 2280
Tsp45I	GTSAC	2 cut(s)	133, 635
TspRI	CASTG	3 cut(s)	337, 945, 1666
Vha464I	CTTAAG	1 cut(s)	1316
VpaK11BI	GGWCC	2 cut(s)	1548, 1919
XapI	RAATTY	2 cut(s)	743, 1135
XceI	RCATGY	5 cut(s)	671, 677, 1363, 1428, 1529
XmiI	GTMKAC	2 cut(s)	1612, 1813
XmnI	GAANNNNTTC	3 cut(s)	180, 305, 2179
XspI	CTAG	6 cut(s)	416, 548, 1719, 1746, 2031, 2226
Zsp2I	ATGCAT	1 cut(s)	1420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.