MD02G1229600.v1.1
MYB Family

response regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0017706
Physical Location & Seq
Forward (+)
27354515 .. 27358617
4103 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1229600.v1.1.491

Sequence Viewer

Length: 1476 bp
ATGCGAAGGCCTAAGAGAGGTTCGTCAAGTATGTGTCGAGATAAGAATTTGAAGGGCCCCCAATCTGATATCATGCCCACAAGTAACATTCCCATCAGACTTCGTATTCTCGTTCTGGACGTTGATGCTGATTTTCTTACCTTTATTTCAGGCTTGCTTAAACTTTTGAAACATGAAGTGGCTTCAGCTGATAACAGCGAGAGTACCATACTAGCGGCTCTAGAGAATGGTGCGGTACATTATACAGTGAAACCAGTTTGCTTTAGTGATGTGAAAAACCTATGGGGATTGGTTTTGGGAGCCAATGAAACAACAAGATTGGATTCAAACAATAATATTACTAACCGTAGAGCAAGTGTTGATGGGAAATCGTCATCATCCACAGATGGGAGTAACAATTCTAAGAGAAAAAGATCATCAGAGGAAGGGAAAAGTACTTATATTTCTACAAAAAAGCACAAGGTCGAGTGGACTTCTGAACTTCAGGATCGCTTCTTGGAGGCTATTAATTATATAGGCCTAGACAAGGCTGTTCCAAAAAGAATCCTTGAGGTCATGAATGTTGAAGGGTTAACCAGAGAAAACGTTGCAAGTCATTTGCAGAAATATCGAATGTTCTTAAGGAAAGTTGCAGCAAAAATTTCAGTCAGCAAATTGTCTGTGGAAAGAGCCCAACAAACAAGACGTGCACTATTGTATCAAAACATTCTAGTAGAAAGACAAGCATCCACACTGCAGCAACGAAGATCATTCCATGAAAATTTCGAGCTCTTAGTTAATCAGAATACTGCATGGCTTCTCAACCGGCTGCCACGTGGTGCTAATGATCATGAAGCTTCTAGCAGCAGATGCCTACCTCGATCAGGATCATACAACACCAGACAAAATCCATACGTACTGAATGCTCAAACTCACTCTGGAAAGCAGCCTTTGATGATGAACACACCAAATCGTTTCCAACCAGCCAATTACTGTGGAATATTTCAATCAAACAGTGCTCAAAGAAACTGGTCCATTACTAACACATCGACAGATGTTGCGTATAACTTTGGGAGCAATAATGCAAATGGAGTTAAAATTGGTACCAATATTCCAAGTCAGATTCTGTTTAGTTCAAGCTGGGATACTTCAAATGGTGTCAAAAATTATGCCTCTGGTGCTAGCAGCAGTCAGTTGTCACCAATGTTTGCTGAAGGCAATAATATTGGACAAGAAAATGTTAATGCTTCAGCACTGGAAGATCCTCTACAGCAGCAGCAGCAGCAATATGGTGGTACTGATCTTGTGAATGCTTCCAATAACAGCAGTAGCCATGTGACAGGAGTAGTGGACTGTTCTAGCTCTACTGAGATACATTTGAAAGACAGCACTACTGGTCATGATGACTTTGATATTAGTGATATCTTTTGGAATGAACTTCAACTGGAATCTGTTACTGATGATAAGGTATGCTCGTATAAATATTTGTCATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Myb_DNA-binding Response_reg

Protein Analysis

492

Amino Acids

54.65

Weight (kDa)

8.95

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 154 - 204 2.9e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017706)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g07970
malus_domestica MD02G1229600.v1.1
rosa_chinensis RchiOBHm_Chr1g0341321
rosa_multiflora Rmu_sc0000047.1_g000016 Rmu_sc0037241.1_g000002
rosa_roxburghii Rroxscaffold_4G00311970
rosa_rugosa Rorug01G0157400.1
rosa_samantha Rh1AG172200 Rh1BG140000 Rh1CG160300 Rh1DG172400
rosa_wichuraiana Rw1G014360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1082
AccB1I GGYRCC 1 cut(s) 1082
AciI CCGC 2 cut(s) 215, 233
AclI AACGTT 1 cut(s) 585
AclWI GGATC 3 cut(s) 495, 874, 1235
AcsI RAATTY 3 cut(s) 46, 639, 760
AcuI CTGAAG 4 cut(s) 168, 467, 1212, 1212
AcvI CACGTG 1 cut(s) 815
AdeI CACNNNGTG 1 cut(s) 818
AfaI GTAC 6 cut(s) 205, 237, 436, 897, 1084, 1276
AfiI CCNNNNNNNGG 4 cut(s) 17, 387, 526, 863
AflII CTTAAG 1 cut(s) 619
AgsI TTSAA 9 cut(s) 52, 169, 327, 566, 986, 1116, 1131, 1360, 1421
AjiI CACGTC 1 cut(s) 686
AluBI AGCT 5 cut(s) 188, 769, 836, 1119, 1341
AluI AGCT 5 cut(s) 188, 769, 836, 1119, 1341
Alw21I GWGCWC 3 cut(s) 691, 771, 1000
Alw44I GTGCAC 1 cut(s) 687
AlwI GGATC 3 cut(s) 495, 874, 1235
AlwNI CAGNNNCTG 1 cut(s) 1105
AoxI GGCC 3 cut(s) 8, 55, 517
ApaI GGGCCC 1 cut(s) 59
ApaLI GTGCAC 1 cut(s) 687
ApoI RAATTY 3 cut(s) 46, 639, 760
AseI ATTAAT 1 cut(s) 507
Asp718I GGTACC 1 cut(s) 1082
AspS9I GGNCC 3 cut(s) 55, 56, 1011
AsuHPI GGTGA 1 cut(s) 1170
AsuNHI GCTAGC 1 cut(s) 1160
AvaII GGWCC 1 cut(s) 1011
BaeGI GKGCMC 2 cut(s) 59, 691
BaeI ACNNNNGTAYC 2 cut(s) 680, 713
BanI GGYRCC 1 cut(s) 1082
BanII GRGCYC 3 cut(s) 59, 673, 771
BarI GAAGNNNNNNTAC 2 cut(s) 1230, 1262
BbrPI CACGTG 1 cut(s) 815
Bbv12I GWGCWC 3 cut(s) 691, 771, 1000
BccI CCATC 3 cut(s) 101, 356, 380
BcgI CGANNNNNNTGC 2 cut(s) 590, 624
BciVI GTATCC 1 cut(s) 1117
BclI TGATCA 1 cut(s) 826
BfaI CTAG 7 cut(s) 212, 221, 521, 710, 840, 1161, 1338
BfmI CTRYAG 2 cut(s) 734, 1247
BfrI CTTAAG 1 cut(s) 619
BfuI GTATCC 1 cut(s) 1117
BmcAI AGTACT 1 cut(s) 436
Bme18I GGWCC 1 cut(s) 1011
BmgBI CACGTC 1 cut(s) 686
BmgT120I GGNCC 3 cut(s) 55, 56, 1011
BmiI GGNNCC 4 cut(s) 57, 58, 301, 1084
BmsI GCATC 3 cut(s) 115, 734, 839
BmtI GCTAGC 1 cut(s) 1164
BpuEI CTTGAG 1 cut(s) 569
BsaAI YACGTR 2 cut(s) 815, 895
BsaBI GATNNNNATC 1 cut(s) 865
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 387, 526, 863
Bse118I RCCGGY 1 cut(s) 804
Bse1I ACTGG 5 cut(s) 254, 1013, 1239, 1378, 1428
Bse8I GATNNNNATC 1 cut(s) 865
BseGI GGATG 2 cut(s) 377, 725
BseJI GATNNNNATC 1 cut(s) 865
BseLI CCNNNNNNNGG 4 cut(s) 17, 387, 526, 863
BseMII CTCAG 1 cut(s) 1338
BseNI ACTGG 5 cut(s) 254, 1013, 1239, 1378, 1428
BseSI GKGCMC 2 cut(s) 59, 691
BseYI CCCAGC 1 cut(s) 1119
BshFI GGCC 3 cut(s) 10, 57, 519
BshNI GGYRCC 1 cut(s) 1082
BsiHKAI GWGCWC 3 cut(s) 691, 771, 1000
BsiSI CCGG 1 cut(s) 805
BslI CCNNNNNNNGG 4 cut(s) 17, 387, 526, 863
BsmI GAATGC 2 cut(s) 907, 1294
BsnI GGCC 3 cut(s) 10, 57, 519
Bsp120I GGGCCC 1 cut(s) 55
Bsp1286I GDGCHC 5 cut(s) 59, 673, 691, 771, 1000
Bsp143I GATC 8 cut(s) 413, 487, 746, 826, 860, 866, 1240, 1279
BspACI CCGC 2 cut(s) 215, 233
BspANI GGCC 3 cut(s) 10, 57, 519
BspCNI CTCAG 1 cut(s) 1339
BspHI TCATGA 3 cut(s) 555, 829, 1378
BspLI GGNNCC 4 cut(s) 57, 58, 301, 1084
BspMAI CTGCAG 1 cut(s) 738
BspOI GCTAGC 1 cut(s) 1164
BspPI GGATC 3 cut(s) 495, 874, 1235
BspT107I GGYRCC 1 cut(s) 1082
BspTI CTTAAG 1 cut(s) 619
BsrFI RCCGGY 1 cut(s) 804
BsrI ACTGG 5 cut(s) 254, 1013, 1239, 1378, 1428
BssAI RCCGGY 1 cut(s) 804
BssMI GATC 8 cut(s) 413, 487, 746, 826, 860, 866, 1240, 1279
Bst4CI ACNGT 5 cut(s) 247, 347, 974, 995, 1334
BstAFI CTTAAG 1 cut(s) 619
BstAPI GCANNNNNTGC 1 cut(s) 849
BstBAI YACGTR 2 cut(s) 815, 895
BstC8I GCNNGC 2 cut(s) 155, 1162
BstDEI CTNAG 4 cut(s) 12, 402, 772, 1347
BstENI CCTNNNNNAGG 3 cut(s) 15, 524, 861
BstF5I GGATG 2 cut(s) 377, 725
BstKTI GATC 8 cut(s) 416, 490, 749, 829, 863, 869, 1243, 1282
BstMBI GATC 8 cut(s) 413, 487, 746, 826, 860, 866, 1240, 1279
BstMWI GCNNNNNNNGC 4 cut(s) 849, 1157, 1258, 1261
BstSFI CTRYAG 2 cut(s) 734, 1247
BstSLI GKGCMC 2 cut(s) 59, 691
BstSNI TACGTA 1 cut(s) 895
BstX2I RGATCY 1 cut(s) 1240
BstYI RGATCY 1 cut(s) 1240
BsuI GTATCC 1 cut(s) 1117
BsuRI GGCC 3 cut(s) 10, 57, 519
BtrI CACGTC 1 cut(s) 686
BtsCI GGATG 2 cut(s) 377, 725
BtsI GCAGTG 1 cut(s) 731
BtsIMutI CAGTG 4 cut(s) 252, 731, 1000, 1232
Cac8I GCNNGC 2 cut(s) 155, 1162
CaiI CAGNNNCTG 1 cut(s) 1105
CciI TCATGA 3 cut(s) 555, 829, 1378
Cfr10I RCCGGY 1 cut(s) 804
Cfr13I GGNCC 3 cut(s) 55, 56, 1011
Csp6I GTAC 6 cut(s) 204, 236, 435, 896, 1083, 1275
CspCI CAANNNNNGTGG 2 cut(s) 955, 990
CviAII CATG 9 cut(s) 73, 173, 556, 755, 792, 830, 1313, 1379, 1470
CviQI GTAC 6 cut(s) 204, 236, 435, 896, 1083, 1275
DdeI CTNAG 4 cut(s) 12, 402, 772, 1347
DpnI GATC 8 cut(s) 415, 489, 748, 828, 862, 868, 1242, 1281
DpnII GATC 8 cut(s) 413, 487, 746, 826, 860, 866, 1240, 1279
DraIII CACNNNGTG 1 cut(s) 818
Ecl136II GAGCTC 1 cut(s) 769
Eco105I TACGTA 1 cut(s) 895
Eco147I AGGCCT 2 cut(s) 10, 519
Eco24I GRGCYC 3 cut(s) 59, 673, 771
Eco32I GATATC 2 cut(s) 70, 1402
Eco47I GGWCC 1 cut(s) 1011
Eco53kI GAGCTC 1 cut(s) 769
Eco57I CTGAAG 4 cut(s) 168, 467, 1212, 1212
Eco72I CACGTG 1 cut(s) 815
EcoICRI GAGCTC 1 cut(s) 769
EcoNI CCTNNNNNAGG 3 cut(s) 15, 524, 861
EcoO109I RGGNCCY 2 cut(s) 55, 56
EcoRV GATATC 2 cut(s) 70, 1402
EcoT38I GRGCYC 3 cut(s) 59, 673, 771
FaeI CATG 9 cut(s) 76, 176, 559, 758, 795, 833, 1316, 1382, 1473
FatI CATG 9 cut(s) 72, 172, 555, 754, 791, 829, 1312, 1378, 1469
FbaI TGATCA 1 cut(s) 826
FokI GGATG 2 cut(s) 364, 712
FriOI GRGCYC 3 cut(s) 59, 673, 771
FspBI CTAG 7 cut(s) 212, 221, 521, 710, 840, 1161, 1338
GsaI CCCAGC 1 cut(s) 1123
HaeIII GGCC 3 cut(s) 10, 57, 519
HapII CCGG 1 cut(s) 805
Hin1II CATG 9 cut(s) 76, 176, 559, 758, 795, 833, 1316, 1382, 1473
HincII GTYRAC 1 cut(s) 573
HindII GTYRAC 1 cut(s) 573
HindIII AAGCTT 1 cut(s) 834
HinfI GANTC 4 cut(s) 323, 543, 1102, 1427
HpaI GTTAAC 1 cut(s) 573
HpaII CCGG 1 cut(s) 805
HphI GGTGA 1 cut(s) 1170
Hpy166II GTNNAC 4 cut(s) 471, 573, 689, 1330
Hpy188I TCNGA 6 cut(s) 67, 98, 421, 478, 783, 1101
Hpy188III TCNNGA 9 cut(s) 38, 116, 221, 485, 556, 830, 864, 918, 1379
Hpy8I GTNNAC 4 cut(s) 471, 573, 689, 1330
HpyAV CCTTC 4 cut(s) 46, 419, 560, 1187
HpyCH4III ACNGT 5 cut(s) 247, 347, 974, 995, 1334
HpyCH4IV ACGT 5 cut(s) 120, 585, 685, 814, 894
HpyCH4V TGCA 7 cut(s) 590, 601, 632, 689, 736, 791, 1064
HpyF10VI GCNNNNNNNGC 4 cut(s) 849, 1157, 1258, 1261
HpyF3I CTNAG 4 cut(s) 12, 402, 772, 1347
HpySE526I ACGT 5 cut(s) 120, 585, 685, 814, 894
Hsp92II CATG 9 cut(s) 76, 176, 559, 758, 795, 833, 1316, 1382, 1473
KpnI GGTACC 1 cut(s) 1086
Ksp22I TGATCA 1 cut(s) 826
KspAI GTTAAC 1 cut(s) 573
Kzo9I GATC 8 cut(s) 413, 487, 746, 826, 860, 866, 1240, 1279
LmnI GCTCC 2 cut(s) 299, 1053
LweI GCATC 3 cut(s) 115, 734, 839
MaeI CTAG 7 cut(s) 212, 221, 521, 710, 840, 1161, 1338
MaeII ACGT 5 cut(s) 120, 585, 685, 814, 894
MaeIII GTNAC 5 cut(s) 83, 392, 1176, 1315, 1432
MalI GATC 8 cut(s) 415, 489, 748, 828, 862, 868, 1242, 1281
MboI GATC 8 cut(s) 413, 487, 746, 826, 860, 866, 1240, 1279
MboII GAAGA 2 cut(s) 756, 1250
MflI RGATCY 1 cut(s) 1240
MhlI GDGCHC 5 cut(s) 59, 673, 691, 771, 1000
MluCI AATT 9 cut(s) 46, 397, 508, 639, 653, 760, 967, 1077, 1144
MmeI TCCRAC 1 cut(s) 982
MnlI CCTC 7 cut(s) 11, 415, 493, 544, 867, 1162, 1254
MseI TTAA 7 cut(s) 159, 507, 572, 620, 777, 1074, 1221
MspA1I CMGCKG 1 cut(s) 188
MspCI CTTAAG 1 cut(s) 619
MspI CCGG 1 cut(s) 805
Mva1269I GAATGC 2 cut(s) 907, 1294
MwoI GCNNNNNNNGC 4 cut(s) 849, 1157, 1258, 1261
NdeII GATC 8 cut(s) 413, 487, 746, 826, 860, 866, 1240, 1279
NheI GCTAGC 1 cut(s) 1160
NlaIII CATG 9 cut(s) 76, 176, 559, 758, 795, 833, 1316, 1382, 1473
NlaIV GGNNCC 4 cut(s) 57, 58, 301, 1084
NmuCI GTSAC 2 cut(s) 1176, 1315
PagI TCATGA 3 cut(s) 555, 829, 1378
PceI AGGCCT 2 cut(s) 10, 519
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PctI GAATGC 2 cut(s) 907, 1294
PfeI GAWTC 4 cut(s) 323, 543, 1102, 1427
PmaCI CACGTG 1 cut(s) 815
PmlI CACGTG 1 cut(s) 815
Ppu21I YACGTR 2 cut(s) 815, 895
PshBI ATTAAT 1 cut(s) 507
Psp124BI GAGCTC 1 cut(s) 771
Psp1406I AACGTT 1 cut(s) 585
PspCI CACGTG 1 cut(s) 815
PspFI CCCAGC 1 cut(s) 1119
PspN4I GGNNCC 4 cut(s) 57, 58, 301, 1084
PspOMI GGGCCC 1 cut(s) 55
PspPI GGNCC 3 cut(s) 55, 56, 1011
PstI CTGCAG 1 cut(s) 738
PstNI CAGNNNCTG 1 cut(s) 1105
PsuI RGATCY 1 cut(s) 1240
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 6 cut(s) 205, 237, 436, 897, 1084, 1276
RsaNI GTAC 6 cut(s) 204, 236, 435, 896, 1083, 1275
SacI GAGCTC 1 cut(s) 771
SaqAI TTAA 7 cut(s) 159, 507, 572, 620, 777, 1074, 1221
Sau3AI GATC 8 cut(s) 413, 487, 746, 826, 860, 866, 1240, 1279
Sau96I GGNCC 3 cut(s) 55, 56, 1011
ScaI AGTACT 1 cut(s) 436
SduI GDGCHC 5 cut(s) 59, 673, 691, 771, 1000
SfaNI GCATC 3 cut(s) 115, 734, 839
SfcI CTRYAG 2 cut(s) 734, 1247
SinI GGWCC 1 cut(s) 1011
SmlI CTYRAG 2 cut(s) 548, 619
SmoI CTYRAG 2 cut(s) 548, 619
SnaBI TACGTA 1 cut(s) 895
Sse9I AATT 9 cut(s) 46, 397, 508, 639, 653, 760, 967, 1077, 1144
SseBI AGGCCT 2 cut(s) 10, 519
SsiI CCGC 2 cut(s) 215, 233
SspI AATATT 5 cut(s) 337, 981, 1090, 1204, 1463
SspMI CTAG 7 cut(s) 212, 221, 521, 710, 840, 1161, 1338
SstI GAGCTC 1 cut(s) 771
StuI AGGCCT 2 cut(s) 10, 519
TaaI ACNGT 5 cut(s) 247, 347, 974, 995, 1334
TaiI ACGT 5 cut(s) 123, 588, 688, 817, 897
TaqI TCGA 6 cut(s) 37, 465, 610, 765, 859, 1028
TasI AATT 9 cut(s) 46, 397, 508, 639, 653, 760, 967, 1077, 1144
TatI WGTACW 1 cut(s) 434
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 4 cut(s) 323, 543, 1102, 1427
Tru1I TTAA 7 cut(s) 159, 507, 572, 620, 777, 1074, 1221
Tru9I TTAA 7 cut(s) 159, 507, 572, 620, 777, 1074, 1221
TscAI CASTG 4 cut(s) 252, 738, 1000, 1239
TseFI GTSAC 2 cut(s) 1176, 1315
Tsp45I GTSAC 2 cut(s) 1176, 1315
TspDTI ATGAA 7 cut(s) 189, 321, 572, 771, 846, 953, 1428
TspRI CASTG 4 cut(s) 252, 738, 1000, 1239
Vha464I CTTAAG 1 cut(s) 619
VneI GTGCAC 1 cut(s) 687
VpaK11BI GGWCC 1 cut(s) 1011
VspI ATTAAT 1 cut(s) 507
XagI CCTNNNNNAGG 3 cut(s) 15, 524, 861
XapI RAATTY 3 cut(s) 46, 639, 760
XbaI TCTAGA 1 cut(s) 220
XspI CTAG 7 cut(s) 212, 221, 521, 710, 840, 1161, 1338
ZrmI AGTACT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.