RchiOBHm_Chr1g0341321
MYB Family

response regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017706
Physical Location & Seq
Reverse (-)
33020237 .. 33022118
1882 bp
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UTR
Exon/CDS
Intron
PRQ56802

Sequence Viewer

Length: 1503 bp
ATGTTTGAACATGCAGTGGTTTCGGCCGACGATAGAGAGCATGTCATATTAAAGGCTCTCAAGCTTGGTGCTGCACAGTATATAGTCAAACCAGTTTGCTTTGATGATGTGAAAAACCTATGGAAATTTGTTGTCAATGCCGATAGATCACATAAAGAAATTTCTTTTGTTGAGGAAATCGAAAGTGGTGGCGAACAATCAAGTGAGACAAGTACATCTGACGAGGATACAAATGGTGATCATGAGAAAAAGAATTCCAAGAGAAGAAAATCAACAAAGGAAGGCAATGCTCCAAAAAAGGCAAAGTTGATATGGACGCAAGAGCTCCAGGCTCGGTTTCTGGAATCTGTTCATTTTATAGGCCTGGAAAGGGCTGTTCCGAAAACAATTCTTGAGGTCATGAACGTTGAAGGCCTGACTAGAGAAAACGTGGCGAGCCATTTGCAGAAGTATAGACAATTTTTAAGGAGAGTTGCAGTAAAGATTTCAGTAAGTAAATCGAATATTGGTAACAAGTCCCAGACGTCAAGCTCTACATTCGGGCAAAGCCAAACTTCGATATTCCAGCAGCAGCCCATTTCTGGACAGAATCTCTCCATAAATCTTATTGCTTCAAGCCTCGGACGTCCCCTTTTTCATGCCAATCACCACGAAGCATCAACCACTTCCGTGCCTCCATTCGGAAACACATCACACTTATATCAACCGAATTCTCTATCACATTTCCAGATGCCGCAACCTGCTTTCATGGGGTACCCAGGGTCTTTCCAACCAGCCAATTACTCATCAGTTAATGGGAGTGGATTTCAGACAAACAATGTTCAAAGCAATTGGTCAAGTGCTAATGGACTCCAAGCTCAAACAAGTCCACTGACCAACCACCTATATGGCAATTACAATAACGATGGCATGAGTACAGGGTTTCAGTTTGGTTCATGGAATGGAACTATGGGATTTCTGAATGATTCTAATAGTCTCATCACCAACAACTACTATGGTGGACTCCCAATGAGTGGTGCTGCTTCTGTAGGGCTAGCTGGATTTAACTCGAATCAAAACCCTAATTTGATGGTGGTGAAATACGGCTGGGCTTCATCAACTAGTGGACTCGATACTAATTTTTTTGGATCGGTTCTGAATGATATTGATCAAAGTGAGCTTCATCAAGAAATGAACAATACTTCACCAACGGGTAATTTGATGTTCGGTAACAATAAATTTTCAGGCGTGGAGGATGCTTCATCAGTTGGTTTTGGTGGTATTACAACTGTGGAAGCTGCGGCTTCTAGCTCTAATGTTGTAGACGTATCACCAAATCAGAATCAAACCGGCGAGTACTTTGATGAACTTCATGATATCTTATTCAACGATACCAATTTGCAATCTGTCAACCAGGAAGAAGGAAAAGAAGTGGTCAATTTGTATGAGACTAATGCAAATGCGGTTCAAGAAAATGCTTCCTTGCTCAAAGAATCCAACGGCCAGGCATGTATCTGTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Myb_DNA-binding Response_reg

Protein Analysis

500

Amino Acids

54.57

Weight (kDa)

5.52

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017706)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g07970
malus_domestica MD02G1229600.v1.1
rosa_chinensis RchiOBHm_Chr1g0341321
rosa_multiflora Rmu_sc0000047.1_g000016 Rmu_sc0037241.1_g000002
rosa_roxburghii Rroxscaffold_4G00311970
rosa_rugosa Rorug01G0157400.1
rosa_samantha Rh1AG172200 Rh1BG140000 Rh1CG160300 Rh1DG172400
rosa_wichuraiana Rw1G014360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 527, 628
Acc36I ACCTGC 1 cut(s) 748
Acc65I GGTACC 1 cut(s) 753
AccB1I GGYRCC 1 cut(s) 753
AccB7I CCANNNNNTGG 1 cut(s) 1013
AccI GTMKAC 1 cut(s) 1302
AciI CCGC 3 cut(s) 734, 1280, 1442
AclI AACGTT 1 cut(s) 405
AclWI GGATC 1 cut(s) 1135
AcoI YGGCCR 2 cut(s) 24, 1480
AcsI RAATTY 5 cut(s) 125, 159, 253, 709, 1217
AcyI GRCGYC 2 cut(s) 524, 625
AfaI GTAC 4 cut(s) 214, 755, 916, 1337
AfiI CCNNNNNNNGG 4 cut(s) 370, 581, 680, 1013
AgsI TTSAA 6 cut(s) 8, 410, 615, 824, 1366, 1448
AhlI ACTAGT 1 cut(s) 1100
AjnI CCWGG 5 cut(s) 327, 363, 757, 1392, 1482
AleI CACNNNNGTG 1 cut(s) 668
AluBI AGCT 8 cut(s) 64, 325, 531, 857, 1037, 1159, 1277, 1290
AluI AGCT 8 cut(s) 64, 325, 531, 857, 1037, 1159, 1277, 1290
Alw21I GWGCWC 1 cut(s) 327
Alw26I GTCTC 3 cut(s) 200, 980, 1421
AlwI GGATC 1 cut(s) 1135
AoxI GGCC 4 cut(s) 24, 361, 412, 1480
ApeKI GCWGC 5 cut(s) 71, 568, 571, 1019, 1277
ApoI RAATTY 5 cut(s) 125, 159, 253, 709, 1217
Asp700I GAANNNNTTC 1 cut(s) 348
Asp718I GGTACC 1 cut(s) 753
AsuHPI GGTGA 6 cut(s) 248, 638, 973, 1087, 1176, 1302
AsuNHI GCTAGC 1 cut(s) 1033
BanI GGYRCC 1 cut(s) 753
BanII GRGCYC 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 327
BbvI GCAGC 5 cut(s) 58, 580, 583, 1006, 1264
BccI CCATC 2 cut(s) 899, 1063
BceAI ACGGC 2 cut(s) 1099, 1495
BcgI CGANNNNNNTGC 3 cut(s) 37, 424, 458
BciT130I CCWGG 5 cut(s) 329, 365, 759, 1394, 1484
BciVI GTATCC 1 cut(s) 220
BclI TGATCA 2 cut(s) 238, 1147
BcoDI GTCTC 3 cut(s) 200, 980, 1421
BcuI ACTAGT 1 cut(s) 1100
BfaI CTAG 4 cut(s) 420, 1034, 1101, 1287
BfmI CTRYAG 1 cut(s) 1026
BfuAI ACCTGC 1 cut(s) 748
BfuI GTATCC 1 cut(s) 220
BisI GCNGC 7 cut(s) 72, 569, 572, 734, 1020, 1278, 1281
BlsI GCNGC 7 cut(s) 73, 570, 573, 735, 1021, 1279, 1282
BmcAI AGTACT 1 cut(s) 1337
Bme1390I CCNGG 5 cut(s) 329, 365, 759, 1394, 1484
BmiI GGNNCC 1 cut(s) 755
BmrFI CCNGG 5 cut(s) 329, 365, 759, 1394, 1484
BmsI GCATC 3 cut(s) 665, 720, 1225
BmtI GCTAGC 1 cut(s) 1037
BpmI CTGGAG 1 cut(s) 311
BpuEI CTTGAG 2 cut(s) 44, 413
BsaBI GATNNNNATC 1 cut(s) 1146
BsaHI GRCGYC 2 cut(s) 524, 625
BsaJI CCNNGG 3 cut(s) 619, 757, 758
Bsc4I CCNNNNNNNGG 4 cut(s) 370, 581, 680, 1013
Bse118I RCCGGY 1 cut(s) 1328
Bse1I ACTGG 1 cut(s) 92
Bse3DI GCAATG 1 cut(s) 292
Bse8I GATNNNNATC 1 cut(s) 1146
BseBI CCWGG 5 cut(s) 329, 365, 759, 1394, 1484
BseDI CCNNGG 3 cut(s) 619, 757, 758
BseGI GGATG 1 cut(s) 1240
BseJI GATNNNNATC 1 cut(s) 1146
BseLI CCNNNNNNNGG 4 cut(s) 370, 581, 680, 1013
BseMI GCAATG 1 cut(s) 292
BseNI ACTGG 1 cut(s) 92
BseX3I CGGCCG 1 cut(s) 24
BseXI GCAGC 5 cut(s) 58, 580, 583, 1006, 1264
BseYI CCCAGC 1 cut(s) 1086
BsgI GTGCAG 1 cut(s) 57
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 4 cut(s) 26, 363, 414, 1482
BshNI GGYRCC 1 cut(s) 753
BsiEI CGRYCG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 327
BsiSI CCGG 1 cut(s) 1329
BslFI GGGAC 2 cut(s) 502, 612
BslI CCNNNNNNNGG 4 cut(s) 370, 581, 680, 1013
BsmAI GTCTC 3 cut(s) 200, 980, 1421
BsmFI GGGAC 2 cut(s) 502, 612
BsnI GGCC 4 cut(s) 26, 363, 414, 1482
Bsp1286I GDGCHC 1 cut(s) 327
Bsp143I GATC 4 cut(s) 146, 238, 1127, 1147
BspACI CCGC 3 cut(s) 734, 1280, 1442
BspANI GGCC 4 cut(s) 26, 363, 414, 1482
BspHI TCATGA 3 cut(s) 241, 399, 1351
BspLI GGNNCC 1 cut(s) 755
BspMI ACCTGC 1 cut(s) 748
BspOI GCTAGC 1 cut(s) 1037
BspPI GGATC 1 cut(s) 1135
BspT107I GGYRCC 1 cut(s) 753
BsrDI GCAATG 1 cut(s) 292
BsrFI RCCGGY 1 cut(s) 1328
BsrI ACTGG 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 1328
BssECI CCNNGG 3 cut(s) 619, 757, 758
BssMI GATC 4 cut(s) 146, 238, 1127, 1147
BssNI GRCGYC 2 cut(s) 524, 625
Bst2UI CCWGG 5 cut(s) 329, 365, 759, 1394, 1484
Bst4CI ACNGT 2 cut(s) 78, 1270
BstACI GRCGYC 2 cut(s) 524, 625
BstC8I GCNNGC 2 cut(s) 436, 1035
BstF5I GGATG 1 cut(s) 1240
BstKTI GATC 4 cut(s) 149, 241, 1130, 1150
BstMAI GTCTC 3 cut(s) 200, 980, 1421
BstMBI GATC 4 cut(s) 146, 238, 1127, 1147
BstMCI CGRYCG 1 cut(s) 27
BstNI CCWGG 5 cut(s) 329, 365, 759, 1394, 1484
BstNSI RCATGY 3 cut(s) 14, 44, 1491
BstSCI CCNGG 5 cut(s) 327, 363, 757, 1392, 1482
BstSFI CTRYAG 1 cut(s) 1026
BstV1I GCAGC 5 cut(s) 58, 580, 583, 1006, 1264
BstXI CCANNNNNNTGG 1 cut(s) 887
BstZI CGGCCG 1 cut(s) 24
BsuI GTATCC 1 cut(s) 220
BsuRI GGCC 4 cut(s) 26, 363, 414, 1482
BtsCI GGATG 1 cut(s) 1240
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 3 cut(s) 21, 869, 1498
BveI ACCTGC 1 cut(s) 748
Cac8I GCNNGC 2 cut(s) 436, 1035
CciI TCATGA 3 cut(s) 241, 399, 1351
Cfr10I RCCGGY 1 cut(s) 1328
CseI GACGC 1 cut(s) 325
Csp6I GTAC 4 cut(s) 213, 754, 915, 1336
CviQI GTAC 4 cut(s) 213, 754, 915, 1336
DpnI GATC 4 cut(s) 148, 240, 1129, 1149
DpnII GATC 4 cut(s) 146, 238, 1127, 1147
EaeI YGGCCR 2 cut(s) 24, 1480
EagI CGGCCG 1 cut(s) 24
Ecl136II GAGCTC 1 cut(s) 325
EclXI CGGCCG 1 cut(s) 24
Eco147I AGGCCT 2 cut(s) 363, 414
Eco24I GRGCYC 1 cut(s) 327
Eco32I GATATC 1 cut(s) 1357
Eco52I CGGCCG 1 cut(s) 24
Eco53kI GAGCTC 1 cut(s) 325
EcoICRI GAGCTC 1 cut(s) 325
EcoRI GAATTC 2 cut(s) 253, 709
EcoRII CCWGG 5 cut(s) 327, 363, 757, 1392, 1482
EcoRV GATATC 1 cut(s) 1357
EcoT38I GRGCYC 1 cut(s) 327
FalI AAGNNNNNCTT 2 cut(s) 538, 570
FaqI GGGAC 2 cut(s) 502, 612
FbaI TGATCA 2 cut(s) 238, 1147
FblI GTMKAC 1 cut(s) 1302
Fnu4HI GCNGC 7 cut(s) 72, 569, 572, 734, 1020, 1278, 1281
FokI GGATG 1 cut(s) 1247
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 7 cut(s) 72, 569, 572, 734, 1020, 1278, 1281
FspBI CTAG 4 cut(s) 420, 1034, 1101, 1287
GluI GCNGC 7 cut(s) 72, 569, 572, 734, 1020, 1278, 1281
GsaI CCCAGC 1 cut(s) 1090
GsuI CTGGAG 1 cut(s) 311
HaeIII GGCC 4 cut(s) 26, 363, 414, 1482
HapII CCGG 1 cut(s) 1329
HgaI GACGC 1 cut(s) 325
Hin1I GRCGYC 2 cut(s) 524, 625
HincII GTYRAC 1 cut(s) 1390
HindII GTYRAC 1 cut(s) 1390
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 9 cut(s) 344, 589, 849, 965, 1002, 1051, 1107, 1321, 1472
HpaII CCGG 1 cut(s) 1329
HphI GGTGA 6 cut(s) 248, 638, 973, 1087, 1176, 1302
Hpy166II GTNNAC 5 cut(s) 869, 1001, 1106, 1303, 1390
Hpy188I TCNGA 8 cut(s) 220, 381, 623, 683, 810, 960, 1137, 1320
Hpy188III TCNNGA 9 cut(s) 242, 341, 392, 400, 582, 727, 1166, 1352, 1448
Hpy8I GTNNAC 5 cut(s) 869, 1001, 1106, 1303, 1390
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 3 cut(s) 275, 404, 1394
HpyCH4III ACNGT 2 cut(s) 78, 1270
HpyCH4IV ACGT 5 cut(s) 405, 429, 524, 625, 1305
HpyCH4V TGCA 6 cut(s) 14, 74, 445, 476, 1381, 1436
HpySE526I ACGT 5 cut(s) 405, 429, 524, 625, 1305
Hsp92I GRCGYC 2 cut(s) 524, 625
KpnI GGTACC 1 cut(s) 757
Ksp22I TGATCA 2 cut(s) 238, 1147
Kzo9I GATC 4 cut(s) 146, 238, 1127, 1147
LmnI GCTCC 2 cut(s) 295, 330
Lsp1109I GCAGC 5 cut(s) 58, 580, 583, 1006, 1264
LweI GCATC 3 cut(s) 665, 720, 1225
MaeI CTAG 4 cut(s) 420, 1034, 1101, 1287
MaeII ACGT 5 cut(s) 405, 429, 524, 625, 1305
MaeIII GTNAC 3 cut(s) 509, 1208, 1496
MalI GATC 4 cut(s) 148, 240, 1129, 1149
MboI GATC 4 cut(s) 146, 238, 1127, 1147
MboII GAAGA 2 cut(s) 276, 1409
MfeI CAATTG 1 cut(s) 829
MhlI GDGCHC 1 cut(s) 327
MlyI GAGTC 3 cut(s) 843, 996, 1101
MmeI TCCRAC 2 cut(s) 793, 1500
MnlI CCTC 6 cut(s) 166, 217, 388, 629, 684, 1225
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 4 cut(s) 50, 464, 792, 1044
MslI CAYNNNNRTG 2 cut(s) 668, 885
MspI CCGG 1 cut(s) 1329
MspR9I CCNGG 5 cut(s) 329, 365, 759, 1394, 1484
MunI CAATTG 1 cut(s) 829
MvaI CCWGG 5 cut(s) 329, 365, 759, 1394, 1484
NdeII GATC 4 cut(s) 146, 238, 1127, 1147
NheI GCTAGC 1 cut(s) 1033
NlaIV GGNNCC 1 cut(s) 755
NmuCI GTSAC 1 cut(s) 1496
NspI RCATGY 3 cut(s) 14, 44, 1491
OliI CACNNNNGTG 1 cut(s) 668
PagI TCATGA 3 cut(s) 241, 399, 1351
PasI CCCWGGG 1 cut(s) 758
PceI AGGCCT 2 cut(s) 363, 414
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 6 cut(s) 344, 589, 965, 1051, 1321, 1472
PflMI CCANNNNNTGG 1 cut(s) 1013
PkrI GCNGC 7 cut(s) 73, 570, 573, 735, 1021, 1279, 1282
PleI GAGTC 3 cut(s) 843, 996, 1101
PpsI GAGTC 3 cut(s) 843, 996, 1101
Psp124BI GAGCTC 1 cut(s) 327
Psp1406I AACGTT 1 cut(s) 405
Psp6I CCWGG 5 cut(s) 327, 363, 757, 1392, 1482
PspFI CCCAGC 1 cut(s) 1086
PspGI CCWGG 5 cut(s) 327, 363, 757, 1392, 1482
PspN4I GGNNCC 1 cut(s) 755
RsaI GTAC 4 cut(s) 214, 755, 916, 1337
RsaNI GTAC 4 cut(s) 213, 754, 915, 1336
RseI CAYNNNNRTG 2 cut(s) 668, 885
SacI GAGCTC 1 cut(s) 327
SaqAI TTAA 4 cut(s) 50, 464, 792, 1044
SatI GCNGC 7 cut(s) 72, 569, 572, 734, 1020, 1278, 1281
Sau3AI GATC 4 cut(s) 146, 238, 1127, 1147
ScaI AGTACT 1 cut(s) 1337
SchI GAGTC 3 cut(s) 843, 996, 1101
ScrFI CCNGG 5 cut(s) 329, 365, 759, 1394, 1484
SduI GDGCHC 1 cut(s) 327
SfaNI GCATC 3 cut(s) 665, 720, 1225
SfcI CTRYAG 1 cut(s) 1026
SmiMI CAYNNNNRTG 2 cut(s) 668, 885
SmlI CTYRAG 2 cut(s) 59, 392
SmoI CTYRAG 2 cut(s) 59, 392
SpeI ACTAGT 1 cut(s) 1100
SseBI AGGCCT 2 cut(s) 363, 414
SsiI CCGC 3 cut(s) 734, 1280, 1442
SspI AATATT 1 cut(s) 505
SspMI CTAG 4 cut(s) 420, 1034, 1101, 1287
SstI GAGCTC 1 cut(s) 327
StuI AGGCCT 2 cut(s) 363, 414
StyD4I CCNGG 5 cut(s) 327, 363, 757, 1392, 1482
TaaI ACNGT 2 cut(s) 78, 1270
TaiI ACGT 5 cut(s) 408, 432, 527, 628, 1308
TaqI TCGA 5 cut(s) 180, 500, 557, 1049, 1110
TatI WGTACW 3 cut(s) 212, 914, 1335
TauI GCSGC 2 cut(s) 736, 1283
TfiI GAWTC 6 cut(s) 344, 589, 965, 1051, 1321, 1472
Tru1I TTAA 4 cut(s) 50, 464, 792, 1044
Tru9I TTAA 4 cut(s) 50, 464, 792, 1044
TscAI CASTG 2 cut(s) 21, 876
TseFI GTSAC 1 cut(s) 1496
TseI GCWGC 5 cut(s) 71, 568, 571, 1019, 1277
Tsp45I GTSAC 1 cut(s) 1496
TspGWI ACGGA 1 cut(s) 658
TspRI CASTG 2 cut(s) 21, 876
Van91I CCANNNNNTGG 1 cut(s) 1013
XapI RAATTY 5 cut(s) 125, 159, 253, 709, 1217
XceI RCATGY 3 cut(s) 14, 44, 1491
XmiI GTMKAC 1 cut(s) 1302
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 4 cut(s) 420, 1034, 1101, 1287
ZraI GACGTC 2 cut(s) 525, 626
ZrmI AGTACT 1 cut(s) 1337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.