Rh1BG140000
MYB Family

response regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0017706
Physical Location & Seq
Forward (+)
23360196 .. 23365577
5382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG140000.1

Sequence Viewer

Length: 1656 bp
ATGGTTTCACAAGGACAATTTGATCCTGTCAAACTTCGTGTACTTGTTATAGGTTATGACCCTACATTTCTGGCCAGTGTTTCTGAATTTCTTCGCCTCTTGAACCATCAAGTTTGGACATATACGAACCCATTCATTGCTTTCTCTGCTCTTCGGGTTAGGAGAAACTTTTATGACCTCATTATGACAGACCTTTATCTACCTGATATGGATGGATTTGAAGTCCAGAAAAGGGTTCGAGAAGAATTTAAGCTGCCGTTAATTATGGTTTCGGCCGACGATAGAGAGCATGTCATATTAAAGGCTCTCAAGCTTGGTGCTGCACATTATATAGTCAAACCAGTTTGCTTTGATGATGTGAAAAACCTATGGAAATTTGTTGTCAATGCCGATAGATCACCGAAAGAAATTTCTTTTGTTGAGGAAATCGAAAGTGGTGGCGAACAATCAAGTGAGACAAGTACATCTGACGAGAATACAAATAGTGATCATGAGAAAAAGAATTCCAAGAGAAGAAAATCAAGAAAGGAAGGCAATGCTCCAAAAAAGGCAAAGTTGATATGGACGCAAGAGCTCCAGGCTCGGTTTCTGGAATCTAAGTATAGACAATTTTTAAGGAGAGTTGCAGTAAAGATTTCAGTAAGTAAATCGGATATTGGTAACAAGTCCCAGACGTCAAGCTCTACATTCGGGCAAAGTCAAACTTCGATATTCCAGCAGCAGCCCATTTGTGGACAGAATCTCTCCATATTAAATCTTAATGCTTCAAGCCTTGGACGTCCCCTTTTACATGCCAATCACCACGAAGCATCAACCACTTCCGTGCCTCCATTCGGAAACACATCACACTTATATCAACCGAATTCTCTATCACATTTTCAGATGCCACAACCTGCTTTCATGGGGTACCCAGGGTCTTTCCAACCAGCCAATTACTCATCAGTTAATGGGAGTGGATTTCAGACAAATAATGTTCAAAGCAATTGGTCAAGTGCTAATGGACTCCAAGCTCAAACAAGTCCACTGACCAACCACCTATATGGCAATTACAATAACTATGGCATGAGTACAGGGTTTCAGTTTGGTTCATGGAATGGAACTATGGGATTTCTGAATGATTCTAATAGTCTCATCACCAACAACTACCATGGTGGAATCCCAATGAGTGGTGCGGCTTCTGTAGGGCTAGCTGGATTTAACTCGAATCAAAACCCTAATTTGATGGTGGCGAACCATGGCTGGGCTTCATCAACTAGTGGACTCGATACTAATTTTTTTGGATCGTTTCTGAATGATATTGATCAAAGTGAGCTTCATCAAGAAATGAACAATACTTCACCAACGGGTAATTTGATGTTCGGTAACAATAATTTTTCAGGCGTGGAGGATGCTTCATCAGTTGGTTTTGGTGGTATTACAACTGTGGAAGCTGCGGCTTCTAGCTCTAATGTTGTAGACGTATCACCAAATCAGAATCAAACCGGCGAGTACTTTGATGAACTTCATGATATCTTATTCAACGATACCAATTTGGAATCTATCAACCAGGAAGAAGGAAAAGAAGTGGTCAATTTTTATGAGACTACTGCAAATGCGGTTCAAGAAAATGCTTCCTTGCTCAAAGAATCCAACGGCCAGGCATACAGTACATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Myb_DNA-binding Response_reg

Protein Analysis

551

Amino Acids

60.95

Weight (kDa)

5.56

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 14 - 121 3.3e-16 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017706)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g07970
malus_domestica MD02G1229600.v1.1
rosa_chinensis RchiOBHm_Chr1g0341321
rosa_multiflora Rmu_sc0000047.1_g000016 Rmu_sc0037241.1_g000002
rosa_roxburghii Rroxscaffold_4G00311970
rosa_rugosa Rorug01G0157400.1
rosa_samantha Rh1AG172200 Rh1BG140000 Rh1CG160300 Rh1DG172400
rosa_wichuraiana Rw1G014360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 677, 781
Acc36I ACCTGC 1 cut(s) 901
Acc65I GGTACC 1 cut(s) 906
AccB1I GGYRCC 1 cut(s) 906
AccB7I CCANNNNNTGG 1 cut(s) 1166
AccI GTMKAC 1 cut(s) 1455
AciI CCGC 3 cut(s) 1172, 1433, 1595
AclWI GGATC 2 cut(s) 17, 1288
AcoI YGGCCR 3 cut(s) 72, 273, 1633
AcsI RAATTY 6 cut(s) 86, 245, 374, 408, 502, 862
AcyI GRCGYC 2 cut(s) 674, 778
AfaI GTAC 6 cut(s) 42, 463, 908, 1069, 1490, 1648
AfiI CCNNNNNNNGG 5 cut(s) 232, 731, 833, 1166, 1240
AgsI TTSAA 6 cut(s) 103, 221, 768, 977, 1519, 1601
AhlI ACTAGT 1 cut(s) 1253
AjnI CCWGG 4 cut(s) 576, 910, 1545, 1635
AleI CACNNNNGTG 1 cut(s) 821
AluBI AGCT 9 cut(s) 253, 313, 574, 681, 1010, 1190, 1312, 1430, 1443
AluI AGCT 9 cut(s) 253, 313, 574, 681, 1010, 1190, 1312, 1430, 1443
Alw21I GWGCWC 1 cut(s) 576
Alw26I GTCTC 3 cut(s) 449, 1133, 1574
AlwI GGATC 2 cut(s) 17, 1288
AoxI GGCC 3 cut(s) 72, 273, 1633
ApeKI GCWGC 5 cut(s) 253, 320, 718, 721, 1430
ApoI RAATTY 6 cut(s) 86, 245, 374, 408, 502, 862
Asp700I GAANNNNTTC 2 cut(s) 90, 131
Asp718I GGTACC 1 cut(s) 906
AsuHPI GGTGA 5 cut(s) 390, 791, 1126, 1329, 1455
AsuNHI GCTAGC 1 cut(s) 1186
BalI TGGCCA 1 cut(s) 74
BanI GGYRCC 1 cut(s) 906
BanII GRGCYC 1 cut(s) 576
Bbv12I GWGCWC 1 cut(s) 576
BbvI GCAGC 5 cut(s) 240, 307, 730, 733, 1417
BccI CCATC 3 cut(s) 114, 206, 1216
BceAI ACGGC 2 cut(s) 241, 1648
BciT130I CCWGG 4 cut(s) 578, 912, 1547, 1637
BclI TGATCA 2 cut(s) 487, 1300
BcoDI GTCTC 3 cut(s) 449, 1133, 1574
BcuI ACTAGT 1 cut(s) 1253
BfaI CTAG 3 cut(s) 1187, 1254, 1440
BfmI CTRYAG 1 cut(s) 1179
BfuAI ACCTGC 1 cut(s) 901
BisI GCNGC 7 cut(s) 254, 321, 719, 722, 1173, 1431, 1434
BlsI GCNGC 7 cut(s) 255, 322, 720, 723, 1174, 1432, 1435
BmcAI AGTACT 1 cut(s) 1490
Bme1390I CCNGG 4 cut(s) 578, 912, 1547, 1637
BmiI GGNNCC 1 cut(s) 908
BmrFI CCNGG 4 cut(s) 578, 912, 1547, 1637
BmsI GCATC 3 cut(s) 818, 873, 1378
BmtI GCTAGC 1 cut(s) 1190
BpmI CTGGAG 1 cut(s) 560
BpuEI CTTGAG 1 cut(s) 293
BsaBI GATNNNNATC 1 cut(s) 1299
BsaHI GRCGYC 2 cut(s) 674, 778
BsaJI CCNNGG 5 cut(s) 772, 910, 911, 1147, 1234
Bsc4I CCNNNNNNNGG 5 cut(s) 232, 731, 833, 1166, 1240
Bse118I RCCGGY 1 cut(s) 1481
Bse1I ACTGG 2 cut(s) 75, 341
Bse3DI GCAATG 2 cut(s) 135, 541
Bse8I GATNNNNATC 1 cut(s) 1299
BseBI CCWGG 4 cut(s) 578, 912, 1547, 1637
BseDI CCNNGG 5 cut(s) 772, 910, 911, 1147, 1234
BseGI GGATG 2 cut(s) 217, 1393
BseJI GATNNNNATC 1 cut(s) 1299
BseLI CCNNNNNNNGG 5 cut(s) 232, 731, 833, 1166, 1240
BseMI GCAATG 2 cut(s) 135, 541
BseNI ACTGG 2 cut(s) 75, 341
BseX3I CGGCCG 1 cut(s) 273
BseXI GCAGC 5 cut(s) 240, 307, 730, 733, 1417
BseYI CCCAGC 1 cut(s) 1239
BsgI GTGCAG 1 cut(s) 306
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 3 cut(s) 74, 275, 1635
BshNI GGYRCC 1 cut(s) 906
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 576
BsiSI CCGG 1 cut(s) 1482
BslFI GGGAC 2 cut(s) 652, 765
BslI CCNNNNNNNGG 5 cut(s) 232, 731, 833, 1166, 1240
BsmAI GTCTC 3 cut(s) 449, 1133, 1574
BsmFI GGGAC 2 cut(s) 652, 765
BsnI GGCC 3 cut(s) 74, 275, 1635
Bsp1286I GDGCHC 1 cut(s) 576
Bsp143I GATC 5 cut(s) 22, 395, 487, 1280, 1300
Bsp19I CCATGG 2 cut(s) 1147, 1234
BspACI CCGC 3 cut(s) 1172, 1433, 1595
BspANI GGCC 3 cut(s) 74, 275, 1635
BspHI TCATGA 2 cut(s) 490, 1504
BspLI GGNNCC 1 cut(s) 908
BspMI ACCTGC 1 cut(s) 901
BspOI GCTAGC 1 cut(s) 1190
BspPI GGATC 2 cut(s) 17, 1288
BspQI GCTCTTC 1 cut(s) 156
BspT107I GGYRCC 1 cut(s) 906
BsrDI GCAATG 2 cut(s) 135, 541
BsrFI RCCGGY 1 cut(s) 1481
BsrI ACTGG 2 cut(s) 75, 341
BssAI RCCGGY 1 cut(s) 1481
BssECI CCNNGG 5 cut(s) 772, 910, 911, 1147, 1234
BssMI GATC 5 cut(s) 22, 395, 487, 1280, 1300
BssNI GRCGYC 2 cut(s) 674, 778
BssT1I CCWWGG 3 cut(s) 772, 1147, 1234
Bst2UI CCWGG 4 cut(s) 578, 912, 1547, 1637
Bst4CI ACNGT 2 cut(s) 1423, 1646
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 2 cut(s) 674, 778
BstC8I GCNNGC 1 cut(s) 1188
BstDEI CTNAG 1 cut(s) 597
BstDSI CCRYGG 2 cut(s) 1147, 1234
BstF5I GGATG 2 cut(s) 217, 1393
BstKTI GATC 5 cut(s) 25, 398, 490, 1283, 1303
BstMAI GTCTC 3 cut(s) 449, 1133, 1574
BstMBI GATC 5 cut(s) 22, 395, 487, 1280, 1300
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNI CCWGG 4 cut(s) 578, 912, 1547, 1637
BstNSI RCATGY 2 cut(s) 293, 794
BstSCI CCNGG 4 cut(s) 576, 910, 1545, 1635
BstSFI CTRYAG 1 cut(s) 1179
BstV1I GCAGC 5 cut(s) 240, 307, 730, 733, 1417
BstXI CCANNNNNNTGG 1 cut(s) 1040
BstZI CGGCCG 1 cut(s) 273
BsuRI GGCC 3 cut(s) 74, 275, 1635
BtgI CCRYGG 2 cut(s) 1147, 1234
BtsCI GGATG 2 cut(s) 217, 1393
BtsIMutI CAGTG 2 cut(s) 82, 1022
BveI ACCTGC 1 cut(s) 901
Cac8I GCNNGC 1 cut(s) 1188
CciI TCATGA 2 cut(s) 490, 1504
Cfr10I RCCGGY 1 cut(s) 1481
CseI GACGC 1 cut(s) 574
Csp6I GTAC 6 cut(s) 41, 462, 907, 1068, 1489, 1647
CviAII CATG 9 cut(s) 290, 491, 791, 901, 1063, 1089, 1148, 1235, 1505
CviQI GTAC 6 cut(s) 41, 462, 907, 1068, 1489, 1647
DdeI CTNAG 1 cut(s) 597
DpnI GATC 5 cut(s) 24, 397, 489, 1282, 1302
DpnII GATC 5 cut(s) 22, 395, 487, 1280, 1300
EaeI YGGCCR 3 cut(s) 72, 273, 1633
EagI CGGCCG 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Ecl136II GAGCTC 1 cut(s) 574
EclXI CGGCCG 1 cut(s) 273
Eco130I CCWWGG 3 cut(s) 772, 1147, 1234
Eco24I GRGCYC 1 cut(s) 576
Eco32I GATATC 1 cut(s) 1510
Eco52I CGGCCG 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 574
EcoICRI GAGCTC 1 cut(s) 574
EcoRI GAATTC 2 cut(s) 502, 862
EcoRII CCWGG 4 cut(s) 576, 910, 1545, 1635
EcoRV GATATC 1 cut(s) 1510
EcoT14I CCWWGG 3 cut(s) 772, 1147, 1234
EcoT38I GRGCYC 1 cut(s) 576
ErhI CCWWGG 3 cut(s) 772, 1147, 1234
FaeI CATG 9 cut(s) 293, 494, 794, 904, 1066, 1092, 1151, 1238, 1508
FalI AAGNNNNNCTT 2 cut(s) 688, 720
FaqI GGGAC 2 cut(s) 652, 765
FatI CATG 9 cut(s) 289, 490, 790, 900, 1062, 1088, 1147, 1234, 1504
FbaI TGATCA 2 cut(s) 487, 1300
FblI GTMKAC 1 cut(s) 1455
Fnu4HI GCNGC 7 cut(s) 254, 321, 719, 722, 1173, 1431, 1434
FokI GGATG 2 cut(s) 224, 1400
FriOI GRGCYC 1 cut(s) 576
Fsp4HI GCNGC 7 cut(s) 254, 321, 719, 722, 1173, 1431, 1434
FspBI CTAG 3 cut(s) 1187, 1254, 1440
GluI GCNGC 7 cut(s) 254, 321, 719, 722, 1173, 1431, 1434
GsaI CCCAGC 1 cut(s) 1243
GsuI CTGGAG 1 cut(s) 560
HaeIII GGCC 3 cut(s) 74, 275, 1635
HapII CCGG 1 cut(s) 1482
HgaI GACGC 1 cut(s) 574
Hin1I GRCGYC 2 cut(s) 674, 778
Hin1II CATG 9 cut(s) 293, 494, 794, 904, 1066, 1092, 1151, 1238, 1508
HindIII AAGCTT 1 cut(s) 311
HpaII CCGG 1 cut(s) 1482
HphI GGTGA 5 cut(s) 390, 791, 1126, 1329, 1455
Hpy166II GTNNAC 5 cut(s) 41, 734, 1022, 1259, 1456
Hpy188I TCNGA 9 cut(s) 85, 469, 652, 836, 882, 963, 1113, 1290, 1473
Hpy188III TCNNGA 9 cut(s) 100, 226, 239, 491, 522, 590, 1319, 1505, 1601
Hpy8I GTNNAC 5 cut(s) 41, 734, 1022, 1259, 1456
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 2 cut(s) 524, 1547
HpyCH4III ACNGT 2 cut(s) 1423, 1646
HpyCH4IV ACGT 3 cut(s) 674, 778, 1458
HpyCH4V TGCA 3 cut(s) 323, 626, 1589
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 597
HpySE526I ACGT 3 cut(s) 674, 778, 1458
Hsp92I GRCGYC 2 cut(s) 674, 778
Hsp92II CATG 9 cut(s) 293, 494, 794, 904, 1066, 1092, 1151, 1238, 1508
KpnI GGTACC 1 cut(s) 910
Ksp22I TGATCA 2 cut(s) 487, 1300
Kzo9I GATC 5 cut(s) 22, 395, 487, 1280, 1300
LguI GCTCTTC 1 cut(s) 156
LmnI GCTCC 2 cut(s) 544, 579
Lsp1109I GCAGC 5 cut(s) 240, 307, 730, 733, 1417
LweI GCATC 3 cut(s) 818, 873, 1378
MaeI CTAG 3 cut(s) 1187, 1254, 1440
MaeII ACGT 3 cut(s) 674, 778, 1458
MaeIII GTNAC 2 cut(s) 659, 1361
MalI GATC 5 cut(s) 24, 397, 489, 1282, 1302
MboI GATC 5 cut(s) 22, 395, 487, 1280, 1300
MboII GAAGA 5 cut(s) 83, 143, 254, 525, 1562
MfeI CAATTG 1 cut(s) 982
MhlI GDGCHC 1 cut(s) 576
MlsI TGGCCA 1 cut(s) 74
MluNI TGGCCA 1 cut(s) 74
MlyI GAGTC 2 cut(s) 996, 1254
MmeI TCCRAC 2 cut(s) 946, 1653
MnlI CCTC 5 cut(s) 107, 188, 415, 837, 1378
Mox20I TGGCCA 1 cut(s) 74
MroXI GAANNNNTTC 2 cut(s) 90, 131
MscI TGGCCA 1 cut(s) 74
MseI TTAA 8 cut(s) 249, 260, 299, 614, 752, 759, 945, 1197
MslI CAYNNNNRTG 2 cut(s) 821, 1038
Msp20I TGGCCA 1 cut(s) 74
MspI CCGG 1 cut(s) 1482
MspR9I CCNGG 4 cut(s) 578, 912, 1547, 1637
MunI CAATTG 1 cut(s) 982
MvaI CCWGG 4 cut(s) 578, 912, 1547, 1637
MwoI GCNNNNNNNGC 1 cut(s) 146
NcoI CCATGG 2 cut(s) 1147, 1234
NdeII GATC 5 cut(s) 22, 395, 487, 1280, 1300
NheI GCTAGC 1 cut(s) 1186
NlaIII CATG 9 cut(s) 293, 494, 794, 904, 1066, 1092, 1151, 1238, 1508
NlaIV GGNNCC 1 cut(s) 908
NspI RCATGY 2 cut(s) 293, 794
OliI CACNNNNGTG 1 cut(s) 821
PagI TCATGA 2 cut(s) 490, 1504
PasI CCCWGGG 1 cut(s) 911
PciSI GCTCTTC 1 cut(s) 156
PdmI GAANNNNTTC 2 cut(s) 90, 131
PfeI GAWTC 8 cut(s) 593, 739, 1118, 1155, 1204, 1474, 1535, 1625
PflMI CCANNNNNTGG 1 cut(s) 1166
PkrI GCNGC 7 cut(s) 255, 322, 720, 723, 1174, 1432, 1435
PleI GAGTC 2 cut(s) 996, 1254
PpsI GAGTC 2 cut(s) 996, 1254
Psp124BI GAGCTC 1 cut(s) 576
Psp6I CCWGG 4 cut(s) 576, 910, 1545, 1635
PspFI CCCAGC 1 cut(s) 1239
PspGI CCWGG 4 cut(s) 576, 910, 1545, 1635
PspN4I GGNNCC 1 cut(s) 908
RsaI GTAC 6 cut(s) 42, 463, 908, 1069, 1490, 1648
RsaNI GTAC 6 cut(s) 41, 462, 907, 1068, 1489, 1647
RseI CAYNNNNRTG 2 cut(s) 821, 1038
SacI GAGCTC 1 cut(s) 576
SapI GCTCTTC 1 cut(s) 156
SaqAI TTAA 8 cut(s) 249, 260, 299, 614, 752, 759, 945, 1197
SatI GCNGC 7 cut(s) 254, 321, 719, 722, 1173, 1431, 1434
Sau3AI GATC 5 cut(s) 22, 395, 487, 1280, 1300
ScaI AGTACT 1 cut(s) 1490
SchI GAGTC 2 cut(s) 996, 1254
ScrFI CCNGG 4 cut(s) 578, 912, 1547, 1637
SduI GDGCHC 1 cut(s) 576
SfaNI GCATC 3 cut(s) 818, 873, 1378
SfcI CTRYAG 1 cut(s) 1179
SmiMI CAYNNNNRTG 2 cut(s) 821, 1038
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
SpeI ACTAGT 1 cut(s) 1253
SsiI CCGC 3 cut(s) 1172, 1433, 1595
SspMI CTAG 3 cut(s) 1187, 1254, 1440
SstI GAGCTC 1 cut(s) 576
StyD4I CCNGG 4 cut(s) 576, 910, 1545, 1635
StyI CCWWGG 3 cut(s) 772, 1147, 1234
TaaI ACNGT 2 cut(s) 1423, 1646
TaiI ACGT 3 cut(s) 677, 781, 1461
TaqI TCGA 5 cut(s) 238, 429, 707, 1202, 1263
TatI WGTACW 5 cut(s) 40, 461, 1067, 1488, 1646
TauI GCSGC 2 cut(s) 1175, 1436
TfiI GAWTC 8 cut(s) 593, 739, 1118, 1155, 1204, 1474, 1535, 1625
Tru1I TTAA 8 cut(s) 249, 260, 299, 614, 752, 759, 945, 1197
Tru9I TTAA 8 cut(s) 249, 260, 299, 614, 752, 759, 945, 1197
TscAI CASTG 2 cut(s) 82, 1029
TseI GCWGC 5 cut(s) 253, 320, 718, 721, 1430
TspDTI ATGAA 9 cut(s) 124, 889, 1077, 1236, 1304, 1340, 1383, 1493, 1512
TspGWI ACGGA 1 cut(s) 811
TspRI CASTG 2 cut(s) 82, 1029
Van91I CCANNNNNTGG 1 cut(s) 1166
XapI RAATTY 6 cut(s) 86, 245, 374, 408, 502, 862
XceI RCATGY 2 cut(s) 293, 794
XmiI GTMKAC 1 cut(s) 1455
XmnI GAANNNNTTC 2 cut(s) 90, 131
XspI CTAG 3 cut(s) 1187, 1254, 1440
ZraI GACGTC 2 cut(s) 675, 779
ZrmI AGTACT 1 cut(s) 1490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.