Rh1AG172200
MYB Family

response regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0017706
Physical Location & Seq
Forward (+)
33022492 .. 33031139
8648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG172200.1

Sequence Viewer

Length: 1749 bp
ATGACAGACCTTTATCTACCTGATATGGATGGATTTGAAGTCCAGAAAAGGGTTCGAGAAGAATTTAAGCTGCCGTTAATTATGGTTTCGGCCGACGATAGAGAGCATGTCATATTAAAGGCTCTCAAGCTTGGTGCTGCACATTATATAGTCAAACCAGTTTGCTTTGATGATGTGAAAAACCTATGGAAATTTGTTGTCAATGCCGATAGATCACATAAAGAAATTTCTTTTGTTGAGGAAATCGAAAGTGGTGGCGAACAATCAAGTGAGACAAGTACATCTGACGAGGATACAAATGGTGATCATGAGAAAAAGAATTCCAAGAGAAGAAAATCAACAAAGGAAGGCAATGCTCCAAAAAAGGCAAAGTTGACATGGACGCAAGAGCTCCAGGGTCGGTTTCTGGAATCTGTTCATTTTATAGGCCTAGAAAGGGCTGTTCCGAAAACAATTCTTGAGGTCATGAACGTTGAAGGCCTGACTAGAGAAAACGTGGCGAGCCATTTGCAGAAGTATAGACAATTTTTAAGGAGAGTTGCAGTAAAGATTTCAGTAAGTAAATCAGATATTGGTAACAAGTCCCAAACGTCAAGCTATACATTCGGGCAAAGCCAAACTTCGATATTCCAGCAGCAGCCCATTTCTGGACAGAATCTCTCCATAAATCTTATTGCTTCAAGCCTCGGACGTCCCCTTTTTCATGCCAATCACCACGAAGCATCAACCACTTCCGTGCCTCCATTAGGAAACACATCACACTTATATCAACCGAATTCTCTATCACATTTCCAGATGCCGCAACCTGCTTTCATGGGGTACCCAGGGTCTTTCCAACCAGCCAATTACTCATCAGTTAATGGGAGTGGATTTCAGACAAACAATGTTCAAAGCAATTGGTCAAGTGCTAATGAACTCCAAGCTCAAACAAGTCCACTGACCAACCACCTATATGGCAATTACAATAACGATGGCATGAGTACAGGGTTTCAGTTTGGTTCATGGAATGGAACTATGGGATTTCTGAATGATTCTAATAGTCTCATCACCAACAACTACTATGGTGGACTCCCAATGAGTGGTGCTGCTTCTGGAGGGCTAGCTGGATTTAACTCGAATCAAAACCCTAATTTGATGGTGGCGAAATACGGCTGGGCTTCATCAACTAGTGGACTCGATACTAATTTTTTTGGATCGGTTCTGAATGATATTGATCAAAGTGAGCTTCATCAAGAAATGAAAATTACTTCACCAACGGGTAATTTGATGTTCGGTAACAATAATTTTTCAGGCGTGGAGGATGCTTCATCAGTTGGTTTTGGTGGTATTACAACTGTGGAAGCTGCGGCTTCTAGCTCTAATGTTGTAGACGTATCACCAAATCAGAATCAAACCGGCGAGTACTTTGATGAACTTCATGATATCTTATTCAACGATACCAATTTGCAATCTGTCAACCAGGAAGAAGGAAAAGAAGTGGTCAATTTTTATGAGACTAATGCAAATGCGGTTCAAGAAAATGCTTCCTTGCTCAAAGAATCCAACGGCCAGAATTTTAGTAGAGAACTGAACGAAGAACTCGAGTTTGACTGGTTGGATCTATTGGATGCCACAGCAATTCTAGATAATGTCTCCTTAGATGAGGATTGGGATCATGCTGGTGGGTGTCCTGGCCTAGTGGTTCGACATCGAAGTTGGTGGGGAGAATTCGACTTAGGTGGTGGTGCGACGAGTAGGGTGGTGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Myb_DNA-binding Response_reg

Protein Analysis

582

Amino Acids

64.07

Weight (kDa)

4.96

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 2 - 60 2.7e-10 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017706)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g07970
malus_domestica MD02G1229600.v1.1
rosa_chinensis RchiOBHm_Chr1g0341321
rosa_multiflora Rmu_sc0000047.1_g000016 Rmu_sc0037241.1_g000002
rosa_roxburghii Rroxscaffold_4G00311970
rosa_rugosa Rorug01G0157400.1
rosa_samantha Rh1AG172200 Rh1BG140000 Rh1CG160300 Rh1DG172400
rosa_wichuraiana Rw1G014360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 694
Acc36I ACCTGC 1 cut(s) 814
Acc65I GGTACC 1 cut(s) 819
AccB1I GGYRCC 1 cut(s) 819
AccB7I CCANNNNNTGG 1 cut(s) 1079
AccI GTMKAC 1 cut(s) 1368
AciI CCGC 3 cut(s) 800, 1346, 1508
AclI AACGTT 1 cut(s) 471
AclWI GGATC 3 cut(s) 1201, 1605, 1659
AcoI YGGCCR 2 cut(s) 90, 1546
AcsI RAATTY 7 cut(s) 62, 191, 225, 319, 775, 1552, 1706
AcyI GRCGYC 1 cut(s) 691
AfaI GTAC 4 cut(s) 280, 821, 982, 1403
AfiI CCNNNNNNNGG 5 cut(s) 49, 436, 647, 746, 1079
AgsI TTSAA 6 cut(s) 38, 476, 681, 890, 1432, 1514
AhlI ACTAGT 1 cut(s) 1166
AjnI CCWGG 4 cut(s) 393, 823, 1458, 1669
AleI CACNNNNGTG 1 cut(s) 734
AluBI AGCT 9 cut(s) 70, 130, 391, 597, 923, 1103, 1225, 1343, 1356
AluI AGCT 9 cut(s) 70, 130, 391, 597, 923, 1103, 1225, 1343, 1356
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 4 cut(s) 266, 1046, 1487, 1636
AlwI GGATC 3 cut(s) 1201, 1605, 1659
Ama87I CYCGRG 1 cut(s) 1580
AoxI GGCC 5 cut(s) 90, 427, 478, 1546, 1672
ApeKI GCWGC 6 cut(s) 70, 137, 634, 637, 1085, 1343
ApoI RAATTY 7 cut(s) 62, 191, 225, 319, 775, 1552, 1706
Asp700I GAANNNNTTC 1 cut(s) 414
Asp718I GGTACC 1 cut(s) 819
AsuHPI GGTGA 5 cut(s) 314, 704, 1039, 1242, 1368
AsuNHI GCTAGC 1 cut(s) 1099
AvaI CYCGRG 1 cut(s) 1580
BanI GGYRCC 1 cut(s) 819
BanII GRGCYC 1 cut(s) 393
Bbv12I GWGCWC 1 cut(s) 393
BbvI GCAGC 6 cut(s) 57, 124, 646, 649, 1072, 1330
BccI CCATC 3 cut(s) 23, 965, 1129
BceAI ACGGC 3 cut(s) 58, 1165, 1561
BcgI CGANNNNNNTGC 2 cut(s) 490, 524
BciT130I CCWGG 4 cut(s) 395, 825, 1460, 1671
BciVI GTATCC 1 cut(s) 286
BclI TGATCA 2 cut(s) 304, 1213
BcoDI GTCTC 4 cut(s) 266, 1046, 1487, 1636
BcuI ACTAGT 1 cut(s) 1166
BfaI CTAG 7 cut(s) 431, 486, 1100, 1167, 1353, 1622, 1676
BfuAI ACCTGC 1 cut(s) 814
BfuI GTATCC 1 cut(s) 286
BisI GCNGC 8 cut(s) 71, 138, 635, 638, 800, 1086, 1344, 1347
BlsI GCNGC 8 cut(s) 72, 139, 636, 639, 801, 1087, 1345, 1348
BmcAI AGTACT 1 cut(s) 1403
Bme1390I CCNGG 4 cut(s) 395, 825, 1460, 1671
BmeT110I CYCGRG 1 cut(s) 1580
BmiI GGNNCC 1 cut(s) 821
BmrFI CCNGG 4 cut(s) 395, 825, 1460, 1671
BmsI GCATC 4 cut(s) 731, 786, 1291, 1597
BmtI GCTAGC 1 cut(s) 1103
BpmI CTGGAG 2 cut(s) 377, 1113
BpuEI CTTGAG 2 cut(s) 110, 479
BsaBI GATNNNNATC 2 cut(s) 1212, 1650
BsaHI GRCGYC 1 cut(s) 691
BsaJI CCNNGG 4 cut(s) 394, 685, 823, 824
Bsc4I CCNNNNNNNGG 5 cut(s) 49, 436, 647, 746, 1079
Bse118I RCCGGY 1 cut(s) 1394
Bse1I ACTGG 2 cut(s) 158, 1595
Bse3DI GCAATG 1 cut(s) 358
Bse8I GATNNNNATC 2 cut(s) 1212, 1650
BseBI CCWGG 4 cut(s) 395, 825, 1460, 1671
BseDI CCNNGG 4 cut(s) 394, 685, 823, 824
BseGI GGATG 3 cut(s) 34, 1306, 1612
BseJI GATNNNNATC 2 cut(s) 1212, 1650
BseLI CCNNNNNNNGG 5 cut(s) 49, 436, 647, 746, 1079
BseMI GCAATG 1 cut(s) 358
BseNI ACTGG 2 cut(s) 158, 1595
BseX3I CGGCCG 1 cut(s) 90
BseXI GCAGC 6 cut(s) 57, 124, 646, 649, 1072, 1330
BseYI CCCAGC 1 cut(s) 1152
BsgI GTGCAG 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 5 cut(s) 92, 429, 480, 1548, 1674
BshNI GGYRCC 1 cut(s) 819
BsiEI CGRYCG 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 393
BsiHKCI CYCGRG 1 cut(s) 1580
BsiSI CCGG 1 cut(s) 1395
BslFI GGGAC 2 cut(s) 568, 678
BslI CCNNNNNNNGG 5 cut(s) 49, 436, 647, 746, 1079
BsmAI GTCTC 4 cut(s) 266, 1046, 1487, 1636
BsmFI GGGAC 2 cut(s) 568, 678
BsnI GGCC 5 cut(s) 92, 429, 480, 1548, 1674
BsoBI CYCGRG 1 cut(s) 1580
Bsp1286I GDGCHC 1 cut(s) 393
Bsp143I GATC 6 cut(s) 212, 304, 1193, 1213, 1597, 1651
BspACI CCGC 3 cut(s) 800, 1346, 1508
BspANI GGCC 5 cut(s) 92, 429, 480, 1548, 1674
BspHI TCATGA 3 cut(s) 307, 465, 1417
BspLI GGNNCC 1 cut(s) 821
BspMI ACCTGC 1 cut(s) 814
BspOI GCTAGC 1 cut(s) 1103
BspPI GGATC 3 cut(s) 1201, 1605, 1659
BspT107I GGYRCC 1 cut(s) 819
BsrDI GCAATG 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 1394
BsrI ACTGG 2 cut(s) 158, 1595
BssAI RCCGGY 1 cut(s) 1394
BssECI CCNNGG 4 cut(s) 394, 685, 823, 824
BssMI GATC 6 cut(s) 212, 304, 1193, 1213, 1597, 1651
BssNI GRCGYC 1 cut(s) 691
Bst2UI CCWGG 4 cut(s) 395, 825, 1460, 1671
Bst4CI ACNGT 1 cut(s) 1336
BstACI GRCGYC 1 cut(s) 691
BstC8I GCNNGC 2 cut(s) 502, 1101
BstDEI CTNAG 2 cut(s) 1636, 1714
BstENI CCTNNNNNAGG 1 cut(s) 744
BstF5I GGATG 3 cut(s) 34, 1306, 1612
BstKTI GATC 6 cut(s) 215, 307, 1196, 1216, 1600, 1654
BstMAI GTCTC 4 cut(s) 266, 1046, 1487, 1636
BstMBI GATC 6 cut(s) 212, 304, 1193, 1213, 1597, 1651
BstMCI CGRYCG 1 cut(s) 93
BstNI CCWGG 4 cut(s) 395, 825, 1460, 1671
BstNSI RCATGY 1 cut(s) 110
BstSCI CCNGG 4 cut(s) 393, 823, 1458, 1669
BstV1I GCAGC 6 cut(s) 57, 124, 646, 649, 1072, 1330
BstX2I RGATCY 1 cut(s) 1597
BstXI CCANNNNNNTGG 1 cut(s) 953
BstYI RGATCY 1 cut(s) 1597
BstZI CGGCCG 1 cut(s) 90
BsuI GTATCC 1 cut(s) 286
BsuRI GGCC 5 cut(s) 92, 429, 480, 1548, 1674
BtsCI GGATG 3 cut(s) 34, 1306, 1612
BtsIMutI CAGTG 1 cut(s) 935
BveI ACCTGC 1 cut(s) 814
Cac8I GCNNGC 2 cut(s) 502, 1101
CciI TCATGA 3 cut(s) 307, 465, 1417
Cfr10I RCCGGY 1 cut(s) 1394
CseI GACGC 1 cut(s) 391
Csp6I GTAC 4 cut(s) 279, 820, 981, 1402
CviQI GTAC 4 cut(s) 279, 820, 981, 1402
DdeI CTNAG 2 cut(s) 1636, 1714
DpnI GATC 6 cut(s) 214, 306, 1195, 1215, 1599, 1653
DpnII GATC 6 cut(s) 212, 304, 1193, 1213, 1597, 1651
EaeI YGGCCR 2 cut(s) 90, 1546
EagI CGGCCG 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 391
EclXI CGGCCG 1 cut(s) 90
Eco147I AGGCCT 2 cut(s) 429, 480
Eco24I GRGCYC 1 cut(s) 393
Eco32I GATATC 1 cut(s) 1423
Eco52I CGGCCG 1 cut(s) 90
Eco53kI GAGCTC 1 cut(s) 391
Eco88I CYCGRG 1 cut(s) 1580
EcoICRI GAGCTC 1 cut(s) 391
EcoNI CCTNNNNNAGG 1 cut(s) 744
EcoRI GAATTC 3 cut(s) 319, 775, 1706
EcoRII CCWGG 4 cut(s) 393, 823, 1458, 1669
EcoRV GATATC 1 cut(s) 1423
EcoT38I GRGCYC 1 cut(s) 393
FalI AAGNNNNNCTT 2 cut(s) 604, 636
FaqI GGGAC 2 cut(s) 568, 678
FbaI TGATCA 2 cut(s) 304, 1213
FblI GTMKAC 1 cut(s) 1368
Fnu4HI GCNGC 8 cut(s) 71, 138, 635, 638, 800, 1086, 1344, 1347
FokI GGATG 3 cut(s) 41, 1313, 1619
FriOI GRGCYC 1 cut(s) 393
Fsp4HI GCNGC 8 cut(s) 71, 138, 635, 638, 800, 1086, 1344, 1347
FspBI CTAG 7 cut(s) 431, 486, 1100, 1167, 1353, 1622, 1676
GluI GCNGC 8 cut(s) 71, 138, 635, 638, 800, 1086, 1344, 1347
GsaI CCCAGC 1 cut(s) 1156
GsuI CTGGAG 2 cut(s) 377, 1113
HaeIII GGCC 5 cut(s) 92, 429, 480, 1548, 1674
HapII CCGG 1 cut(s) 1395
HgaI GACGC 1 cut(s) 391
Hin1I GRCGYC 1 cut(s) 691
HincII GTYRAC 2 cut(s) 375, 1456
HindII GTYRAC 2 cut(s) 375, 1456
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 8 cut(s) 410, 655, 1031, 1068, 1117, 1173, 1387, 1538
HpaII CCGG 1 cut(s) 1395
HphI GGTGA 5 cut(s) 314, 704, 1039, 1242, 1368
Hpy166II GTNNAC 6 cut(s) 375, 935, 1067, 1172, 1369, 1456
Hpy188I TCNGA 8 cut(s) 286, 447, 568, 689, 876, 1026, 1203, 1386
Hpy8I GTNNAC 6 cut(s) 375, 935, 1067, 1172, 1369, 1456
Hpy99I CGWCG 2 cut(s) 98, 1732
HpyAV CCTTC 3 cut(s) 341, 470, 1460
HpyCH4III ACNGT 1 cut(s) 1336
HpyCH4IV ACGT 5 cut(s) 471, 495, 590, 691, 1371
HpyCH4V TGCA 5 cut(s) 140, 511, 542, 1447, 1502
HpyF3I CTNAG 2 cut(s) 1636, 1714
HpySE526I ACGT 5 cut(s) 471, 495, 590, 691, 1371
Hsp92I GRCGYC 1 cut(s) 691
KpnI GGTACC 1 cut(s) 823
Ksp22I TGATCA 2 cut(s) 304, 1213
Kzo9I GATC 6 cut(s) 212, 304, 1193, 1213, 1597, 1651
LmnI GCTCC 2 cut(s) 361, 396
Lsp1109I GCAGC 6 cut(s) 57, 124, 646, 649, 1072, 1330
LweI GCATC 4 cut(s) 731, 786, 1291, 1597
MaeI CTAG 7 cut(s) 431, 486, 1100, 1167, 1353, 1622, 1676
MaeII ACGT 5 cut(s) 471, 495, 590, 691, 1371
MaeIII GTNAC 2 cut(s) 575, 1274
MalI GATC 6 cut(s) 214, 306, 1195, 1215, 1599, 1653
MboI GATC 6 cut(s) 212, 304, 1193, 1213, 1597, 1651
MboII GAAGA 4 cut(s) 71, 342, 1475, 1586
MfeI CAATTG 1 cut(s) 895
MflI RGATCY 1 cut(s) 1597
MhlI GDGCHC 1 cut(s) 393
MlyI GAGTC 2 cut(s) 1062, 1167
MmeI TCCRAC 3 cut(s) 859, 1566, 1575
MnlI CCTC 8 cut(s) 232, 283, 454, 695, 750, 1088, 1291, 1636
MroXI GAANNNNTTC 1 cut(s) 414
MseI TTAA 6 cut(s) 66, 77, 116, 530, 858, 1110
MslI CAYNNNNRTG 3 cut(s) 734, 951, 1659
MspI CCGG 1 cut(s) 1395
MspR9I CCNGG 4 cut(s) 395, 825, 1460, 1671
MunI CAATTG 1 cut(s) 895
MvaI CCWGG 4 cut(s) 395, 825, 1460, 1671
NdeII GATC 6 cut(s) 212, 304, 1193, 1213, 1597, 1651
NheI GCTAGC 1 cut(s) 1099
NlaIV GGNNCC 1 cut(s) 821
NspI RCATGY 1 cut(s) 110
OliI CACNNNNGTG 1 cut(s) 734
PaeR7I CTCGAG 1 cut(s) 1580
PagI TCATGA 3 cut(s) 307, 465, 1417
PasI CCCWGGG 1 cut(s) 824
PceI AGGCCT 2 cut(s) 429, 480
PcsI WCGNNNNNNNCGW 1 cut(s) 1578
PdmI GAANNNNTTC 1 cut(s) 414
PfeI GAWTC 6 cut(s) 410, 655, 1031, 1117, 1387, 1538
PflMI CCANNNNNTGG 1 cut(s) 1079
PkrI GCNGC 8 cut(s) 72, 139, 636, 639, 801, 1087, 1345, 1348
PleI GAGTC 2 cut(s) 1062, 1167
PpsI GAGTC 2 cut(s) 1062, 1167
Psp124BI GAGCTC 1 cut(s) 393
Psp1406I AACGTT 1 cut(s) 471
Psp6I CCWGG 4 cut(s) 393, 823, 1458, 1669
PspFI CCCAGC 1 cut(s) 1152
PspGI CCWGG 4 cut(s) 393, 823, 1458, 1669
PspN4I GGNNCC 1 cut(s) 821
PspXI VCTCGAGB 1 cut(s) 1580
PsuI RGATCY 1 cut(s) 1597
RsaI GTAC 4 cut(s) 280, 821, 982, 1403
RsaNI GTAC 4 cut(s) 279, 820, 981, 1402
RseI CAYNNNNRTG 3 cut(s) 734, 951, 1659
SacI GAGCTC 1 cut(s) 393
SaqAI TTAA 6 cut(s) 66, 77, 116, 530, 858, 1110
SatI GCNGC 8 cut(s) 71, 138, 635, 638, 800, 1086, 1344, 1347
Sau3AI GATC 6 cut(s) 212, 304, 1193, 1213, 1597, 1651
ScaI AGTACT 1 cut(s) 1403
SchI GAGTC 2 cut(s) 1062, 1167
ScrFI CCNGG 4 cut(s) 395, 825, 1460, 1671
SduI GDGCHC 1 cut(s) 393
SfaNI GCATC 4 cut(s) 731, 786, 1291, 1597
Sfr274I CTCGAG 1 cut(s) 1580
SlaI CTCGAG 1 cut(s) 1580
SmiMI CAYNNNNRTG 3 cut(s) 734, 951, 1659
SmlI CTYRAG 3 cut(s) 125, 458, 1580
SmoI CTYRAG 3 cut(s) 125, 458, 1580
SpeI ACTAGT 1 cut(s) 1166
SseBI AGGCCT 2 cut(s) 429, 480
SsiI CCGC 3 cut(s) 800, 1346, 1508
SspMI CTAG 7 cut(s) 431, 486, 1100, 1167, 1353, 1622, 1676
SstI GAGCTC 1 cut(s) 393
StuI AGGCCT 2 cut(s) 429, 480
StyD4I CCNGG 4 cut(s) 393, 823, 1458, 1669
TaaI ACNGT 1 cut(s) 1336
TaiI ACGT 5 cut(s) 474, 498, 593, 694, 1374
TaqI TCGA 9 cut(s) 55, 246, 623, 1115, 1176, 1581, 1684, 1690, 1710
TatI WGTACW 3 cut(s) 278, 980, 1401
TauI GCSGC 2 cut(s) 802, 1349
TfiI GAWTC 6 cut(s) 410, 655, 1031, 1117, 1387, 1538
Tru1I TTAA 6 cut(s) 66, 77, 116, 530, 858, 1110
Tru9I TTAA 6 cut(s) 66, 77, 116, 530, 858, 1110
TscAI CASTG 1 cut(s) 942
TseI GCWGC 6 cut(s) 70, 137, 634, 637, 1085, 1343
TspGWI ACGGA 1 cut(s) 724
TspRI CASTG 1 cut(s) 942
Van91I CCANNNNNTGG 1 cut(s) 1079
XagI CCTNNNNNAGG 1 cut(s) 744
XapI RAATTY 7 cut(s) 62, 191, 225, 319, 775, 1552, 1706
XbaI TCTAGA 1 cut(s) 1621
XceI RCATGY 1 cut(s) 110
XhoI CTCGAG 1 cut(s) 1580
XmiI GTMKAC 1 cut(s) 1368
XmnI GAANNNNTTC 1 cut(s) 414
XspI CTAG 7 cut(s) 431, 486, 1100, 1167, 1353, 1622, 1676
ZraI GACGTC 1 cut(s) 692
ZrmI AGTACT 1 cut(s) 1403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.