Rh1DG172400
MYB Family

response regulator

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
35527726 .. 35550965
23240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG172400.1

Sequence Viewer

Length: 1704 bp
ATGACAGACCTTTATCTACCTGATATGGATGGATTTGAAGTCCAGAAAAGGGTTCGAGAAGAATTTAAGCTGCCGTTAATTATGGTTTCGGCCGACGATAGAGAGCATGTCATATTAAAGGCTCTCAAGCTTGGTGCTGCACATTATATAGTCAAACCAGTTTGCTTTGATGATGTGAAAAACCTATGGAAATTTGTTGTCAATGCCGATAGATCACCGAAAGAAATTTCTTTTGTTGAGGAAATCGAAAGTGGTGGCGAACAATCAAGTGAGACAAGTACATCTGACGAGAATACAAATAGTGATCATGAGAAAAAGAATTCCAAGAGAAGAAAATCAAGAAAGGAAGGCAATGCTCCAAAAAAGGCAAAGTTGATATGGACGCAAGAGCTCCAGGCTCGGTTTCTGGAATCTGTTCATTTTATAGGCCTAGAAAGGGCTGTTCCAAAAACAATTCTTGAGGTCATGAACGTTGAAGGCCTGACTAGAGAAAACGTGGCGAGCCATTTGCAGAAGTATAGACAATTTTTAAGGAGAGTTGCAGTAAAGATTTCAGTAAGTAAATCGGATATTGGTAACAAGTCCCAGACGTCAAGCTCTACATTCGGGCAAAGTCAAACTTCGATATTCCAGCAGCAGCCCATTTGTGGACAGAATCTCTCCATATTAAATCTTAATGCTTCAAGCCTTGGACGTCCCCTTTTACATGCCAATCACCACGAAGCATCAACCACTTCCGTGCCTCCATTCGGAAACACATCACACTTATATCAACCGAATTCTCTATCACATTTTCAGATGCCACAACCTGCTTTCATGGGGTACCCAGGGTCTTTCCAACCAGCCAATTACTCATCAGTTAATGGGAGTGGATTTCAGACAAATAATGTTCAAAGCAATTGGTCAAGTGCTAATGGACTCCAAGCTCAAACAAGTCCACTGACCAACCACCTATATGGCAATTACAATAACTATGGCATGAGTACAGGGTTTCAGTTTGGTTCATGGAATGGAACTATGGGATTTCTGAATGATTCTAATAGTCTCATCACCAACAACTACCATGGTGGAATCCCAATGAGTGGTGCGGCTTCTGTAGGGCTAGCTGGATTTAACTCGAATCAAAACCCTAATTTGATGGTGGCGAACCATGGCTGGGCTTCATCAACTAGTGGACTCGATACTAATTTTTTTGGATCGTTTCTGAATGATATTGATCAAAGTGAGCTTCATCAAGAAATGAACAATACTTCACCAACGGGTAATTTGATGTTCGGTAACAATAATTTTTCAGGCGTGGAGGATGCTTCATCAGTTGGTTTTGGTGGTATTACAACTGTGGAAGCTGCGGCTTCTAGCTCTAATGTTGTAGACGTATCACCAAATCAGAATCAAACCGGCGAGTACTTTGATGAACTTCATGATATCTTATTCAACGATACCAATTTGGAATCTATCAACCAGGAAGAAGGAAAAGAAGTGGTCAATTTTTATGAGACTACTGCAAATGCGGTTCAAGAAAATGCTTCCTTGCTCAAAGAATCCAACGGCCAGAATTTTAATAGAGAACTCAACGAAGAACTCGAGTTTGACTGGTTGGATCTATTGGATGCCACAGCAATTCTAGATAATGTCTCCTTAGATGAGGATTGGGATCGTGCTGGTGGGTGTCCTGGCCTGGTGGTTCGACATCGAAGTTGGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

567

Amino Acids

62.6

Weight (kDa)

5.07

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 2 - 60 2.6e-10 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017706)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 593, 697
Acc36I ACCTGC 1 cut(s) 817
Acc65I GGTACC 1 cut(s) 822
AccB1I GGYRCC 1 cut(s) 822
AccB7I CCANNNNNTGG 1 cut(s) 1082
AccI GTMKAC 1 cut(s) 1371
AciI CCGC 3 cut(s) 1088, 1349, 1511
AclI AACGTT 1 cut(s) 471
AclWI GGATC 3 cut(s) 1204, 1608, 1662
AcoI YGGCCR 2 cut(s) 90, 1549
AcsI RAATTY 6 cut(s) 62, 191, 225, 319, 778, 1555
AcyI GRCGYC 2 cut(s) 590, 694
AfaI GTAC 4 cut(s) 280, 824, 985, 1406
AfiI CCNNNNNNNGG 6 cut(s) 49, 436, 647, 749, 1082, 1156
AgsI TTSAA 6 cut(s) 38, 476, 684, 893, 1435, 1517
AhlI ACTAGT 1 cut(s) 1169
AjnI CCWGG 5 cut(s) 393, 826, 1461, 1672, 1677
AleI CACNNNNGTG 1 cut(s) 737
AluBI AGCT 9 cut(s) 70, 130, 391, 597, 926, 1106, 1228, 1346, 1359
AluI AGCT 9 cut(s) 70, 130, 391, 597, 926, 1106, 1228, 1346, 1359
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 4 cut(s) 266, 1049, 1490, 1639
AlwI GGATC 3 cut(s) 1204, 1608, 1662
Ama87I CYCGRG 1 cut(s) 1583
AoxI GGCC 5 cut(s) 90, 427, 478, 1549, 1675
ApeKI GCWGC 5 cut(s) 70, 137, 634, 637, 1346
ApoI RAATTY 6 cut(s) 62, 191, 225, 319, 778, 1555
Asp700I GAANNNNTTC 1 cut(s) 414
Asp718I GGTACC 1 cut(s) 822
AsuHPI GGTGA 5 cut(s) 207, 707, 1042, 1245, 1371
AsuNHI GCTAGC 1 cut(s) 1102
AvaI CYCGRG 1 cut(s) 1583
BanI GGYRCC 1 cut(s) 822
BanII GRGCYC 1 cut(s) 393
Bbv12I GWGCWC 1 cut(s) 393
BbvI GCAGC 5 cut(s) 57, 124, 646, 649, 1333
BccI CCATC 2 cut(s) 23, 1132
BceAI ACGGC 2 cut(s) 58, 1564
BcgI CGANNNNNNTGC 2 cut(s) 490, 524
BciT130I CCWGG 5 cut(s) 395, 828, 1463, 1674, 1679
BclI TGATCA 2 cut(s) 304, 1216
BcoDI GTCTC 4 cut(s) 266, 1049, 1490, 1639
BcuI ACTAGT 1 cut(s) 1169
BfaI CTAG 6 cut(s) 431, 486, 1103, 1170, 1356, 1625
BfmI CTRYAG 1 cut(s) 1095
BfuAI ACCTGC 1 cut(s) 817
BisI GCNGC 7 cut(s) 71, 138, 635, 638, 1089, 1347, 1350
BlsI GCNGC 7 cut(s) 72, 139, 636, 639, 1090, 1348, 1351
BmcAI AGTACT 1 cut(s) 1406
Bme1390I CCNGG 5 cut(s) 395, 828, 1463, 1674, 1679
BmeT110I CYCGRG 1 cut(s) 1583
BmiI GGNNCC 1 cut(s) 824
BmrFI CCNGG 5 cut(s) 395, 828, 1463, 1674, 1679
BmsI GCATC 4 cut(s) 734, 789, 1294, 1600
BmtI GCTAGC 1 cut(s) 1106
BpmI CTGGAG 1 cut(s) 377
BpuEI CTTGAG 2 cut(s) 110, 479
BsaBI GATNNNNATC 2 cut(s) 1215, 1653
BsaHI GRCGYC 2 cut(s) 590, 694
BsaJI CCNNGG 5 cut(s) 688, 826, 827, 1063, 1150
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 436, 647, 749, 1082, 1156
Bse118I RCCGGY 1 cut(s) 1397
Bse1I ACTGG 2 cut(s) 158, 1598
Bse3DI GCAATG 1 cut(s) 358
Bse8I GATNNNNATC 2 cut(s) 1215, 1653
BseBI CCWGG 5 cut(s) 395, 828, 1463, 1674, 1679
BseDI CCNNGG 5 cut(s) 688, 826, 827, 1063, 1150
BseGI GGATG 3 cut(s) 34, 1309, 1615
BseJI GATNNNNATC 2 cut(s) 1215, 1653
BseLI CCNNNNNNNGG 6 cut(s) 49, 436, 647, 749, 1082, 1156
BseMI GCAATG 1 cut(s) 358
BseNI ACTGG 2 cut(s) 158, 1598
BseX3I CGGCCG 1 cut(s) 90
BseXI GCAGC 5 cut(s) 57, 124, 646, 649, 1333
BseYI CCCAGC 1 cut(s) 1155
BsgI GTGCAG 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 5 cut(s) 92, 429, 480, 1551, 1677
BshNI GGYRCC 1 cut(s) 822
BsiEI CGRYCG 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 393
BsiHKCI CYCGRG 1 cut(s) 1583
BsiSI CCGG 1 cut(s) 1398
BslFI GGGAC 2 cut(s) 568, 681
BslI CCNNNNNNNGG 6 cut(s) 49, 436, 647, 749, 1082, 1156
BsmAI GTCTC 4 cut(s) 266, 1049, 1490, 1639
BsmFI GGGAC 2 cut(s) 568, 681
BsnI GGCC 5 cut(s) 92, 429, 480, 1551, 1677
BsoBI CYCGRG 1 cut(s) 1583
Bsp1286I GDGCHC 1 cut(s) 393
Bsp143I GATC 6 cut(s) 212, 304, 1196, 1216, 1600, 1654
Bsp19I CCATGG 2 cut(s) 1063, 1150
BspACI CCGC 3 cut(s) 1088, 1349, 1511
BspANI GGCC 5 cut(s) 92, 429, 480, 1551, 1677
BspHI TCATGA 3 cut(s) 307, 465, 1420
BspLI GGNNCC 1 cut(s) 824
BspMI ACCTGC 1 cut(s) 817
BspOI GCTAGC 1 cut(s) 1106
BspPI GGATC 3 cut(s) 1204, 1608, 1662
BspT107I GGYRCC 1 cut(s) 822
BsrDI GCAATG 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 1397
BsrI ACTGG 2 cut(s) 158, 1598
BssAI RCCGGY 1 cut(s) 1397
BssECI CCNNGG 5 cut(s) 688, 826, 827, 1063, 1150
BssMI GATC 6 cut(s) 212, 304, 1196, 1216, 1600, 1654
BssNI GRCGYC 2 cut(s) 590, 694
BssT1I CCWWGG 3 cut(s) 688, 1063, 1150
Bst2UI CCWGG 5 cut(s) 395, 828, 1463, 1674, 1679
Bst4CI ACNGT 1 cut(s) 1339
BstACI GRCGYC 2 cut(s) 590, 694
BstC8I GCNNGC 2 cut(s) 502, 1104
BstDEI CTNAG 1 cut(s) 1639
BstDSI CCRYGG 2 cut(s) 1063, 1150
BstF5I GGATG 3 cut(s) 34, 1309, 1615
BstKTI GATC 6 cut(s) 215, 307, 1199, 1219, 1603, 1657
BstMAI GTCTC 4 cut(s) 266, 1049, 1490, 1639
BstMBI GATC 6 cut(s) 212, 304, 1196, 1216, 1600, 1654
BstMCI CGRYCG 1 cut(s) 93
BstNI CCWGG 5 cut(s) 395, 828, 1463, 1674, 1679
BstNSI RCATGY 2 cut(s) 110, 710
BstSCI CCNGG 5 cut(s) 393, 826, 1461, 1672, 1677
BstSFI CTRYAG 1 cut(s) 1095
BstV1I GCAGC 5 cut(s) 57, 124, 646, 649, 1333
BstX2I RGATCY 1 cut(s) 1600
BstXI CCANNNNNNTGG 1 cut(s) 956
BstYI RGATCY 1 cut(s) 1600
BstZI CGGCCG 1 cut(s) 90
BsuRI GGCC 5 cut(s) 92, 429, 480, 1551, 1677
BtgI CCRYGG 2 cut(s) 1063, 1150
BtsCI GGATG 3 cut(s) 34, 1309, 1615
BtsIMutI CAGTG 1 cut(s) 938
BveI ACCTGC 1 cut(s) 817
Cac8I GCNNGC 2 cut(s) 502, 1104
CciI TCATGA 3 cut(s) 307, 465, 1420
Cfr10I RCCGGY 1 cut(s) 1397
CseI GACGC 1 cut(s) 391
Csp6I GTAC 4 cut(s) 279, 823, 984, 1405
CviQI GTAC 4 cut(s) 279, 823, 984, 1405
DdeI CTNAG 1 cut(s) 1639
DpnI GATC 6 cut(s) 214, 306, 1198, 1218, 1602, 1656
DpnII GATC 6 cut(s) 212, 304, 1196, 1216, 1600, 1654
EaeI YGGCCR 2 cut(s) 90, 1549
EagI CGGCCG 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 391
EclXI CGGCCG 1 cut(s) 90
Eco130I CCWWGG 3 cut(s) 688, 1063, 1150
Eco147I AGGCCT 2 cut(s) 429, 480
Eco24I GRGCYC 1 cut(s) 393
Eco32I GATATC 1 cut(s) 1426
Eco52I CGGCCG 1 cut(s) 90
Eco53kI GAGCTC 1 cut(s) 391
Eco88I CYCGRG 1 cut(s) 1583
EcoICRI GAGCTC 1 cut(s) 391
EcoRI GAATTC 2 cut(s) 319, 778
EcoRII CCWGG 5 cut(s) 393, 826, 1461, 1672, 1677
EcoRV GATATC 1 cut(s) 1426
EcoT14I CCWWGG 3 cut(s) 688, 1063, 1150
EcoT38I GRGCYC 1 cut(s) 393
ErhI CCWWGG 3 cut(s) 688, 1063, 1150
FalI AAGNNNNNCTT 2 cut(s) 604, 636
FaqI GGGAC 2 cut(s) 568, 681
FbaI TGATCA 2 cut(s) 304, 1216
FblI GTMKAC 1 cut(s) 1371
Fnu4HI GCNGC 7 cut(s) 71, 138, 635, 638, 1089, 1347, 1350
FokI GGATG 3 cut(s) 41, 1316, 1622
FriOI GRGCYC 1 cut(s) 393
Fsp4HI GCNGC 7 cut(s) 71, 138, 635, 638, 1089, 1347, 1350
FspBI CTAG 6 cut(s) 431, 486, 1103, 1170, 1356, 1625
GluI GCNGC 7 cut(s) 71, 138, 635, 638, 1089, 1347, 1350
GsaI CCCAGC 1 cut(s) 1159
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 5 cut(s) 92, 429, 480, 1551, 1677
HapII CCGG 1 cut(s) 1398
HgaI GACGC 1 cut(s) 391
Hin1I GRCGYC 2 cut(s) 590, 694
HindIII AAGCTT 1 cut(s) 128
HpaII CCGG 1 cut(s) 1398
HphI GGTGA 5 cut(s) 207, 707, 1042, 1245, 1371
Hpy166II GTNNAC 4 cut(s) 650, 938, 1175, 1372
Hpy188I TCNGA 8 cut(s) 286, 568, 752, 798, 879, 1029, 1206, 1389
Hpy8I GTNNAC 4 cut(s) 650, 938, 1175, 1372
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 3 cut(s) 341, 470, 1463
HpyCH4III ACNGT 1 cut(s) 1339
HpyCH4IV ACGT 5 cut(s) 471, 495, 590, 694, 1374
HpyCH4V TGCA 4 cut(s) 140, 511, 542, 1505
HpyF3I CTNAG 1 cut(s) 1639
HpySE526I ACGT 5 cut(s) 471, 495, 590, 694, 1374
Hsp92I GRCGYC 2 cut(s) 590, 694
KpnI GGTACC 1 cut(s) 826
Ksp22I TGATCA 2 cut(s) 304, 1216
Kzo9I GATC 6 cut(s) 212, 304, 1196, 1216, 1600, 1654
LmnI GCTCC 2 cut(s) 361, 396
Lsp1109I GCAGC 5 cut(s) 57, 124, 646, 649, 1333
LweI GCATC 4 cut(s) 734, 789, 1294, 1600
MaeI CTAG 6 cut(s) 431, 486, 1103, 1170, 1356, 1625
MaeII ACGT 5 cut(s) 471, 495, 590, 694, 1374
MaeIII GTNAC 2 cut(s) 575, 1277
MalI GATC 6 cut(s) 214, 306, 1198, 1218, 1602, 1656
MboI GATC 6 cut(s) 212, 304, 1196, 1216, 1600, 1654
MboII GAAGA 4 cut(s) 71, 342, 1478, 1589
MfeI CAATTG 1 cut(s) 898
MflI RGATCY 1 cut(s) 1600
MhlI GDGCHC 1 cut(s) 393
MlyI GAGTC 2 cut(s) 912, 1170
MmeI TCCRAC 3 cut(s) 862, 1569, 1578
MnlI CCTC 5 cut(s) 232, 454, 753, 1294, 1639
MroXI GAANNNNTTC 1 cut(s) 414
MseI TTAA 9 cut(s) 66, 77, 116, 530, 668, 675, 861, 1113, 1560
MslI CAYNNNNRTG 2 cut(s) 737, 954
MspI CCGG 1 cut(s) 1398
MspR9I CCNGG 5 cut(s) 395, 828, 1463, 1674, 1679
MunI CAATTG 1 cut(s) 898
MvaI CCWGG 5 cut(s) 395, 828, 1463, 1674, 1679
NcoI CCATGG 2 cut(s) 1063, 1150
NdeII GATC 6 cut(s) 212, 304, 1196, 1216, 1600, 1654
NheI GCTAGC 1 cut(s) 1102
NlaIV GGNNCC 1 cut(s) 824
NspI RCATGY 2 cut(s) 110, 710
OliI CACNNNNGTG 1 cut(s) 737
PaeR7I CTCGAG 1 cut(s) 1583
PagI TCATGA 3 cut(s) 307, 465, 1420
PasI CCCWGGG 1 cut(s) 827
PceI AGGCCT 2 cut(s) 429, 480
PcsI WCGNNNNNNNCGW 1 cut(s) 1581
PdmI GAANNNNTTC 1 cut(s) 414
PfeI GAWTC 8 cut(s) 410, 655, 1034, 1071, 1120, 1390, 1451, 1541
PflMI CCANNNNNTGG 1 cut(s) 1082
PkrI GCNGC 7 cut(s) 72, 139, 636, 639, 1090, 1348, 1351
PleI GAGTC 2 cut(s) 912, 1170
PpsI GAGTC 2 cut(s) 912, 1170
Psp124BI GAGCTC 1 cut(s) 393
Psp1406I AACGTT 1 cut(s) 471
Psp6I CCWGG 5 cut(s) 393, 826, 1461, 1672, 1677
PspFI CCCAGC 1 cut(s) 1155
PspGI CCWGG 5 cut(s) 393, 826, 1461, 1672, 1677
PspN4I GGNNCC 1 cut(s) 824
PspXI VCTCGAGB 1 cut(s) 1583
PsuI RGATCY 1 cut(s) 1600
RsaI GTAC 4 cut(s) 280, 824, 985, 1406
RsaNI GTAC 4 cut(s) 279, 823, 984, 1405
RseI CAYNNNNRTG 2 cut(s) 737, 954
SacI GAGCTC 1 cut(s) 393
SaqAI TTAA 9 cut(s) 66, 77, 116, 530, 668, 675, 861, 1113, 1560
SatI GCNGC 7 cut(s) 71, 138, 635, 638, 1089, 1347, 1350
Sau3AI GATC 6 cut(s) 212, 304, 1196, 1216, 1600, 1654
ScaI AGTACT 1 cut(s) 1406
SchI GAGTC 2 cut(s) 912, 1170
ScrFI CCNGG 5 cut(s) 395, 828, 1463, 1674, 1679
SduI GDGCHC 1 cut(s) 393
SfaNI GCATC 4 cut(s) 734, 789, 1294, 1600
SfcI CTRYAG 1 cut(s) 1095
Sfr274I CTCGAG 1 cut(s) 1583
SlaI CTCGAG 1 cut(s) 1583
SmiMI CAYNNNNRTG 2 cut(s) 737, 954
SmlI CTYRAG 3 cut(s) 125, 458, 1583
SmoI CTYRAG 3 cut(s) 125, 458, 1583
SpeI ACTAGT 1 cut(s) 1169
SseBI AGGCCT 2 cut(s) 429, 480
SsiI CCGC 3 cut(s) 1088, 1349, 1511
SspMI CTAG 6 cut(s) 431, 486, 1103, 1170, 1356, 1625
SstI GAGCTC 1 cut(s) 393
StuI AGGCCT 2 cut(s) 429, 480
StyD4I CCNGG 5 cut(s) 393, 826, 1461, 1672, 1677
StyI CCWWGG 3 cut(s) 688, 1063, 1150
TaaI ACNGT 1 cut(s) 1339
TaiI ACGT 5 cut(s) 474, 498, 593, 697, 1377
TaqI TCGA 8 cut(s) 55, 246, 623, 1118, 1179, 1584, 1687, 1693
TatI WGTACW 3 cut(s) 278, 983, 1404
TauI GCSGC 2 cut(s) 1091, 1352
TfiI GAWTC 8 cut(s) 410, 655, 1034, 1071, 1120, 1390, 1451, 1541
Tru1I TTAA 9 cut(s) 66, 77, 116, 530, 668, 675, 861, 1113, 1560
Tru9I TTAA 9 cut(s) 66, 77, 116, 530, 668, 675, 861, 1113, 1560
TscAI CASTG 1 cut(s) 945
TseI GCWGC 5 cut(s) 70, 137, 634, 637, 1346
TspGWI ACGGA 1 cut(s) 727
TspRI CASTG 1 cut(s) 945
Van91I CCANNNNNTGG 1 cut(s) 1082
XapI RAATTY 6 cut(s) 62, 191, 225, 319, 778, 1555
XbaI TCTAGA 1 cut(s) 1624
XceI RCATGY 2 cut(s) 110, 710
XhoI CTCGAG 1 cut(s) 1583
XmiI GTMKAC 1 cut(s) 1371
XmnI GAANNNNTTC 1 cut(s) 414
XspI CTAG 6 cut(s) 431, 486, 1103, 1170, 1356, 1625
ZraI GACGTC 2 cut(s) 591, 695
ZrmI AGTACT 1 cut(s) 1406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.