Rw1G014360
MYB Family

response regulator

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
32061716 .. 32066990
5275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G014360.1

Sequence Viewer

Length: 1758 bp
ATGGTTTTCCAAGGACAATCTGATCCTGTCAAACTTCGTGTACTTGTTATAGGTTATGACCCTACATTTCTGGCCAGTATTTCTGAATTTCTTCGCCTCTTGAACCATCAAGTTTGGACATATACGAACCCATTAATTGCTTTCTCTGCTCTTCGGGTTAGGAGAAACTTTTATGACCTCATTATGACAGACCTGTATCTACCTGATATGGATGGATTTGAAGTCCAGAAAAGGGTTCGAGAAGAATTTAAGCTGCCGTTAATTATGGTTTCGGCCGACGATAGAGAGCATGTCATATTAAAGGCTCTCAAGCTTGGTGCTGCACATTATATAGTCAAACCAGTTTGCTTTGATGATGTGAAAAACCTATGGAAATTTGTTGTCAATGCCGATAGATCACATAAAGAAATTTCTTTTGTTGAGGAAATCGAAAGTGGTGGCGAACAATCAAGTGAGACAAAGAAAAAATCAACAAAGGAAGGCAAAGCTCCAAAAAAGGCAAAGTTGATATGGACGCAAGAGCTCCAGGCTCGATTTCTGGAATCTGTTCATTTTATAGGCCTAGAAAGGGCTGTTCCGAAAACAATTCTTGAGGTCATGAACGTTGAAGGCCTGACTAGAGAAAACGTGGCGAGCCATTTGCAGAAGTATAGACAATTTTTAAGGAGAGTTGCAGTAAAGATTTCAGTAAGTAAATCGGATATTGGTAACAAGTCCCAGACGTCAAGCTCTACATTCGGGCAAAGCCAAACTTCGATATTCCAGCAGCAGCCCATTTCTGGACAGAATCTCTCCATAAATCTTATTGCTTCAAGCCTCGGACGTCCCCTTTTTCATGCCAATCACCACGAAGCATCAACCACTTCCGTGCCTCCATTCGGAAACACATCACACTTATATCAACCGAATTCTCTATCACATTTCCAGATGCCGCAACCTGCTTTCATGGGGTACCCAGGGTCTTTCCAACCAGCCAATTACTCATCAGTTAATGGGAGTGGATTTCAGACAAACAATGTTCAAAGCAATTGGTCAAGTGCTAATGGACTCCAAGCTCAAACAAGTCCACTGACCAACCACCTATATGGCAATTACAATAACGATGGCATGAGTACAGGGTTTCAGTTTGGTTCATGGAATGGAACTATGGGATTTCTGAATGATTCTAATAATCTCATCACCAACAACTACTATGGTGGACTCCCAATGAGTGGTGCTGCTTCTGTAGGGCTAGCTGGATTTAACTCGAATCAAAACCCTAATTTGATGGGGCGAAATACGGCTGGGCTTCAACAACTACTTCATCAAGAAATGAACAATACTTCACCAACGGGAAATTTGATGTTCGGTAACAATAAATTTTCAGGCGTGGAGGATGCTTCATCAGTTGGTTTTGGTGGTATTACAACTGTGGAAGCTGCGGCTTCTAGCTCTAATGTTGTAGACGTATCACCAAATCAGAATCAAACCGGCGAGTACTTTGATGAACTTCATGATATCTTATTCAACGATACCAATTTGCAATCTGTCAACCAGGAAGAAGGAAAAGAAGTGGTCAATTTTTATGAGATTAATGCAAATGCGGTTCAAGAAAATGCTTCCTTGCTCAAAGAATCCAACGGCCAGAATTTTAATAAAGAACTGAACGAAGAACTCGAGTTTGACTGGTTGGATCTATTGGATGCCACAGCAATTCTAGATAATGTCTCCTTAGATGAGGAATGGAAGAAGTTTATGGACTCAATCCTCAACCACTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

585

Amino Acids

65.09

Weight (kDa)

5.44

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 14 - 121 1.7e-16 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017706)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 725, 826
Acc36I ACCTGC 1 cut(s) 946
Acc65I GGTACC 1 cut(s) 951
AccB1I GGYRCC 1 cut(s) 951
AccB7I CCANNNNNTGG 1 cut(s) 1211
AccI GTMKAC 1 cut(s) 1443
AciI CCGC 3 cut(s) 932, 1421, 1583
AclI AACGTT 1 cut(s) 603
AclWI GGATC 2 cut(s) 17, 1680
AcoI YGGCCR 3 cut(s) 72, 273, 1621
AcsI RAATTY 8 cut(s) 86, 245, 374, 408, 907, 1336, 1358, 1627
AcyI GRCGYC 2 cut(s) 722, 823
AfaI GTAC 4 cut(s) 42, 953, 1114, 1478
AfiI CCNNNNNNNGG 5 cut(s) 232, 568, 779, 878, 1211
AgsI TTSAA 8 cut(s) 103, 221, 608, 813, 1022, 1292, 1507, 1589
AjnI CCWGG 3 cut(s) 525, 955, 1533
AleI CACNNNNGTG 1 cut(s) 866
AluBI AGCT 9 cut(s) 253, 313, 488, 523, 729, 1055, 1235, 1418, 1431
AluI AGCT 9 cut(s) 253, 313, 488, 523, 729, 1055, 1235, 1418, 1431
Alw21I GWGCWC 1 cut(s) 525
Alw26I GTCTC 2 cut(s) 449, 1711
AlwI GGATC 2 cut(s) 17, 1680
Ama87I CYCGRG 1 cut(s) 1655
AoxI GGCC 5 cut(s) 72, 273, 559, 610, 1621
ApeKI GCWGC 6 cut(s) 253, 320, 766, 769, 1217, 1418
ApoI RAATTY 8 cut(s) 86, 245, 374, 408, 907, 1336, 1358, 1627
AseI ATTAAT 2 cut(s) 134, 1572
Asp700I GAANNNNTTC 2 cut(s) 90, 546
Asp718I GGTACC 1 cut(s) 951
AsuHPI GGTGA 4 cut(s) 836, 1171, 1317, 1443
AsuNHI GCTAGC 1 cut(s) 1231
AvaI CYCGRG 1 cut(s) 1655
BalI TGGCCA 1 cut(s) 74
BanI GGYRCC 1 cut(s) 951
BanII GRGCYC 1 cut(s) 525
Bbv12I GWGCWC 1 cut(s) 525
BbvI GCAGC 6 cut(s) 240, 307, 778, 781, 1204, 1405
BccI CCATC 4 cut(s) 114, 206, 1097, 1261
BceAI ACGGC 3 cut(s) 241, 1296, 1636
BcgI CGANNNNNNTGC 2 cut(s) 622, 656
BciT130I CCWGG 3 cut(s) 527, 957, 1535
BcoDI GTCTC 2 cut(s) 449, 1711
BfaI CTAG 5 cut(s) 563, 618, 1232, 1428, 1697
BfmI CTRYAG 1 cut(s) 1224
BfuAI ACCTGC 1 cut(s) 946
BisI GCNGC 8 cut(s) 254, 321, 767, 770, 932, 1218, 1419, 1422
BlsI GCNGC 8 cut(s) 255, 322, 768, 771, 933, 1219, 1420, 1423
BmcAI AGTACT 1 cut(s) 1478
Bme1390I CCNGG 3 cut(s) 527, 957, 1535
BmeT110I CYCGRG 1 cut(s) 1655
BmiI GGNNCC 1 cut(s) 953
BmrFI CCNGG 3 cut(s) 527, 957, 1535
BmsI GCATC 4 cut(s) 863, 918, 1366, 1672
BmtI GCTAGC 1 cut(s) 1235
BpmI CTGGAG 1 cut(s) 509
BpuEI CTTGAG 2 cut(s) 293, 611
BsaHI GRCGYC 2 cut(s) 722, 823
BsaJI CCNNGG 4 cut(s) 10, 817, 955, 956
Bsc4I CCNNNNNNNGG 5 cut(s) 232, 568, 779, 878, 1211
Bse118I RCCGGY 1 cut(s) 1469
Bse1I ACTGG 3 cut(s) 75, 341, 1670
BseBI CCWGG 3 cut(s) 527, 957, 1535
BseDI CCNNGG 4 cut(s) 10, 817, 955, 956
BseGI GGATG 3 cut(s) 217, 1381, 1687
BseLI CCNNNNNNNGG 5 cut(s) 232, 568, 779, 878, 1211
BseNI ACTGG 3 cut(s) 75, 341, 1670
BseX3I CGGCCG 1 cut(s) 273
BseXI GCAGC 6 cut(s) 240, 307, 778, 781, 1204, 1405
BseYI CCCAGC 1 cut(s) 1283
BsgI GTGCAG 1 cut(s) 306
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 5 cut(s) 74, 275, 561, 612, 1623
BshNI GGYRCC 1 cut(s) 951
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 525
BsiHKCI CYCGRG 1 cut(s) 1655
BsiSI CCGG 1 cut(s) 1470
BslFI GGGAC 2 cut(s) 700, 810
BslI CCNNNNNNNGG 5 cut(s) 232, 568, 779, 878, 1211
BsmAI GTCTC 2 cut(s) 449, 1711
BsmFI GGGAC 2 cut(s) 700, 810
BsnI GGCC 5 cut(s) 74, 275, 561, 612, 1623
BsoBI CYCGRG 1 cut(s) 1655
Bsp1286I GDGCHC 1 cut(s) 525
Bsp143I GATC 3 cut(s) 22, 395, 1672
BspACI CCGC 3 cut(s) 932, 1421, 1583
BspANI GGCC 5 cut(s) 74, 275, 561, 612, 1623
BspHI TCATGA 2 cut(s) 597, 1492
BspLI GGNNCC 1 cut(s) 953
BspMI ACCTGC 1 cut(s) 946
BspOI GCTAGC 1 cut(s) 1235
BspPI GGATC 2 cut(s) 17, 1680
BspQI GCTCTTC 1 cut(s) 156
BspT107I GGYRCC 1 cut(s) 951
BsrFI RCCGGY 1 cut(s) 1469
BsrI ACTGG 3 cut(s) 75, 341, 1670
BssAI RCCGGY 1 cut(s) 1469
BssECI CCNNGG 4 cut(s) 10, 817, 955, 956
BssMI GATC 3 cut(s) 22, 395, 1672
BssNI GRCGYC 2 cut(s) 722, 823
BssT1I CCWWGG 1 cut(s) 10
Bst2UI CCWGG 3 cut(s) 527, 957, 1535
Bst4CI ACNGT 1 cut(s) 1411
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 2 cut(s) 722, 823
BstC8I GCNNGC 2 cut(s) 634, 1233
BstDEI CTNAG 1 cut(s) 1711
BstF5I GGATG 3 cut(s) 217, 1381, 1687
BstKTI GATC 3 cut(s) 25, 398, 1675
BstMAI GTCTC 2 cut(s) 449, 1711
BstMBI GATC 3 cut(s) 22, 395, 1672
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNI CCWGG 3 cut(s) 527, 957, 1535
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 3 cut(s) 525, 955, 1533
BstSFI CTRYAG 1 cut(s) 1224
BstV1I GCAGC 6 cut(s) 240, 307, 778, 781, 1204, 1405
BstX2I RGATCY 1 cut(s) 1672
BstXI CCANNNNNNTGG 1 cut(s) 1085
BstYI RGATCY 1 cut(s) 1672
BstZI CGGCCG 1 cut(s) 273
BsuRI GGCC 5 cut(s) 74, 275, 561, 612, 1623
BtsCI GGATG 3 cut(s) 217, 1381, 1687
BtsIMutI CAGTG 2 cut(s) 1067, 1753
BveI ACCTGC 1 cut(s) 946
Cac8I GCNNGC 2 cut(s) 634, 1233
CciI TCATGA 2 cut(s) 597, 1492
Cfr10I RCCGGY 1 cut(s) 1469
CseI GACGC 1 cut(s) 523
Csp6I GTAC 4 cut(s) 41, 952, 1113, 1477
CviAII CATG 7 cut(s) 290, 598, 836, 946, 1108, 1134, 1493
CviQI GTAC 4 cut(s) 41, 952, 1113, 1477
DdeI CTNAG 1 cut(s) 1711
DpnI GATC 3 cut(s) 24, 397, 1674
DpnII GATC 3 cut(s) 22, 395, 1672
EaeI YGGCCR 3 cut(s) 72, 273, 1621
EagI CGGCCG 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Ecl136II GAGCTC 1 cut(s) 523
EclXI CGGCCG 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 10
Eco147I AGGCCT 2 cut(s) 561, 612
Eco24I GRGCYC 1 cut(s) 525
Eco32I GATATC 1 cut(s) 1498
Eco52I CGGCCG 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 523
Eco88I CYCGRG 1 cut(s) 1655
EcoICRI GAGCTC 1 cut(s) 523
EcoRI GAATTC 1 cut(s) 907
EcoRII CCWGG 3 cut(s) 525, 955, 1533
EcoRV GATATC 1 cut(s) 1498
EcoT14I CCWWGG 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 525
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 7 cut(s) 293, 601, 839, 949, 1111, 1137, 1496
FalI AAGNNNNNCTT 2 cut(s) 736, 768
FaqI GGGAC 2 cut(s) 700, 810
FatI CATG 7 cut(s) 289, 597, 835, 945, 1107, 1133, 1492
FblI GTMKAC 1 cut(s) 1443
Fnu4HI GCNGC 8 cut(s) 254, 321, 767, 770, 932, 1218, 1419, 1422
FokI GGATG 3 cut(s) 224, 1388, 1694
FriOI GRGCYC 1 cut(s) 525
Fsp4HI GCNGC 8 cut(s) 254, 321, 767, 770, 932, 1218, 1419, 1422
FspBI CTAG 5 cut(s) 563, 618, 1232, 1428, 1697
GluI GCNGC 8 cut(s) 254, 321, 767, 770, 932, 1218, 1419, 1422
GsaI CCCAGC 1 cut(s) 1287
GsuI CTGGAG 1 cut(s) 509
HaeIII GGCC 5 cut(s) 74, 275, 561, 612, 1623
HapII CCGG 1 cut(s) 1470
HgaI GACGC 1 cut(s) 523
Hin1I GRCGYC 2 cut(s) 722, 823
Hin1II CATG 7 cut(s) 293, 601, 839, 949, 1111, 1137, 1496
HincII GTYRAC 1 cut(s) 1531
HindII GTYRAC 1 cut(s) 1531
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 9 cut(s) 542, 787, 1047, 1163, 1200, 1249, 1462, 1613, 1739
HpaII CCGG 1 cut(s) 1470
HphI GGTGA 4 cut(s) 836, 1171, 1317, 1443
Hpy166II GTNNAC 5 cut(s) 41, 1067, 1199, 1444, 1531
Hpy188I TCNGA 9 cut(s) 22, 85, 579, 700, 821, 881, 1008, 1158, 1461
Hpy8I GTNNAC 5 cut(s) 41, 1067, 1199, 1444, 1531
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 3 cut(s) 473, 602, 1535
HpyCH4III ACNGT 1 cut(s) 1411
HpyCH4IV ACGT 5 cut(s) 603, 627, 722, 823, 1446
HpyCH4V TGCA 5 cut(s) 323, 643, 674, 1522, 1577
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 1711
HpySE526I ACGT 5 cut(s) 603, 627, 722, 823, 1446
Hsp92I GRCGYC 2 cut(s) 722, 823
Hsp92II CATG 7 cut(s) 293, 601, 839, 949, 1111, 1137, 1496
KpnI GGTACC 1 cut(s) 955
Kzo9I GATC 3 cut(s) 22, 395, 1672
LguI GCTCTTC 1 cut(s) 156
LmnI GCTCC 2 cut(s) 493, 528
Lsp1109I GCAGC 6 cut(s) 240, 307, 778, 781, 1204, 1405
LweI GCATC 4 cut(s) 863, 918, 1366, 1672
MaeI CTAG 5 cut(s) 563, 618, 1232, 1428, 1697
MaeII ACGT 5 cut(s) 603, 627, 722, 823, 1446
MaeIII GTNAC 2 cut(s) 707, 1349
MalI GATC 3 cut(s) 24, 397, 1674
MboI GATC 3 cut(s) 22, 395, 1672
MboII GAAGA 6 cut(s) 83, 143, 254, 1550, 1661, 1738
MfeI CAATTG 1 cut(s) 1027
MflI RGATCY 1 cut(s) 1672
MhlI GDGCHC 1 cut(s) 525
MlsI TGGCCA 1 cut(s) 74
MluNI TGGCCA 1 cut(s) 74
MlyI GAGTC 3 cut(s) 1041, 1194, 1733
MmeI TCCRAC 3 cut(s) 991, 1641, 1650
MnlI CCTC 9 cut(s) 107, 188, 415, 586, 827, 882, 1366, 1711, 1757
Mox20I TGGCCA 1 cut(s) 74
MroXI GAANNNNTTC 2 cut(s) 90, 546
MscI TGGCCA 1 cut(s) 74
MseI TTAA 9 cut(s) 134, 249, 260, 299, 662, 990, 1242, 1572, 1632
MslI CAYNNNNRTG 2 cut(s) 866, 1083
Msp20I TGGCCA 1 cut(s) 74
MspI CCGG 1 cut(s) 1470
MspR9I CCNGG 3 cut(s) 527, 957, 1535
MunI CAATTG 1 cut(s) 1027
MvaI CCWGG 3 cut(s) 527, 957, 1535
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeII GATC 3 cut(s) 22, 395, 1672
NheI GCTAGC 1 cut(s) 1231
NlaIII CATG 7 cut(s) 293, 601, 839, 949, 1111, 1137, 1496
NlaIV GGNNCC 1 cut(s) 953
NspI RCATGY 1 cut(s) 293
OliI CACNNNNGTG 1 cut(s) 866
PaeR7I CTCGAG 1 cut(s) 1655
PagI TCATGA 2 cut(s) 597, 1492
PasI CCCWGGG 1 cut(s) 956
PceI AGGCCT 2 cut(s) 561, 612
PciSI GCTCTTC 1 cut(s) 156
PcsI WCGNNNNNNNCGW 1 cut(s) 1653
PdmI GAANNNNTTC 2 cut(s) 90, 546
PfeI GAWTC 6 cut(s) 542, 787, 1163, 1249, 1462, 1613
PflMI CCANNNNNTGG 1 cut(s) 1211
PkrI GCNGC 8 cut(s) 255, 322, 768, 771, 933, 1219, 1420, 1423
PleI GAGTC 3 cut(s) 1041, 1194, 1733
PpsI GAGTC 3 cut(s) 1041, 1194, 1733
PshBI ATTAAT 2 cut(s) 134, 1572
Psp124BI GAGCTC 1 cut(s) 525
Psp1406I AACGTT 1 cut(s) 603
Psp6I CCWGG 3 cut(s) 525, 955, 1533
PspFI CCCAGC 1 cut(s) 1283
PspGI CCWGG 3 cut(s) 525, 955, 1533
PspN4I GGNNCC 1 cut(s) 953
PspXI VCTCGAGB 1 cut(s) 1655
PsuI RGATCY 1 cut(s) 1672
RsaI GTAC 4 cut(s) 42, 953, 1114, 1478
RsaNI GTAC 4 cut(s) 41, 952, 1113, 1477
RseI CAYNNNNRTG 2 cut(s) 866, 1083
SacI GAGCTC 1 cut(s) 525
SapI GCTCTTC 1 cut(s) 156
SaqAI TTAA 9 cut(s) 134, 249, 260, 299, 662, 990, 1242, 1572, 1632
SatI GCNGC 8 cut(s) 254, 321, 767, 770, 932, 1218, 1419, 1422
Sau3AI GATC 3 cut(s) 22, 395, 1672
ScaI AGTACT 1 cut(s) 1478
SchI GAGTC 3 cut(s) 1041, 1194, 1733
ScrFI CCNGG 3 cut(s) 527, 957, 1535
SduI GDGCHC 1 cut(s) 525
SfaNI GCATC 4 cut(s) 863, 918, 1366, 1672
SfcI CTRYAG 1 cut(s) 1224
Sfr274I CTCGAG 1 cut(s) 1655
SlaI CTCGAG 1 cut(s) 1655
SmiMI CAYNNNNRTG 2 cut(s) 866, 1083
SmlI CTYRAG 3 cut(s) 308, 590, 1655
SmoI CTYRAG 3 cut(s) 308, 590, 1655
SseBI AGGCCT 2 cut(s) 561, 612
SsiI CCGC 3 cut(s) 932, 1421, 1583
SspMI CTAG 5 cut(s) 563, 618, 1232, 1428, 1697
SstI GAGCTC 1 cut(s) 525
StuI AGGCCT 2 cut(s) 561, 612
StyD4I CCNGG 3 cut(s) 525, 955, 1533
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 1 cut(s) 1411
TaiI ACGT 5 cut(s) 606, 630, 725, 826, 1449
TaqI TCGA 6 cut(s) 238, 429, 532, 755, 1247, 1656
TatI WGTACW 3 cut(s) 40, 1112, 1476
TauI GCSGC 2 cut(s) 934, 1424
TfiI GAWTC 6 cut(s) 542, 787, 1163, 1249, 1462, 1613
Tru1I TTAA 9 cut(s) 134, 249, 260, 299, 662, 990, 1242, 1572, 1632
Tru9I TTAA 9 cut(s) 134, 249, 260, 299, 662, 990, 1242, 1572, 1632
TscAI CASTG 1 cut(s) 1074
TseI GCWGC 6 cut(s) 253, 320, 766, 769, 1217, 1418
TspGWI ACGGA 1 cut(s) 856
TspRI CASTG 1 cut(s) 1074
Van91I CCANNNNNTGG 1 cut(s) 1211
VspI ATTAAT 2 cut(s) 134, 1572
XapI RAATTY 8 cut(s) 86, 245, 374, 408, 907, 1336, 1358, 1627
XbaI TCTAGA 1 cut(s) 1696
XceI RCATGY 1 cut(s) 293
XhoI CTCGAG 1 cut(s) 1655
XmiI GTMKAC 1 cut(s) 1443
XmnI GAANNNNTTC 2 cut(s) 90, 546
XspI CTAG 5 cut(s) 563, 618, 1232, 1428, 1697
ZraI GACGTC 2 cut(s) 723, 824
ZrmI AGTACT 1 cut(s) 1478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.