MD02G1288500.v1.1

f-box protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
34491722 .. 34498012
6291 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1288500.v1.1.491

Sequence Viewer

Length: 3936 bp
ATGGAGGACGATACGTCGTCCTTCTCCGACCACAAGCTCTGCGGCTTCCTCTACGCCGTTCTCACTGTCACTTCCTCCCCGGACCACCGCCAAATCCCACCCTTCGGCACCCGCTTCCGAATTTCCCAATGCGACGTCAATTTCACTTCCCAAAACGGCGTCGTCCTTACCCCCGTTGACCCAGTTCCCAGCGCCGATGTCTCGGCTGAGGAGCCCAAGCAATGCGAGGTTCCGGTGCGGGAATTTGGGAGGAAGAGGAAGGTCCCGGTGGTGGCTGGGAGGAAGATTGGGATGAGGAGGAGCAGGAGGAGCATAGGGCTGGTGCACGGGAGCATTAGCGTGGTGCACCAGCTCCACGCATTGGTTGTGAACAAGTGCTTGAGGATCGATGCTCGATTGGTTCGGGTAGAGGCCGGAGACAGTGGAGAGGTCAGGGCTGTGGTGCTGGTCGATGTCTATCTCCCTATTGCAATGCTGGCTGGTTGGCAGTTCCCGAGATCAGGCTCCGTTGCCGGAGCTCTGTTTCGACATTTGAGTTCTGACTGGGGAGAGAGAAGTGCAATGCTCATCAATGGAGATTATCTTGAAAGTACTCTAGGAGCAGACAGAAGCATATGGAATCTTTCCGATTGTCATGTTTTTGGTTGCAAGCTGCATCATGACTTCACTGATTCTTCGAAGAAAAGGCTTTTTGAGCTTCATGAAATTTTTAAGAGCTTACCTTGTGTTGCAAAGACAGGAAAACCTGTTTCTTCTAGAATACAACCATGTGACAACTCTGGCAGCTCTGGTATTTGGGAGATATCTGATGACATTTTACTTAATATTCTAGCTGCACTTAACCCAAGTGACCTCGTTATGGTGTCTGCAACCTGCCGCCATCTTAGACTGTTAGCCATCTCAATCATGCCATGCATGAAACTTAAACTTTTTCCTCATCAGCAGGCAGCAGTAGAGTGGATGCTACAGCGTGAGAGAAATGCTGACATCCTGCCACATCCTTTATACTTGTCTTTCTCAACTGAAGAGGGATTTTCTTTCTACATAAATACCATCTCTGGGAAAATAGTCACTGGGGTAGCTCCCACTGTGAATGATTTTCGTGGGGGAATGTTCTGTGATGAGCCTGGATTAGGCAAGACTATAACTGCTCTTTCCCTTATTCTAAAGACACAAGGAACACTGGCAAATGCACCAGACGGGGTACGTGTTAATTGGTGTACACATAATGGAGAGAAAAGAAGTGGTTATTATGAGCTTAATGGTGATTATGTTGCTGACAGGAGAATGCTCATGGAAAAGAGAGACACTGGTCAGAATTCTCAAAATTATATTTGGGATTCCAACTACCAACGATCCAAAAGAGCTAGGCTAGTTCTTCATGATGAGAAAATGACAGGATTTATTAATTCATGTCCTGGACCTTCTGGTAAAGGAATGGAAACACCAGCAGCTGCATATTCTGATTTAACAGTGGGTGGGGTCCGATGCACCGGGAGCTTGAGCTGCATCAGTAAAAATCTTTTTCCCACATTTGAAGGTGCATCTAACGAGGCGAGCAAAAGCTCTAGTAAAAGGAGGCCTATGAAGGTTAATGCAGATAAGTATGATTATAACGACTCCTGGGTTCAGTGTGATGCTTGCCACAAGTGGCGGAAGCTTCCAGCTAGTATTGCTGATGCTAGTGAAGCATGGTTTTGTAGCATGAATGCTGATCCTTTCTACCAGAGTTGTAGTGTTCCTGAAGAAGCCTGGGATAATTGTCTTCAAATAACACATTTACTGGGATTTTGCACAAAAGGAACCTTTGAAGGAGAGGAACAAAACGTTCGTTTCTTCATCAGTGTGCTTAAAGAGCATTATCCCTTGATAAATTCCATAACAAAGAAATCCCTAATTTGGTTGACTAATCTTTCTTCTGACAAGCTTTCAGCAATGGAGACAAATGGTTTGCGAAGTCCTTTCATAAGCACTTGCACGGCTCCTGGTGAAAATGCTCATGGGTTTCAAAAAATATTTCAAGCATTTGGTCTCAAAAGAAGACTAGAAAAGGGTGTTAGTAGGTGGTTTTACCCACGAAATCTTGACAATATGAGTTTTGACGTTGCTGCTCTCAGAATTGCTCTTTGTTCACCATTGGATTCAGTCAGGCTGTATCTTTCTAGGGCAACCCTAATTGTTGTTCCATCAAATTTAATTGATCATTGGAACACTCAAATCCAGAAGCATGTAAGGCCTGGTCAGCTACGGGTTTACATTTGGAATGATCATAGGAAGCCTAAGGCACACAGTCTGGCTTGGGACTATGATGTTGTCATAACCACATTCAACCGTTTAAGTGCAGAGTGGGGTCCTCGGAAGAAAAGTGCGATGATGCAAGTGCATTGGCTTAGAGTCATGCTAGATGAGGGGCACACCCTTGGCTCAAGTCTTAGCTTGACCAACAAAATGCAGATGGCAGTTTCATTGATGGCTTCAAACCGTTGGATATTGACTGGAACTCCAACTCCTAATACACCCAACACAAAGATGGAAGAAGGACGATCGCGTTTGTTGCATTTACTGCATAGGTGTATGATTAGTGCAAGGAAGGTAGATTTGCAGGCTATTCCACCCTGCATCAAGAAAGTTACTTATCTTGATTTTACAGAGGAACATGCAAGAAGTTACAACGAATTGGTAGTTACAGTGCAGCGCAATATATTAATGGCTGACTGGAATGATCCTTCTCATGTTGAGAGTCTTTTGAATCCAAAGCAGTGGAAGTCTAGAAGTGCAACTATTGGAAATGTCAGGCTATCGTGCTGCGTGGCTGGGCATATAAAAGTAACAGAAGCTGGTGAAGATATTCAGGAAACAATGGATATTTTAGTTCAGAATGGTCTAGATCCCGTGTCGGAGGAGTATGCTTATATAAAACATTACCTCGTTTACGGTGGCAACTGTGTTAGGTGCAAGGAATGGTGTCGGTTACCAGTCATTACACCATGCAGGCATCTTTTGTGCCTCGATTGTGTTGCTTTGGACAGTGAACGGTGTACGTTTCCTGGTTGTGGCAATTTATATGAGATGCAAACTCCTGATGAATTAGCCCGACCAGAAAATCCCAATCCTAAATGGCCTGTTCCCAAAGATCTTATTGAGCTACAACCCTCATATAAACAGGATAACTGGGATCCTGATTGGCAATCAACATCTAGCAGTAAAGTCGCCTATATTATAGAGAAATTGAAAGCATTGCAGGAAGCTAACAGCAAAGTTCATTGCCCTCCAGATGGCAACAATAATTCCTTGCACACTGAAAATTTACTGTCTGAGATAACCGATTCAAAAGGATCGATGCAAGTCCATGACTTTAAAATGAGCACCAAGACCCATGATACAAACTTGGAAAAAGTTTTGGTATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGGCGATTGCTGGTATTAATTATGCTGGCATGTATAGTCCAATGCACGCTAGTAACAAGATGAAGTCCTTGGCCAGGTTCCAGCATGATCCAAGTTACACAGTTCTTTTGATGGATGGAAGTGCTGCATTGGGTCTTGATTTGAGCTTTGTGACCCATGTATTTTTAATGGAACCAATATGGGACAGGAGCATGGAGGAACAAGTTGTTAGTCGTGCCCATCGGATGGGTGCTACTCGTCCAATACATGTGGAAACTCTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTGGAATTCTTACAGGATGCTGATGAGTGCAGAAGATTTTTAAAGGAAGAGGCTGGAAAATCTGAGCCTACAGGGGCACGAACTCAGCGTTCATTACACGATTTTGCTGAGAGCAATTATCTGTCCCACCTTAGCTTTGTGCGGACAAATTCTAGGACGAATGTGACCATCTTGTACATGCCATCAATGATATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

1312

Amino Acids

147.6

Weight (kDa)

7.8

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 313 - 839 3.9e-47 SNF2-related domain
zf-CW PF07496 542 - 583 2.7e-16 CW-type Zinc Finger
SNF2-rel_dom PF00176 843 - 908 5.1e-06 SNF2-related domain
Helicase_C PF00271 1129 - 1226 1.4e-11 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1614
AatII GACGTC 1 cut(s) 138
Acc36I ACCTGC 1 cut(s) 881
AccB1I GGYRCC 1 cut(s) 107
AccB7I CCANNNNNTGG 2 cut(s) 361, 3673
AccII CGCG 1 cut(s) 2548
AciI CCGC 7 cut(s) 42, 88, 112, 238, 877, 1654, 3880
AclI AACGTT 1 cut(s) 1827
AclWI GGATC 9 cut(s) 392, 1350, 1709, 2717, 2882, 3170, 3183, 3343, 3530
AcoI YGGCCR 1 cut(s) 3519
AcsI RAATTY 9 cut(s) 120, 242, 705, 1318, 1873, 2191, 3304, 3743, 3886
AcuI CTGAAG 2 cut(s) 1044, 1764
AcyI GRCGYC 2 cut(s) 135, 159
AfaI GTAC 6 cut(s) 592, 1206, 1222, 3040, 3721, 3914
AflIII ACRYGT 3 cut(s) 1207, 3430, 3694
AhdI GACNNNNNGTC 1 cut(s) 13
AjnI CCWGG 8 cut(s) 1126, 1417, 1622, 1751, 1984, 2236, 3046, 3521
AloI GAACNNNNNNTCC 2 cut(s) 2491, 2523
Alw21I GWGCWC 4 cut(s) 327, 348, 520, 3368
Alw26I GTCTC 5 cut(s) 205, 411, 1299, 1934, 2036
Alw44I GTGCAC 2 cut(s) 323, 344
AlwI GGATC 9 cut(s) 392, 1350, 1709, 2717, 2882, 3170, 3183, 3343, 3530
AlwNI CAGNNNCTG 2 cut(s) 1454, 2837
Ama87I CYCGRG 1 cut(s) 493
AoxI GGCC 5 cut(s) 411, 1580, 2234, 3119, 3519
ApaLI GTGCAC 2 cut(s) 323, 344
ApoI RAATTY 9 cut(s) 120, 242, 705, 1318, 1873, 2191, 3304, 3743, 3886
ArsI GACNNNNNNTTYG 2 cut(s) 1933, 1965
AseI ATTAAT 3 cut(s) 1407, 2705, 3465
Asp700I GAANNNNTTC 1 cut(s) 2847
AspLEI GCGC 2 cut(s) 194, 2697
AspS9I GGNCC 5 cut(s) 82, 262, 1421, 1483, 2351
AsuC2I CCSGG 3 cut(s) 80, 266, 1495
AsuHPI GGTGA 4 cut(s) 1277, 2000, 2124, 2852
AsuII TTCGAA 1 cut(s) 677
AvaI CYCGRG 1 cut(s) 493
AvaII GGWCC 5 cut(s) 82, 262, 1421, 1483, 2351
AxyI CCTNAGG 1 cut(s) 2280
BaeGI GKGCMC 5 cut(s) 327, 348, 2415, 3667, 3817
BalI TGGCCA 1 cut(s) 3521
BamHI GGATCC 1 cut(s) 3175
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 2 cut(s) 216, 520
BbsI GAAGAC 2 cut(s) 1757, 2047
Bbv12I GWGCWC 4 cut(s) 327, 348, 520, 3368
BbvCI CCTCAGC 1 cut(s) 207
BceAI ACGGC 3 cut(s) 41, 172, 1995
BcgI CGANNNNNNTGC 4 cut(s) 2999, 3033, 3190, 3224
BciT130I CCWGG 8 cut(s) 1128, 1419, 1624, 1753, 1986, 2238, 3048, 3523
BclI TGATCA 2 cut(s) 2200, 2266
BcnI CCSGG 3 cut(s) 80, 266, 1495
BcoDI GTCTC 5 cut(s) 205, 411, 1299, 1934, 2036
BfmI CTRYAG 2 cut(s) 965, 3807
BfoI RGCGCY 1 cut(s) 195
BfuAI ACCTGC 1 cut(s) 881
BglII AGATCT 1 cut(s) 3133
BmcAI AGTACT 1 cut(s) 592
Bme18I GGWCC 5 cut(s) 82, 262, 1421, 1483, 2351
BmeRI GACNNNNNGTC 1 cut(s) 13
BmeT110I CYCGRG 1 cut(s) 493
BmgT120I GGNCC 5 cut(s) 82, 262, 1421, 1483, 2351
BmrI ACTGGG 5 cut(s) 176, 553, 1083, 1793, 3181
BmuI ACTGGG 5 cut(s) 176, 553, 1083, 1793, 3181
BoxI GACNNNNGTC 1 cut(s) 1311
BpiI GAAGAC 2 cut(s) 1757, 2047
BpmI CTGGAG 1 cut(s) 3255
Bpu10I CCTNAGC 2 cut(s) 207, 3869
Bpu14I TTCGAA 1 cut(s) 677
BpuEI CTTGAG 4 cut(s) 400, 1522, 2410, 3440
BpuMI CCSGG 3 cut(s) 80, 266, 1495
Bsa29I ATCGAT 2 cut(s) 387, 3338
BsaAI YACGTR 1 cut(s) 1208
BsaBI GATNNNNATC 1 cut(s) 456
BsaHI GRCGYC 2 cut(s) 135, 159
BsaI GGTCTC 1 cut(s) 2036
BsaJI CCNNGG 6 cut(s) 78, 1623, 1752, 2354, 2419, 3516
BsaWI WCCGGW 1 cut(s) 232
BsaXI ACNNNNNCTCC 4 cut(s) 2485, 2491, 2515, 2521
Bse21I CCTNAGG 1 cut(s) 2280
Bse3DI GCAATG 7 cut(s) 227, 477, 567, 1941, 3236, 3262, 3717
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 8 cut(s) 1128, 1419, 1624, 1753, 1986, 2238, 3048, 3523
BseCI ATCGAT 2 cut(s) 387, 3338
BseDI CCNNGG 6 cut(s) 78, 1623, 1752, 2354, 2419, 3516
BseGI GGATG 7 cut(s) 297, 966, 987, 997, 3568, 3678, 3760
BseJI GATNNNNATC 1 cut(s) 456
BseMI GCAATG 7 cut(s) 227, 477, 567, 1941, 3236, 3262, 3717
BseMII CTCAG 6 cut(s) 198, 2128, 3306, 3792, 3836, 3837
BseRI GAGGAG 5 cut(s) 224, 310, 313, 322, 2915
BseSI GKGCMC 5 cut(s) 327, 348, 2415, 3667, 3817
BseYI CCCAGC 3 cut(s) 188, 275, 2813
BsgI GTGCAG 4 cut(s) 819, 2361, 2711, 3787
Bsh1236I CGCG 1 cut(s) 2548
Bsh1285I CGRYCG 1 cut(s) 2546
BshFI GGCC 5 cut(s) 413, 1582, 2236, 3121, 3521
BshNI GGYRCC 1 cut(s) 107
BshVI ATCGAT 2 cut(s) 387, 3338
BsiEI CGRYCG 1 cut(s) 2546
BsiHKAI GWGCWC 4 cut(s) 327, 348, 520, 3368
BsiHKCI CYCGRG 1 cut(s) 493
BsiSI CCGG 6 cut(s) 80, 233, 266, 414, 513, 1494
BslFI GGGAC 4 cut(s) 248, 2315, 3644, 3847
BsmAI GTCTC 5 cut(s) 205, 411, 1299, 1934, 2036
BsmFI GGGAC 4 cut(s) 248, 2315, 3644, 3847
BsmI GAATGC 2 cut(s) 1293, 1714
BsnI GGCC 5 cut(s) 413, 1582, 2236, 3121, 3521
Bso31I GGTCTC 1 cut(s) 2036
BsoBI CYCGRG 1 cut(s) 493
Bsp119I TTCGAA 1 cut(s) 677
Bsp1286I GDGCHC 8 cut(s) 216, 327, 348, 520, 2415, 3368, 3667, 3817
Bsp1407I TGTACA 2 cut(s) 1220, 3912
BspACI CCGC 7 cut(s) 42, 88, 112, 238, 877, 1654, 3880
BspANI GGCC 5 cut(s) 413, 1582, 2236, 3121, 3521
BspCNI CTCAG 6 cut(s) 199, 2127, 3307, 3793, 3835, 3838
BspDI ATCGAT 2 cut(s) 387, 3338
BspFNI CGCG 1 cut(s) 2548
BspHI TCATGA 3 cut(s) 658, 700, 1381
BspMI ACCTGC 1 cut(s) 881
BspPI GGATC 9 cut(s) 392, 1350, 1709, 2717, 2882, 3170, 3183, 3343, 3530
BspQI GCTCTTC 1 cut(s) 3723
BspT104I TTCGAA 1 cut(s) 677
BspT107I GGYRCC 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 2036
BsrDI GCAATG 7 cut(s) 227, 477, 567, 1941, 3236, 3262, 3717
BsrGI TGTACA 2 cut(s) 1220, 3912
BssECI CCNNGG 6 cut(s) 78, 1623, 1752, 2354, 2419, 3516
BssNI GRCGYC 2 cut(s) 135, 159
BssT1I CCWWGG 2 cut(s) 2419, 3516
Bst2UI CCWGG 8 cut(s) 1128, 1419, 1624, 1753, 1986, 2238, 3048, 3523
Bst6I CTCTTC 4 cut(s) 248, 1020, 3723, 3780
BstACI GRCGYC 2 cut(s) 135, 159
BstAPI GCANNNNNTGC 1 cut(s) 2563
BstAUI TGTACA 2 cut(s) 1220, 3912
BstBAI YACGTR 1 cut(s) 1208
BstBI TTCGAA 1 cut(s) 677
BstC8I GCNNGC 9 cut(s) 477, 650, 945, 1558, 1642, 2604, 2993, 3475, 3495
BstEII GGTNACC 1 cut(s) 2970
BstENI CCTNNNNNAGG 2 cut(s) 1131, 3520
BstF5I GGATG 7 cut(s) 297, 966, 987, 997, 3568, 3678, 3760
BstFNI CGCG 1 cut(s) 2548
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 2 cut(s) 194, 2697
BstMAI GTCTC 5 cut(s) 205, 411, 1299, 1934, 2036
BstMCI CGRYCG 1 cut(s) 2546
BstNI CCWGG 8 cut(s) 1128, 1419, 1624, 1753, 1986, 2238, 3048, 3523
BstNSI RCATGY 6 cut(s) 2231, 2660, 3434, 3481, 3698, 3919
BstPAI GACNNNNGTC 1 cut(s) 1311
BstPI GGTNACC 1 cut(s) 2970
BstSFI CTRYAG 2 cut(s) 965, 3807
BstSLI GKGCMC 5 cut(s) 327, 348, 2415, 3667, 3817
BstUI CGCG 1 cut(s) 2548
BstV2I GAAGAC 2 cut(s) 1757, 2047
BstX2I RGATCY 3 cut(s) 2887, 3133, 3175
BstXI CCANNNNNNTGG 1 cut(s) 2760
BstYI RGATCY 3 cut(s) 2887, 3133, 3175
Bsu15I ATCGAT 2 cut(s) 387, 3338
Bsu36I CCTNAGG 1 cut(s) 2280
BsuRI GGCC 5 cut(s) 413, 1582, 2236, 3121, 3521
BsuTUI ATCGAT 2 cut(s) 387, 3338
BtgZI GCGATG 1 cut(s) 2384
BtsCI GGATG 7 cut(s) 297, 966, 987, 997, 3568, 3678, 3760
BtsI GCAGTG 1 cut(s) 2765
BveI ACCTGC 1 cut(s) 881
Cac8I GCNNGC 9 cut(s) 477, 650, 945, 1558, 1642, 2604, 2993, 3475, 3495
CaiI CAGNNNCTG 2 cut(s) 1454, 2837
CciI TCATGA 3 cut(s) 658, 700, 1381
CfoI GCGC 2 cut(s) 194, 2697
Cfr13I GGNCC 5 cut(s) 82, 262, 1421, 1483, 2351
ClaI ATCGAT 2 cut(s) 387, 3338
CseI GACGC 1 cut(s) 148
Csp6I GTAC 6 cut(s) 591, 1205, 1221, 3039, 3720, 3913
CspCI CAANNNNNGTGG 2 cut(s) 3678, 3713
CviQI GTAC 6 cut(s) 591, 1205, 1221, 3039, 3720, 3913
DraI TTTAAA 2 cut(s) 3358, 3780
DriI GACNNNNNGTC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 3519
Eam1104I CTCTTC 4 cut(s) 248, 1020, 3723, 3780
Eam1105I GACNNNNNGTC 1 cut(s) 13
EarI CTCTTC 4 cut(s) 248, 1020, 3723, 3780
EciI GGCGGA 1 cut(s) 1669
Ecl136II GAGCTC 1 cut(s) 518
Eco130I CCWWGG 2 cut(s) 2419, 3516
Eco147I AGGCCT 2 cut(s) 1582, 2236
Eco24I GRGCYC 2 cut(s) 216, 520
Eco31I GGTCTC 1 cut(s) 2036
Eco32I GATATC 1 cut(s) 804
Eco47I GGWCC 5 cut(s) 82, 262, 1421, 1483, 2351
Eco53kI GAGCTC 1 cut(s) 518
Eco57I CTGAAG 2 cut(s) 1044, 1764
Eco81I CCTNAGG 1 cut(s) 2280
Eco88I CYCGRG 1 cut(s) 493
Eco91I GGTNACC 1 cut(s) 2970
EcoICRI GAGCTC 1 cut(s) 518
EcoNI CCTNNNNNAGG 2 cut(s) 1131, 3520
EcoO109I RGGNCCY 2 cut(s) 262, 2351
EcoO65I GGTNACC 1 cut(s) 2970
EcoRI GAATTC 2 cut(s) 1318, 3743
EcoRII CCWGG 8 cut(s) 1126, 1417, 1622, 1751, 1984, 2236, 3046, 3521
EcoRV GATATC 1 cut(s) 804
EcoT14I CCWWGG 2 cut(s) 2419, 3516
EcoT22I ATGCAT 1 cut(s) 917
EcoT38I GRGCYC 2 cut(s) 216, 520
ErhI CCWWGG 2 cut(s) 2419, 3516
FaqI GGGAC 4 cut(s) 248, 2315, 3644, 3847
FauI CCCGC 2 cut(s) 119, 231
FauNDI CATATG 1 cut(s) 614
FbaI TGATCA 2 cut(s) 2200, 2266
FokI GGATG 7 cut(s) 304, 973, 974, 984, 3575, 3685, 3767
FriOI GRGCYC 2 cut(s) 216, 520
GlaI GCGC 2 cut(s) 193, 2696
GsaI CCCAGC 3 cut(s) 192, 279, 2817
GsuI CTGGAG 1 cut(s) 3255
HaeII RGCGCY 1 cut(s) 195
HaeIII GGCC 5 cut(s) 413, 1582, 2236, 3121, 3521
HapII CCGG 6 cut(s) 80, 233, 266, 414, 513, 1494
HgaI GACGC 1 cut(s) 148
HhaI GCGC 2 cut(s) 194, 2697
Hin1I GRCGYC 2 cut(s) 135, 159
Hin6I GCGC 2 cut(s) 192, 2695
HinP1I GCGC 2 cut(s) 192, 2695
HincII GTYRAC 2 cut(s) 178, 1905
HindII GTYRAC 2 cut(s) 178, 1905
HindIII AAGCTT 2 cut(s) 1658, 1925
HinfI GANTC 9 cut(s) 619, 671, 1340, 1619, 2141, 2394, 2740, 2749, 3326
HpaII CCGG 6 cut(s) 80, 233, 266, 414, 513, 1494
HphI GGTGA 4 cut(s) 1277, 2000, 2124, 2852
Hpy99I CGWCG 3 cut(s) 19, 137, 164
HpyCH4IV ACGT 6 cut(s) 14, 135, 1207, 1827, 2103, 3041
HpySE526I ACGT 6 cut(s) 14, 135, 1207, 1827, 2103, 3041
Hsp92I GRCGYC 2 cut(s) 135, 159
HspAI GCGC 2 cut(s) 192, 2695
Ksp22I TGATCA 2 cut(s) 2200, 2266
LguI GCTCTTC 1 cut(s) 3723
MaeII ACGT 6 cut(s) 14, 135, 1207, 1827, 2103, 3041
MfeI CAATTG 1 cut(s) 3723
MflI RGATCY 3 cut(s) 2887, 3133, 3175
MhlI GDGCHC 8 cut(s) 216, 327, 348, 520, 2415, 3368, 3667, 3817
MlsI TGGCCA 1 cut(s) 3521
MluNI TGGCCA 1 cut(s) 3521
MlyI GAGTC 3 cut(s) 1613, 2403, 2749
MmeI TCCRAC 5 cut(s) 51, 1368, 2465, 2528, 2877
Mox20I TGGCCA 1 cut(s) 3521
Mph1103I ATGCAT 1 cut(s) 917
MroXI GAANNNNTTC 1 cut(s) 2847
MscI TGGCCA 1 cut(s) 3521
MslI CAYNNNNRTG 4 cut(s) 338, 1844, 2528, 3429
Msp20I TGGCCA 1 cut(s) 3521
MspA1I CMGCKG 1 cut(s) 1454
MspI CCGG 6 cut(s) 80, 233, 266, 414, 513, 1494
MunI CAATTG 1 cut(s) 3723
Mva1269I GAATGC 2 cut(s) 1293, 1714
MvaI CCWGG 8 cut(s) 1128, 1419, 1624, 1753, 1986, 2238, 3048, 3523
MvnI CGCG 1 cut(s) 2548
NciI CCSGG 3 cut(s) 80, 266, 1495
NdeI CATATG 1 cut(s) 614
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 6 cut(s) 67, 770, 848, 1069, 3598, 3901
NsiI ATGCAT 1 cut(s) 917
NspI RCATGY 6 cut(s) 2231, 2660, 3434, 3481, 3698, 3919
NspV TTCGAA 1 cut(s) 677
PagI TCATGA 3 cut(s) 658, 700, 1381
PceI AGGCCT 2 cut(s) 1582, 2236
PciI ACATGT 2 cut(s) 3430, 3694
PciSI GCTCTTC 1 cut(s) 3723
PcsI WCGNNNNNNNCGW 1 cut(s) 3823
PctI GAATGC 2 cut(s) 1293, 1714
PdmI GAANNNNTTC 1 cut(s) 2847
PfeI GAWTC 6 cut(s) 619, 671, 1340, 2141, 2749, 3326
PflMI CCANNNNNTGG 2 cut(s) 361, 3673
PfoI TCCNGGA 1 cut(s) 1417
Ple19I CGATCG 1 cut(s) 2546
PleI GAGTC 3 cut(s) 1613, 2402, 2748
PpsI GAGTC 3 cut(s) 1613, 2402, 2748
Ppu21I YACGTR 1 cut(s) 1208
PpuMI RGGWCCY 2 cut(s) 262, 2351
PscI ACATGT 2 cut(s) 3430, 3694
PshAI GACNNNNGTC 1 cut(s) 1311
PshBI ATTAAT 3 cut(s) 1407, 2705, 3465
PsiI TTATAA 1 cut(s) 1614
Psp124BI GAGCTC 1 cut(s) 520
Psp1406I AACGTT 1 cut(s) 1827
Psp5II RGGWCCY 2 cut(s) 262, 2351
Psp6I CCWGG 8 cut(s) 1126, 1417, 1622, 1751, 1984, 2236, 3046, 3521
PspEI GGTNACC 1 cut(s) 2970
PspFI CCCAGC 3 cut(s) 188, 275, 2813
PspGI CCWGG 8 cut(s) 1126, 1417, 1622, 1751, 1984, 2236, 3046, 3521
PspPI GGNCC 5 cut(s) 82, 262, 1421, 1483, 2351
PspPPI RGGWCCY 2 cut(s) 262, 2351
PstNI CAGNNNCTG 2 cut(s) 1454, 2837
PsuI RGATCY 3 cut(s) 2887, 3133, 3175
PvuI CGATCG 1 cut(s) 2546
PvuII CAGCTG 1 cut(s) 1454
RsaI GTAC 6 cut(s) 592, 1206, 1222, 3040, 3721, 3914
RsaNI GTAC 6 cut(s) 591, 1205, 1221, 3039, 3720, 3913
RseI CAYNNNNRTG 4 cut(s) 338, 1844, 2528, 3429
SacI GAGCTC 1 cut(s) 520
SapI GCTCTTC 1 cut(s) 3723
Sau96I GGNCC 5 cut(s) 82, 262, 1421, 1483, 2351
ScaI AGTACT 1 cut(s) 592
SchI GAGTC 3 cut(s) 1613, 2403, 2749
SduI GDGCHC 8 cut(s) 216, 327, 348, 520, 2415, 3368, 3667, 3817
SfcI CTRYAG 2 cut(s) 965, 3807
SfuI TTCGAA 1 cut(s) 677
SinI GGWCC 5 cut(s) 82, 262, 1421, 1483, 2351
SmiMI CAYNNNNRTG 4 cut(s) 338, 1844, 2528, 3429
SmlI CTYRAG 4 cut(s) 379, 1501, 2425, 3419
SmoI CTYRAG 4 cut(s) 379, 1501, 2425, 3419
SseBI AGGCCT 2 cut(s) 1582, 2236
SsiI CCGC 7 cut(s) 42, 88, 112, 238, 877, 1654, 3880
SspI AATATT 2 cut(s) 826, 2016
SstI GAGCTC 1 cut(s) 520
StuI AGGCCT 2 cut(s) 1582, 2236
StyI CCWWGG 2 cut(s) 2419, 3516
TaiI ACGT 6 cut(s) 17, 138, 1210, 1830, 2106, 3044
TaqI TCGA 7 cut(s) 387, 394, 450, 526, 677, 3009, 3338
TatI WGTACW 3 cut(s) 590, 1220, 3912
TauI GCSGC 2 cut(s) 45, 879
TfiI GAWTC 6 cut(s) 619, 671, 1340, 2141, 2749, 3326
TseFI GTSAC 6 cut(s) 67, 770, 848, 1069, 3598, 3901
Tsp45I GTSAC 6 cut(s) 67, 770, 848, 1069, 3598, 3901
TspGWI ACGGA 1 cut(s) 496
Van91I CCANNNNNTGG 2 cut(s) 361, 3673
VneI GTGCAC 2 cut(s) 323, 344
VpaK11BI GGWCC 5 cut(s) 82, 262, 1421, 1483, 2351
VspI ATTAAT 3 cut(s) 1407, 2705, 3465
XagI CCTNNNNNAGG 2 cut(s) 1131, 3520
XapI RAATTY 9 cut(s) 120, 242, 705, 1318, 1873, 2191, 3304, 3743, 3886
XbaI TCTAGA 3 cut(s) 755, 2768, 2884
XceI RCATGY 6 cut(s) 2231, 2660, 3434, 3481, 3698, 3919
XcmI CCANNNNNNNNNTGG 1 cut(s) 2527
XmnI GAANNNNTTC 1 cut(s) 2847
ZraI GACGTC 1 cut(s) 136
ZrmI AGTACT 1 cut(s) 592
Zsp2I ATGCAT 1 cut(s) 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.