f-box protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G54460 AT3G54460 |
| fragaria_vesca | FvH4_7g02950 FvH4_7g02950 FvH4_7g02950 |
| malus_domestica | MD02G1288500.v1.1 MD07G1038300.v1.1 |
| prunus_persica | Prupe.2G034500_v2.0.a1 Prupe.2G034500_v2.0.a1 |
| pyrus_communis | pycom07g02660 |
| rosa_chinensis | RchiOBHm_Chr1g0323901 |
| rosa_laevigata | RLG00000030243 RLG00000031960 |
| rosa_multiflora | Rmu_sc0001449.1_g000002 Rmu_sc0012343.1_g000008 |
| rosa_roxburghii | Rroxscaffold_4G00326120 |
| rosa_rugosa | Rorug01G0040500.1 |
| rosa_samantha | Rh1CG059700 Rh1CG060300 Rh1DG063700 Rh1DG064300 |
| rosa_wichuraiana | Rw0G011390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2757 |
| AatII | GACGTC | 3 cut(s) | 23, 135, 408 |
| Acc36I | ACCTGC | 1 cut(s) | 949 |
| AccB1I | GGYRCC | 1 cut(s) | 181 |
| AccI | GTMKAC | 1 cut(s) | 2971 |
| AccII | CGCG | 3 cut(s) | 112, 120, 1676 |
| AccIII | TCCGGA | 1 cut(s) | 3223 |
| AclI | AACGTT | 1 cut(s) | 3874 |
| AclWI | GGATC | 3 cut(s) | 2804, 3215, 3228 |
| AcoI | YGGCCR | 2 cut(s) | 2898, 3182 |
| AcsI | RAATTY | 7 cut(s) | 720, 1404, 1696, 1861, 2176, 2852, 3436 |
| AcuI | CTGAAG | 3 cut(s) | 1059, 1202, 1752 |
| AcvI | CACGTG | 1 cut(s) | 3748 |
| AcyI | GRCGYC | 5 cut(s) | 20, 132, 156, 366, 405 |
| AfaI | GTAC | 7 cut(s) | 551, 1221, 1237, 2863, 3127, 3744, 3927 |
| AflII | CTTAAG | 2 cut(s) | 1504, 1838 |
| AflIII | ACRYGT | 1 cut(s) | 3745 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1915, 1935 |
| AjnI | CCWGG | 7 cut(s) | 562, 1141, 1382, 1408, 1607, 2221, 3133 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2476, 2508 |
| Alw21I | GWGCWC | 4 cut(s) | 294, 472, 2356, 3718 |
| Alw26I | GTCTC | 8 cut(s) | 743, 919, 1242, 1922, 2021, 2765, 3259, 3638 |
| Alw44I | GTGCAC | 2 cut(s) | 290, 2352 |
| AlwI | GGATC | 3 cut(s) | 2804, 3215, 3228 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1457, 2924 |
| Aor13HI | TCCGGA | 1 cut(s) | 3223 |
| AoxI | GGCC | 6 cut(s) | 2219, 2335, 2600, 2898, 3182, 3206 |
| ApaI | GGGCCC | 1 cut(s) | 2339 |
| ApaLI | GTGCAC | 2 cut(s) | 290, 2352 |
| ApeKI | GCWGC | 9 cut(s) | 122, 394, 1454, 1457, 2093, 2230, 3493, 3594, 3623 |
| ApoI | RAATTY | 7 cut(s) | 720, 1404, 1696, 1861, 2176, 2852, 3436 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 86, 118, 440, 472 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2001, 2934 |
| AspLEI | GCGC | 5 cut(s) | 114, 122, 1676, 1678, 2784 |
| AspS9I | GGNCC | 3 cut(s) | 865, 2335, 2336 |
| AsuC2I | CCSGG | 2 cut(s) | 1431, 2902 |
| AsuHPI | GGTGA | 5 cut(s) | 280, 1292, 1408, 1988, 3386 |
| AsuII | TTCGAA | 1 cut(s) | 2857 |
| AsuNHI | GCTAGC | 2 cut(s) | 1670, 3590 |
| AvaII | GGWCC | 1 cut(s) | 865 |
| BaeGI | GKGCMC | 4 cut(s) | 294, 2339, 2356, 3865 |
| BamHI | GGATCC | 1 cut(s) | 3220 |
| BanI | GGYRCC | 1 cut(s) | 181 |
| BanII | GRGCYC | 2 cut(s) | 360, 2339 |
| BbrPI | CACGTG | 1 cut(s) | 3748 |
| BbsI | GAAGAC | 3 cut(s) | 239, 1190, 2822 |
| Bbv12I | GWGCWC | 4 cut(s) | 294, 472, 2356, 3718 |
| BbvCI | CCTCAGC | 1 cut(s) | 2736 |
| BbvI | GCAGC | 9 cut(s) | 134, 381, 1444, 1466, 2080, 2217, 3505, 3581, 3610 |
| BceAI | ACGGC | 4 cut(s) | 44, 53, 149, 1614 |
| BcgI | CGANNNNNNTGC | 3 cut(s) | 37, 313, 347 |
| BciT130I | CCWGG | 7 cut(s) | 564, 1143, 1384, 1410, 1609, 2223, 3135 |
| BclI | TGATCA | 1 cut(s) | 2185 |
| BcnI | CCSGG | 2 cut(s) | 1431, 2902 |
| BcoDI | GTCTC | 8 cut(s) | 743, 919, 1242, 1922, 2021, 2765, 3259, 3638 |
| BfmI | CTRYAG | 1 cut(s) | 1687 |
| BfrI | CTTAAG | 2 cut(s) | 1504, 1838 |
| BfuAI | ACCTGC | 1 cut(s) | 949 |
| BglII | AGATCT | 1 cut(s) | 1522 |
| Bme1390I | CCNGG | 9 cut(s) | 564, 1143, 1384, 1410, 1431, 1609, 2223, 2902, 3135 |
| Bme18I | GGWCC | 1 cut(s) | 865 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1915, 1935 |
| BmgT120I | GGNCC | 3 cut(s) | 865, 2335, 2336 |
| BmiI | GGNNCC | 6 cut(s) | 183, 2336, 2337, 2338, 3222, 3672 |
| BmrFI | CCNGG | 9 cut(s) | 564, 1143, 1384, 1410, 1431, 1609, 2223, 2902, 3135 |
| BmrI | ACTGGG | 2 cut(s) | 2200, 3226 |
| BmtI | GCTAGC | 2 cut(s) | 1674, 3594 |
| BmuI | ACTGGG | 2 cut(s) | 2200, 3226 |
| BpiI | GAAGAC | 3 cut(s) | 239, 1190, 2822 |
| BpmI | CTGGAG | 4 cut(s) | 1095, 1194, 1818, 3812 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2736 |
| Bpu14I | TTCGAA | 1 cut(s) | 2857 |
| BpuEI | CTTGAG | 4 cut(s) | 505, 2395, 2522, 3491 |
| BpuMI | CCSGG | 2 cut(s) | 1431, 2902 |
| Bsa29I | ATCGAT | 1 cut(s) | 333 |
| BsaAI | YACGTR | 1 cut(s) | 3748 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1983 |
| BsaHI | GRCGYC | 5 cut(s) | 20, 132, 156, 366, 405 |
| BsaI | GGTCTC | 3 cut(s) | 1242, 2021, 3638 |
| BsaJI | CCNNGG | 7 cut(s) | 906, 1608, 1679, 1785, 3133, 3336, 3856 |
| BsaWI | WCCGGW | 1 cut(s) | 3223 |
| Bse118I | RCCGGY | 3 cut(s) | 178, 362, 464 |
| Bse1I | ACTGG | 7 cut(s) | 547, 782, 1093, 2195, 2807, 3221, 3573 |
| Bse3DI | GCAATG | 7 cut(s) | 215, 557, 582, 2531, 3281, 3504, 3768 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1983 |
| BseAI | TCCGGA | 1 cut(s) | 3223 |
| BseBI | CCWGG | 7 cut(s) | 564, 1143, 1384, 1410, 1609, 2223, 3135 |
| BseCI | ATCGAT | 1 cut(s) | 333 |
| BseDI | CCNNGG | 7 cut(s) | 906, 1608, 1679, 1785, 3133, 3336, 3856 |
| BseGI | GGATG | 8 cut(s) | 981, 1012, 1547, 2974, 3421, 3534, 3619, 3729 |
| BseJI | GATNNNNATC | 1 cut(s) | 1983 |
| BseMI | GCAATG | 7 cut(s) | 215, 557, 582, 2531, 3281, 3504, 3768 |
| BseMII | CTCAG | 5 cut(s) | 397, 2113, 2142, 2727, 3357 |
| BseNI | ACTGG | 7 cut(s) | 547, 782, 1093, 2195, 2807, 3221, 3573 |
| BsePI | GCGCGC | 1 cut(s) | 1674 |
| BseRI | GAGGAG | 5 cut(s) | 184, 265, 268, 1197, 3002 |
| BseSI | GKGCMC | 4 cut(s) | 294, 2339, 2356, 3865 |
| BseXI | GCAGC | 9 cut(s) | 134, 381, 1444, 1466, 2080, 2217, 3505, 3581, 3610 |
| BseYI | CCCAGC | 2 cut(s) | 2588, 3524 |
| BsgI | GTGCAG | 6 cut(s) | 513, 1513, 2253, 2346, 3580, 3838 |
| Bsh1236I | CGCG | 3 cut(s) | 112, 120, 1676 |
| BshFI | GGCC | 6 cut(s) | 2221, 2337, 2602, 2900, 3184, 3208 |
| BshNI | GGYRCC | 1 cut(s) | 181 |
| BshVI | ATCGAT | 1 cut(s) | 333 |
| BsiHKAI | GWGCWC | 4 cut(s) | 294, 472, 2356, 3718 |
| BsiSI | CCGG | 8 cut(s) | 179, 185, 363, 465, 1431, 1551, 2901, 3224 |
| BslFI | GGGAC | 5 cut(s) | 1413, 2153, 2300, 3318, 3695 |
| BsmAI | GTCTC | 8 cut(s) | 743, 919, 1242, 1922, 2021, 2765, 3259, 3638 |
| BsmFI | GGGAC | 5 cut(s) | 1413, 2153, 2300, 3318, 3695 |
| BsmI | GAATGC | 2 cut(s) | 3314, 3544 |
| BsnI | GGCC | 6 cut(s) | 2221, 2337, 2602, 2900, 3184, 3208 |
| Bso31I | GGTCTC | 3 cut(s) | 1242, 2021, 3638 |
| Bsp119I | TTCGAA | 1 cut(s) | 2857 |
| Bsp120I | GGGCCC | 1 cut(s) | 2335 |
| Bsp1286I | GDGCHC | 7 cut(s) | 294, 360, 472, 2339, 2356, 3718, 3865 |
| Bsp13I | TCCGGA | 1 cut(s) | 3223 |
| Bsp1407I | TGTACA | 2 cut(s) | 1235, 3742 |
| Bsp143I | GATC | 7 cut(s) | 330, 1370, 1522, 2185, 2630, 2809, 3220 |
| Bsp19I | CCATGG | 2 cut(s) | 1679, 3336 |
| BspANI | GGCC | 6 cut(s) | 2221, 2337, 2602, 2900, 3184, 3208 |
| BspCNI | CTCAG | 5 cut(s) | 396, 2112, 2141, 2728, 3358 |
| BspDI | ATCGAT | 1 cut(s) | 333 |
| BspEI | TCCGGA | 1 cut(s) | 3223 |
| BspFNI | CGCG | 3 cut(s) | 112, 120, 1676 |
| BspHI | TCATGA | 3 cut(s) | 715, 2548, 3427 |
| BspLI | GGNNCC | 6 cut(s) | 183, 2336, 2337, 2338, 3222, 3672 |
| BspMI | ACCTGC | 1 cut(s) | 949 |
| BspOI | GCTAGC | 2 cut(s) | 1674, 3594 |
| BspPI | GGATC | 3 cut(s) | 2804, 3215, 3228 |
| BspQI | GCTCTTC | 1 cut(s) | 3774 |
| BspT104I | TTCGAA | 1 cut(s) | 2857 |
| BspT107I | GGYRCC | 1 cut(s) | 181 |
| BspTI | CTTAAG | 2 cut(s) | 1504, 1838 |
| BspTNI | GGTCTC | 3 cut(s) | 1242, 2021, 3638 |
| BsrDI | GCAATG | 7 cut(s) | 215, 557, 582, 2531, 3281, 3504, 3768 |
| BsrFI | RCCGGY | 3 cut(s) | 178, 362, 464 |
| BsrGI | TGTACA | 2 cut(s) | 1235, 3742 |
| BsrI | ACTGG | 7 cut(s) | 547, 782, 1093, 2195, 2807, 3221, 3573 |
| BssAI | RCCGGY | 3 cut(s) | 178, 362, 464 |
| BssECI | CCNNGG | 7 cut(s) | 906, 1608, 1679, 1785, 3133, 3336, 3856 |
| BssHII | GCGCGC | 1 cut(s) | 1674 |
| BssMI | GATC | 7 cut(s) | 330, 1370, 1522, 2185, 2630, 2809, 3220 |
| BssNI | GRCGYC | 5 cut(s) | 20, 132, 156, 366, 405 |
| BssT1I | CCWWGG | 5 cut(s) | 906, 1679, 1785, 3336, 3856 |
| Bst2UI | CCWGG | 7 cut(s) | 564, 1143, 1384, 1410, 1609, 2223, 3135 |
| Bst6I | CTCTTC | 3 cut(s) | 242, 3774, 3831 |
| BstACI | GRCGYC | 5 cut(s) | 20, 132, 156, 366, 405 |
| BstAFI | CTTAAG | 2 cut(s) | 1504, 1838 |
| BstAUI | TGTACA | 2 cut(s) | 1235, 3742 |
| BstBAI | YACGTR | 1 cut(s) | 3748 |
| BstBI | TTCGAA | 1 cut(s) | 2857 |
| BstC8I | GCNNGC | 7 cut(s) | 360, 364, 1672, 1676, 2926, 3080, 3592 |
| BstDSI | CCRYGG | 2 cut(s) | 1679, 3336 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1146, 2549 |
| BstF5I | GGATG | 8 cut(s) | 981, 1012, 1547, 2974, 3421, 3534, 3619, 3729 |
| BstFNI | CGCG | 3 cut(s) | 112, 120, 1676 |
| BstHHI | GCGC | 5 cut(s) | 114, 122, 1676, 1678, 2784 |
| BstKTI | GATC | 7 cut(s) | 333, 1373, 1525, 2188, 2633, 2812, 3223 |
| BstMAI | GTCTC | 8 cut(s) | 743, 919, 1242, 1922, 2021, 2765, 3259, 3638 |
| BstMBI | GATC | 7 cut(s) | 330, 1370, 1522, 2185, 2630, 2809, 3220 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 65, 709, 1500, 1509, 1762, 2218, 2227, 3079 |
| BstNI | CCWGG | 7 cut(s) | 564, 1143, 1384, 1410, 1609, 2223, 3135 |
| BstNSI | RCATGY | 3 cut(s) | 2216, 2747, 3659 |
| BstSCI | CCNGG | 9 cut(s) | 562, 1141, 1382, 1408, 1429, 1607, 2221, 2900, 3133 |
| BstSFI | CTRYAG | 1 cut(s) | 1687 |
| BstSLI | GKGCMC | 4 cut(s) | 294, 2339, 2356, 3865 |
| BstUI | CGCG | 3 cut(s) | 112, 120, 1676 |
| BstV1I | GCAGC | 9 cut(s) | 134, 381, 1444, 1466, 2080, 2217, 3505, 3581, 3610 |
| BstV2I | GAAGAC | 3 cut(s) | 239, 1190, 2822 |
| BstX2I | RGATCY | 2 cut(s) | 1522, 3220 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1259, 2847 |
| BstYI | RGATCY | 2 cut(s) | 1522, 3220 |
| Bsu15I | ATCGAT | 1 cut(s) | 333 |
| BsuRI | GGCC | 6 cut(s) | 2221, 2337, 2602, 2900, 3184, 3208 |
| BsuTUI | ATCGAT | 1 cut(s) | 333 |
| BtgI | CCRYGG | 2 cut(s) | 1679, 3336 |
| BtsCI | GGATG | 8 cut(s) | 981, 1012, 1547, 2974, 3421, 3534, 3619, 3729 |
| BtsI | GCAGTG | 2 cut(s) | 1482, 2852 |
| BveI | ACCTGC | 1 cut(s) | 949 |
| Cac8I | GCNNGC | 7 cut(s) | 360, 364, 1672, 1676, 2926, 3080, 3592 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1457, 2924 |
| CciI | TCATGA | 3 cut(s) | 715, 2548, 3427 |
| CfoI | GCGC | 5 cut(s) | 114, 122, 1676, 1678, 2784 |
| Cfr10I | RCCGGY | 3 cut(s) | 178, 362, 464 |
| Cfr13I | GGNCC | 3 cut(s) | 865, 2335, 2336 |
| ClaI | ATCGAT | 1 cut(s) | 333 |
| CseI | GACGC | 3 cut(s) | 20, 164, 355 |
| Csp6I | GTAC | 7 cut(s) | 550, 1220, 1236, 2862, 3126, 3743, 3926 |
| CviQI | GTAC | 7 cut(s) | 550, 1220, 1236, 2862, 3126, 3743, 3926 |
| DpnI | GATC | 7 cut(s) | 332, 1372, 1524, 2187, 2632, 2811, 3222 |
| DpnII | GATC | 7 cut(s) | 330, 1370, 1522, 2185, 2630, 2809, 3220 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1915, 1935 |
| EaeI | YGGCCR | 2 cut(s) | 2898, 3182 |
| Eam1104I | CTCTTC | 3 cut(s) | 242, 3774, 3831 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1915, 1935 |
| EarI | CTCTTC | 3 cut(s) | 242, 3774, 3831 |
| EciI | GGCGGA | 2 cut(s) | 1654, 2581 |
| Eco130I | CCWWGG | 5 cut(s) | 906, 1679, 1785, 3336, 3856 |
| Eco147I | AGGCCT | 2 cut(s) | 2221, 2602 |
| Eco24I | GRGCYC | 2 cut(s) | 360, 2339 |
| Eco31I | GGTCTC | 3 cut(s) | 1242, 2021, 3638 |
| Eco47I | GGWCC | 1 cut(s) | 865 |
| Eco57I | CTGAAG | 3 cut(s) | 1059, 1202, 1752 |
| Eco72I | CACGTG | 1 cut(s) | 3748 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1146, 2549 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2335, 2336 |
| EcoRI | GAATTC | 1 cut(s) | 1696 |
| EcoRII | CCWGG | 7 cut(s) | 562, 1141, 1382, 1408, 1607, 2221, 3133 |
| EcoT14I | CCWWGG | 5 cut(s) | 906, 1679, 1785, 3336, 3856 |
| EcoT22I | ATGCAT | 2 cut(s) | 932, 3546 |
| EcoT38I | GRGCYC | 2 cut(s) | 360, 2339 |
| ErhI | CCWWGG | 5 cut(s) | 906, 1679, 1785, 3336, 3856 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 582, 614, 2140, 2172 |
| FaqI | GGGAC | 5 cut(s) | 1413, 2153, 2300, 3318, 3695 |
| FauI | CCCGC | 1 cut(s) | 367 |
| FauNDI | CATATG | 1 cut(s) | 629 |
| FbaI | TGATCA | 1 cut(s) | 2185 |
| FblI | GTMKAC | 1 cut(s) | 2971 |
| FokI | GGATG | 8 cut(s) | 988, 999, 1534, 2961, 3428, 3541, 3626, 3736 |
| FriOI | GRGCYC | 2 cut(s) | 360, 2339 |
| GlaI | GCGC | 5 cut(s) | 113, 121, 1675, 1677, 2783 |
| GsaI | CCCAGC | 2 cut(s) | 2592, 3528 |
| GsuI | CTGGAG | 4 cut(s) | 1095, 1194, 1818, 3812 |
| HaeIII | GGCC | 6 cut(s) | 2221, 2337, 2602, 2900, 3184, 3208 |
| HapII | CCGG | 8 cut(s) | 179, 185, 363, 465, 1431, 1551, 2901, 3224 |
| HgaI | GACGC | 3 cut(s) | 20, 164, 355 |
| HhaI | GCGC | 5 cut(s) | 114, 122, 1676, 1678, 2784 |
| Hin1I | GRCGYC | 5 cut(s) | 20, 132, 156, 366, 405 |
| Hin6I | GCGC | 5 cut(s) | 112, 120, 1674, 1676, 2782 |
| HinP1I | GCGC | 5 cut(s) | 112, 120, 1674, 1676, 2782 |
| HincII | GTYRAC | 5 cut(s) | 403, 508, 2513, 3237, 3501 |
| HindII | GTYRAC | 5 cut(s) | 403, 508, 2513, 3237, 3501 |
| HindIII | AAGCTT | 1 cut(s) | 1643 |
| HpaII | CCGG | 8 cut(s) | 179, 185, 363, 465, 1431, 1551, 2901, 3224 |
| HphI | GGTGA | 5 cut(s) | 280, 1292, 1408, 1988, 3386 |
| Hpy99I | CGWCG | 8 cut(s) | 11, 14, 22, 25, 134, 158, 170, 371 |
| HpyCH4IV | ACGT | 7 cut(s) | 20, 132, 405, 985, 2635, 3747, 3874 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 65, 709, 1500, 1509, 1762, 2218, 2227, 3079 |
| HpySE526I | ACGT | 7 cut(s) | 20, 132, 405, 985, 2635, 3747, 3874 |
| Hsp92I | GRCGYC | 5 cut(s) | 20, 132, 156, 366, 405 |
| HspAI | GCGC | 5 cut(s) | 112, 120, 1674, 1676, 2782 |
| Kpn2I | TCCGGA | 1 cut(s) | 3223 |
| KroI | GCCGGC | 1 cut(s) | 362 |
| KroNI | GCCGGC | 1 cut(s) | 364 |
| Ksp22I | TGATCA | 1 cut(s) | 2185 |
| Kzo9I | GATC | 7 cut(s) | 330, 1370, 1522, 2185, 2630, 2809, 3220 |
| LguI | GCTCTTC | 1 cut(s) | 3774 |
| LmnI | GCTCC | 8 cut(s) | 130, 205, 276, 1102, 1311, 1500, 1544, 3687 |
| Lsp1109I | GCAGC | 9 cut(s) | 134, 381, 1444, 1466, 2080, 2217, 3505, 3581, 3610 |
| MaeII | ACGT | 7 cut(s) | 20, 132, 405, 985, 2635, 3747, 3874 |
| MaeIII | GTNAC | 7 cut(s) | 70, 1084, 2054, 2249, 2914, 3564, 3649 |
| MalI | GATC | 7 cut(s) | 332, 1372, 1524, 2187, 2632, 2811, 3222 |
| MboI | GATC | 7 cut(s) | 330, 1370, 1522, 2185, 2630, 2809, 3220 |
| MflI | RGATCY | 2 cut(s) | 1522, 3220 |
| MhlI | GDGCHC | 7 cut(s) | 294, 360, 472, 2339, 2356, 3718, 3865 |
| MlyI | GAGTC | 5 cut(s) | 785, 2388, 2485, 2836, 3418 |
| MmeI | TCCRAC | 3 cut(s) | 1623, 2450, 2513 |
| Mph1103I | ATGCAT | 2 cut(s) | 932, 3546 |
| MreI | CGCCGGCG | 1 cut(s) | 362 |
| MroI | TCCGGA | 1 cut(s) | 3223 |
| MroNI | GCCGGC | 1 cut(s) | 362 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2001, 2934 |
| MslI | CAYNNNNRTG | 3 cut(s) | 284, 1832, 3480 |
| MspA1I | CMGCKG | 4 cut(s) | 1457, 1796, 1915, 2230 |
| MspCI | CTTAAG | 2 cut(s) | 1504, 1838 |
| MspI | CCGG | 8 cut(s) | 179, 185, 363, 465, 1431, 1551, 2901, 3224 |
| MspR9I | CCNGG | 9 cut(s) | 564, 1143, 1384, 1410, 1431, 1609, 2223, 2902, 3135 |
| Mva1269I | GAATGC | 2 cut(s) | 3314, 3544 |
| MvaI | CCWGG | 7 cut(s) | 564, 1143, 1384, 1410, 1609, 2223, 3135 |
| MvnI | CGCG | 3 cut(s) | 112, 120, 1676 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 65, 709, 1500, 1509, 1762, 2218, 2227, 3079 |
| NaeI | GCCGGC | 1 cut(s) | 364 |
| NciI | CCSGG | 2 cut(s) | 1431, 2902 |
| NcoI | CCATGG | 2 cut(s) | 1679, 3336 |
| NdeI | CATATG | 1 cut(s) | 629 |
| NdeII | GATC | 7 cut(s) | 330, 1370, 1522, 2185, 2630, 2809, 3220 |
| NgoMIV | GCCGGC | 1 cut(s) | 362 |
| NheI | GCTAGC | 2 cut(s) | 1670, 3590 |
| NlaIV | GGNNCC | 6 cut(s) | 183, 2336, 2337, 2338, 3222, 3672 |
| NmeAIII | GCCGAG | 1 cut(s) | 3160 |
| NmuCI | GTSAC | 4 cut(s) | 70, 1084, 2249, 3564 |
| NsiI | ATGCAT | 2 cut(s) | 932, 3546 |
| NspI | RCATGY | 3 cut(s) | 2216, 2747, 3659 |
| NspV | TTCGAA | 1 cut(s) | 2857 |
| PagI | TCATGA | 3 cut(s) | 715, 2548, 3427 |
| PauI | GCGCGC | 1 cut(s) | 1674 |
| PceI | AGGCCT | 2 cut(s) | 2221, 2602 |
| PciSI | GCTCTTC | 1 cut(s) | 3774 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 162, 2486, 3871 |
| PctI | GAATGC | 2 cut(s) | 3314, 3544 |
| PdiI | GCCGGC | 1 cut(s) | 364 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2001, 2934 |
| PflFI | GACNNNGTC | 1 cut(s) | 512 |
| PfoI | TCCNGGA | 1 cut(s) | 1408 |
| PleI | GAGTC | 5 cut(s) | 785, 2387, 2485, 2835, 3418 |
| PmaCI | CACGTG | 1 cut(s) | 3748 |
| PmlI | CACGTG | 1 cut(s) | 3748 |
| PpsI | GAGTC | 5 cut(s) | 785, 2387, 2485, 2835, 3418 |
| Ppu21I | YACGTR | 1 cut(s) | 3748 |
| PsiI | TTATAA | 1 cut(s) | 2757 |
| Psp1406I | AACGTT | 1 cut(s) | 3874 |
| Psp6I | CCWGG | 7 cut(s) | 562, 1141, 1382, 1408, 1607, 2221, 3133 |
| PspCI | CACGTG | 1 cut(s) | 3748 |
| PspFI | CCCAGC | 2 cut(s) | 2588, 3524 |
| PspGI | CCWGG | 7 cut(s) | 562, 1141, 1382, 1408, 1607, 2221, 3133 |
| PspN4I | GGNNCC | 6 cut(s) | 183, 2336, 2337, 2338, 3222, 3672 |
| PspOMI | GGGCCC | 1 cut(s) | 2335 |
| PspPI | GGNCC | 3 cut(s) | 865, 2335, 2336 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1457, 2924 |
| PsuI | RGATCY | 2 cut(s) | 1522, 3220 |
| PsyI | GACNNNGTC | 1 cut(s) | 512 |
| PteI | GCGCGC | 1 cut(s) | 1674 |
| PvuII | CAGCTG | 4 cut(s) | 1457, 1796, 1915, 2230 |
| RsaI | GTAC | 7 cut(s) | 551, 1221, 1237, 2863, 3127, 3744, 3927 |
| RsaNI | GTAC | 7 cut(s) | 550, 1220, 1236, 2862, 3126, 3743, 3926 |
| RseI | CAYNNNNRTG | 3 cut(s) | 284, 1832, 3480 |
| SapI | GCTCTTC | 1 cut(s) | 3774 |
| Sau3AI | GATC | 7 cut(s) | 330, 1370, 1522, 2185, 2630, 2809, 3220 |
| Sau96I | GGNCC | 3 cut(s) | 865, 2335, 2336 |
| SchI | GAGTC | 5 cut(s) | 785, 2388, 2485, 2836, 3418 |
| ScrFI | CCNGG | 9 cut(s) | 564, 1143, 1384, 1410, 1431, 1609, 2223, 2902, 3135 |
| SduI | GDGCHC | 7 cut(s) | 294, 360, 472, 2339, 2356, 3718, 3865 |
| SfcI | CTRYAG | 1 cut(s) | 1687 |
| SfuI | TTCGAA | 1 cut(s) | 2857 |
| SgrAI | CRCCGGYG | 2 cut(s) | 178, 362 |
| SinI | GGWCC | 1 cut(s) | 865 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 284, 1832, 3480 |
| SmlI | CTYRAG | 6 cut(s) | 484, 1504, 1838, 2410, 2537, 3470 |
| SmoI | CTYRAG | 6 cut(s) | 484, 1504, 1838, 2410, 2537, 3470 |
| SseBI | AGGCCT | 2 cut(s) | 2221, 2602 |
| SspI | AATATT | 1 cut(s) | 3013 |
| StuI | AGGCCT | 2 cut(s) | 2221, 2602 |
| StyD4I | CCNGG | 9 cut(s) | 562, 1141, 1382, 1408, 1429, 1607, 2221, 2900, 3133 |
| StyI | CCWWGG | 5 cut(s) | 906, 1679, 1785, 3336, 3856 |
| TaiI | ACGT | 7 cut(s) | 23, 135, 408, 988, 2638, 3750, 3877 |
| TaqI | TCGA | 5 cut(s) | 333, 478, 2857, 3096, 3636 |
| TatI | WGTACW | 5 cut(s) | 549, 1235, 2861, 3125, 3742 |
| TauI | GCSGC | 5 cut(s) | 48, 82, 85, 161, 164 |
| TseFI | GTSAC | 4 cut(s) | 70, 1084, 2249, 3564 |
| TseI | GCWGC | 9 cut(s) | 122, 394, 1454, 1457, 2093, 2230, 3493, 3594, 3623 |
| Tsp45I | GTSAC | 4 cut(s) | 70, 1084, 2249, 3564 |
| TspGWI | ACGGA | 2 cut(s) | 1977, 3943 |
| Tth111I | GACNNNGTC | 1 cut(s) | 512 |
| Vha464I | CTTAAG | 2 cut(s) | 1504, 1838 |
| VneI | GTGCAC | 2 cut(s) | 290, 2352 |
| VpaK11BI | GGWCC | 1 cut(s) | 865 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1146, 2549 |
| XapI | RAATTY | 7 cut(s) | 720, 1404, 1696, 1861, 2176, 2852, 3436 |
| XceI | RCATGY | 3 cut(s) | 2216, 2747, 3659 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3201 |
| XmiI | GTMKAC | 1 cut(s) | 2971 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2001, 2934 |
| ZraI | GACGTC | 3 cut(s) | 21, 133, 406 |
| Zsp2I | ATGCAT | 2 cut(s) | 932, 3546 |