f-box protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G54460 AT3G54460 |
| fragaria_vesca | FvH4_7g02950 FvH4_7g02950 FvH4_7g02950 |
| malus_domestica | MD02G1288500.v1.1 MD07G1038300.v1.1 |
| prunus_persica | Prupe.2G034500_v2.0.a1 Prupe.2G034500_v2.0.a1 |
| pyrus_communis | pycom07g02660 |
| rosa_chinensis | RchiOBHm_Chr1g0323901 |
| rosa_laevigata | RLG00000030243 RLG00000031960 |
| rosa_multiflora | Rmu_sc0001449.1_g000002 Rmu_sc0012343.1_g000008 |
| rosa_roxburghii | Rroxscaffold_4G00326120 |
| rosa_rugosa | Rorug01G0040500.1 |
| rosa_samantha | Rh1CG059700 Rh1CG060300 Rh1DG063700 Rh1DG064300 |
| rosa_wichuraiana | Rw0G011390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1617 |
| AatII | GACGTC | 1 cut(s) | 138 |
| Acc36I | ACCTGC | 1 cut(s) | 884 |
| AccB1I | GGYRCC | 2 cut(s) | 107, 1984 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 364, 1247 |
| AccBSI | CCGCTC | 1 cut(s) | 1509 |
| AcoI | YGGCCR | 2 cut(s) | 897, 3624 |
| AcsI | RAATTY | 8 cut(s) | 120, 708, 1321, 1876, 2194, 2220, 3362, 3991 |
| AcuI | CTGAAG | 2 cut(s) | 1047, 1767 |
| AcvI | CACGTG | 1 cut(s) | 3802 |
| AcyI | GRCGYC | 3 cut(s) | 135, 159, 1985 |
| AfaI | GTAC | 6 cut(s) | 1010, 1209, 1225, 3145, 3826, 4019 |
| AflIII | ACRYGT | 4 cut(s) | 1210, 3535, 3709, 3799 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 13 |
| AjnI | CCWGG | 9 cut(s) | 1370, 1420, 1496, 1625, 1754, 1987, 2239, 2300, 3151 |
| AleI | CACNNNNGTG | 1 cut(s) | 1979 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2494, 2526 |
| Alw21I | GWGCWC | 7 cut(s) | 330, 351, 523, 1976, 2388, 3473, 3772 |
| Alw26I | GTCTC | 6 cut(s) | 883, 907, 1937, 2039, 3479, 3972 |
| Alw44I | GTGCAC | 3 cut(s) | 326, 347, 2384 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1457, 2942 |
| Ama87I | CYCGRG | 1 cut(s) | 496 |
| AoxI | GGCC | 9 cut(s) | 897, 1583, 2237, 2298, 2353, 2618, 3224, 3624, 3685 |
| ApaLI | GTGCAC | 3 cut(s) | 326, 347, 2384 |
| ApoI | RAATTY | 8 cut(s) | 120, 708, 1321, 1876, 2194, 2220, 3362, 3991 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1936, 1968 |
| AseI | ATTAAT | 1 cut(s) | 2810 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2952 |
| AspA2I | CCTAGG | 1 cut(s) | 1586 |
| AspLEI | GCGC | 3 cut(s) | 56, 563, 1987 |
| AspS9I | GGNCC | 3 cut(s) | 1424, 2353, 3685 |
| AsuC2I | CCSGG | 4 cut(s) | 80, 206, 269, 1131 |
| AsuHPI | GGTGA | 5 cut(s) | 1247, 1280, 2003, 2127, 2957 |
| AsuII | TTCGAA | 1 cut(s) | 2875 |
| AsuNHI | GCTAGC | 1 cut(s) | 3602 |
| AvaI | CYCGRG | 1 cut(s) | 496 |
| AvaII | GGWCC | 1 cut(s) | 1424 |
| AvrII | CCTAGG | 1 cut(s) | 1586 |
| BaeGI | GKGCMC | 5 cut(s) | 330, 351, 2388, 2418, 3922 |
| BalI | TGGCCA | 1 cut(s) | 3626 |
| BamHI | GGATCC | 2 cut(s) | 82, 3280 |
| BanI | GGYRCC | 2 cut(s) | 107, 1984 |
| BanII | GRGCYC | 2 cut(s) | 523, 1131 |
| BauI | CACGAG | 1 cut(s) | 2567 |
| BbrPI | CACGTG | 1 cut(s) | 3802 |
| Bbv12I | GWGCWC | 7 cut(s) | 330, 351, 523, 1976, 2388, 3473, 3772 |
| BbvCI | CCTCAGC | 1 cut(s) | 190 |
| BceAI | ACGGC | 4 cut(s) | 41, 172, 884, 3055 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 2744, 2778, 3104, 3138, 3295, 3329 |
| BciT130I | CCWGG | 9 cut(s) | 1372, 1422, 1498, 1627, 1756, 1989, 2241, 2302, 3153 |
| BciVI | GTATCC | 1 cut(s) | 667 |
| BclI | TGATCA | 1 cut(s) | 2203 |
| BcnI | CCSGG | 4 cut(s) | 80, 206, 269, 1131 |
| BcoDI | GTCTC | 6 cut(s) | 883, 907, 1937, 2039, 3479, 3972 |
| BfmI | CTRYAG | 2 cut(s) | 968, 3912 |
| BfoI | RGCGCY | 1 cut(s) | 1988 |
| BfuAI | ACCTGC | 1 cut(s) | 884 |
| BfuI | GTATCC | 1 cut(s) | 667 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3097 |
| BglII | AGATCT | 2 cut(s) | 788, 3238 |
| BlnI | CCTAGG | 1 cut(s) | 1586 |
| Bme18I | GGWCC | 1 cut(s) | 1424 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 13 |
| BmeT110I | CYCGRG | 1 cut(s) | 496 |
| BmgT120I | GGNCC | 3 cut(s) | 1424, 2353, 3685 |
| BmiI | GGNNCC | 9 cut(s) | 84, 109, 266, 508, 1807, 1986, 2354, 3282, 3726 |
| BmrI | ACTGGG | 5 cut(s) | 121, 556, 1086, 1796, 3286 |
| BmtI | GCTAGC | 1 cut(s) | 3606 |
| BmuI | ACTGGG | 5 cut(s) | 121, 556, 1086, 1796, 3286 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1314 |
| BpmI | CTGGAG | 3 cut(s) | 438, 3360, 3866 |
| Bpu10I | CCTNAGC | 1 cut(s) | 190 |
| Bpu14I | TTCGAA | 1 cut(s) | 2875 |
| BpuEI | CTTGAG | 5 cut(s) | 1525, 2413, 2540, 3465, 3545 |
| BpuMI | CCSGG | 4 cut(s) | 80, 206, 269, 1131 |
| Bsa29I | ATCGAT | 2 cut(s) | 390, 4028 |
| BsaAI | YACGTR | 1 cut(s) | 3802 |
| BsaBI | GATNNNNATC | 1 cut(s) | 459 |
| BsaHI | GRCGYC | 3 cut(s) | 135, 159, 1985 |
| BsaI | GGTCTC | 1 cut(s) | 2039 |
| BsaJI | CCNNGG | 8 cut(s) | 78, 174, 1586, 1626, 1755, 2002, 2301, 2754 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 263, 293, 2488, 2494, 2518, 2524 |
| Bse8I | GATNNNNATC | 1 cut(s) | 459 |
| BseBI | CCWGG | 9 cut(s) | 1372, 1422, 1498, 1627, 1756, 1989, 2241, 2302, 3153 |
| BseCI | ATCGAT | 2 cut(s) | 390, 4028 |
| BseDI | CCNNGG | 8 cut(s) | 78, 174, 1586, 1626, 1755, 2002, 2301, 2754 |
| BseJI | GATNNNNATC | 1 cut(s) | 459 |
| BseMII | CTCAG | 5 cut(s) | 204, 878, 2131, 3411, 3941 |
| BseRI | GAGGAG | 6 cut(s) | 274, 313, 316, 325, 1830, 3020 |
| BseSI | GKGCMC | 5 cut(s) | 330, 351, 2388, 2418, 3922 |
| BseYI | CCCAGC | 3 cut(s) | 2606, 2918, 3578 |
| BsgI | GTGCAG | 4 cut(s) | 822, 2271, 2364, 3892 |
| BshFI | GGCC | 9 cut(s) | 899, 1585, 2239, 2300, 2355, 2620, 3226, 3626, 3687 |
| BshNI | GGYRCC | 2 cut(s) | 107, 1984 |
| BshVI | ATCGAT | 2 cut(s) | 390, 4028 |
| BsiHKAI | GWGCWC | 7 cut(s) | 330, 351, 523, 1976, 2388, 3473, 3772 |
| BsiHKCI | CYCGRG | 1 cut(s) | 496 |
| BsiSI | CCGG | 6 cut(s) | 80, 206, 269, 504, 516, 1131 |
| BslFI | GGGAC | 3 cut(s) | 1322, 2318, 3749 |
| BsmAI | GTCTC | 6 cut(s) | 883, 907, 1937, 2039, 3479, 3972 |
| BsmBI | CGTCTC | 1 cut(s) | 907 |
| BsmFI | GGGAC | 3 cut(s) | 1322, 2318, 3749 |
| BsmI | GAATGC | 2 cut(s) | 1717, 4009 |
| BsnI | GGCC | 9 cut(s) | 899, 1585, 2239, 2300, 2355, 2620, 3226, 3626, 3687 |
| Bso31I | GGTCTC | 1 cut(s) | 2039 |
| BsoBI | CYCGRG | 1 cut(s) | 496 |
| Bsp119I | TTCGAA | 1 cut(s) | 2875 |
| Bsp1407I | TGTACA | 3 cut(s) | 1223, 3143, 4017 |
| Bsp19I | CCATGG | 1 cut(s) | 2002 |
| BspANI | GGCC | 9 cut(s) | 899, 1585, 2239, 2300, 2355, 2620, 3226, 3626, 3687 |
| BspCNI | CTCAG | 5 cut(s) | 203, 879, 2130, 3412, 3940 |
| BspDI | ATCGAT | 2 cut(s) | 390, 4028 |
| BspHI | TCATGA | 2 cut(s) | 1384, 1968 |
| BspLI | GGNNCC | 9 cut(s) | 84, 109, 266, 508, 1807, 1986, 2354, 3282, 3726 |
| BspMI | ACCTGC | 1 cut(s) | 884 |
| BspOI | GCTAGC | 1 cut(s) | 3606 |
| BspQI | GCTCTTC | 1 cut(s) | 3828 |
| BspT104I | TTCGAA | 1 cut(s) | 2875 |
| BspT107I | GGYRCC | 2 cut(s) | 107, 1984 |
| BspTNI | GGTCTC | 1 cut(s) | 2039 |
| BsrBI | CCGCTC | 1 cut(s) | 1509 |
| BsrGI | TGTACA | 3 cut(s) | 1223, 3143, 4017 |
| BssECI | CCNNGG | 8 cut(s) | 78, 174, 1586, 1626, 1755, 2002, 2301, 2754 |
| BssNI | GRCGYC | 3 cut(s) | 135, 159, 1985 |
| BssSI | CACGAG | 1 cut(s) | 2567 |
| BssT1I | CCWWGG | 2 cut(s) | 1586, 2002 |
| Bst2BI | CACGAG | 1 cut(s) | 2567 |
| Bst2UI | CCWGG | 9 cut(s) | 1372, 1422, 1498, 1627, 1756, 1989, 2241, 2302, 3153 |
| Bst6I | CTCTTC | 4 cut(s) | 251, 2038, 3828, 3885 |
| BstACI | GRCGYC | 3 cut(s) | 135, 159, 1985 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2668 |
| BstAUI | TGTACA | 3 cut(s) | 1223, 3143, 4017 |
| BstBAI | YACGTR | 1 cut(s) | 3802 |
| BstBI | TTCGAA | 1 cut(s) | 2875 |
| BstDEI | CTNAG | 9 cut(s) | 190, 887, 2117, 2393, 2435, 2615, 3420, 3927, 3974 |
| BstDSI | CCRYGG | 2 cut(s) | 174, 2002 |
| BstEII | GGTNACC | 2 cut(s) | 1235, 3075 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2567 |
| BstH2I | RGCGCY | 1 cut(s) | 1988 |
| BstHHI | GCGC | 3 cut(s) | 56, 563, 1987 |
| BstMAI | GTCTC | 6 cut(s) | 883, 907, 1937, 2039, 3479, 3972 |
| BstNI | CCWGG | 9 cut(s) | 1372, 1422, 1498, 1627, 1756, 1989, 2241, 2302, 3153 |
| BstNSI | RCATGY | 7 cut(s) | 1214, 2234, 2765, 3539, 3602, 3713, 4024 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1314 |
| BstPI | GGTNACC | 2 cut(s) | 1235, 3075 |
| BstSFI | CTRYAG | 2 cut(s) | 968, 3912 |
| BstSLI | GKGCMC | 5 cut(s) | 330, 351, 2388, 2418, 3922 |
| BstX2I | RGATCY | 6 cut(s) | 82, 500, 788, 2992, 3238, 3280 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2865 |
| BstYI | RGATCY | 6 cut(s) | 82, 500, 788, 2992, 3238, 3280 |
| Bsu15I | ATCGAT | 2 cut(s) | 390, 4028 |
| BsuI | GTATCC | 1 cut(s) | 667 |
| BsuRI | GGCC | 9 cut(s) | 899, 1585, 2239, 2300, 2355, 2620, 3226, 3626, 3687 |
| BsuTUI | ATCGAT | 2 cut(s) | 390, 4028 |
| BtgI | CCRYGG | 2 cut(s) | 174, 2002 |
| BtgZI | GCGATG | 1 cut(s) | 496 |
| BtsI | GCAGTG | 1 cut(s) | 1482 |
| BveI | ACCTGC | 1 cut(s) | 884 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1457, 2942 |
| CciI | TCATGA | 2 cut(s) | 1384, 1968 |
| CfoI | GCGC | 3 cut(s) | 56, 563, 1987 |
| Cfr13I | GGNCC | 3 cut(s) | 1424, 2353, 3685 |
| ClaI | ATCGAT | 2 cut(s) | 390, 4028 |
| CseI | GACGC | 1 cut(s) | 148 |
| Csp6I | GTAC | 6 cut(s) | 1009, 1208, 1224, 3144, 3825, 4018 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 987, 1022, 3783, 3818 |
| CviQI | GTAC | 6 cut(s) | 1009, 1208, 1224, 3144, 3825, 4018 |
| DdeI | CTNAG | 9 cut(s) | 190, 887, 2117, 2393, 2435, 2615, 3420, 3927, 3974 |
| DinI | GGCGCC | 1 cut(s) | 1986 |
| DraI | TTTAAA | 2 cut(s) | 3463, 3885 |
| DriI | GACNNNNNGTC | 1 cut(s) | 13 |
| EaeI | YGGCCR | 2 cut(s) | 897, 3624 |
| Eam1104I | CTCTTC | 4 cut(s) | 251, 2038, 3828, 3885 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 13 |
| EarI | CTCTTC | 4 cut(s) | 251, 2038, 3828, 3885 |
| EciI | GGCGGA | 1 cut(s) | 1672 |
| Ecl136II | GAGCTC | 1 cut(s) | 521 |
| Eco130I | CCWWGG | 2 cut(s) | 1586, 2002 |
| Eco147I | AGGCCT | 3 cut(s) | 1585, 2239, 2620 |
| Eco24I | GRGCYC | 2 cut(s) | 523, 1131 |
| Eco31I | GGTCTC | 1 cut(s) | 2039 |
| Eco32I | GATATC | 1 cut(s) | 807 |
| Eco47I | GGWCC | 1 cut(s) | 1424 |
| Eco53kI | GAGCTC | 1 cut(s) | 521 |
| Eco57I | CTGAAG | 2 cut(s) | 1047, 1767 |
| Eco72I | CACGTG | 1 cut(s) | 3802 |
| Eco88I | CYCGRG | 1 cut(s) | 496 |
| Eco91I | GGTNACC | 2 cut(s) | 1235, 3075 |
| EcoICRI | GAGCTC | 1 cut(s) | 521 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2567 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2353 |
| EcoO65I | GGTNACC | 2 cut(s) | 1235, 3075 |
| EcoRI | GAATTC | 1 cut(s) | 1321 |
| EcoRII | CCWGG | 9 cut(s) | 1370, 1420, 1496, 1625, 1754, 1987, 2239, 2300, 3151 |
| EcoRV | GATATC | 1 cut(s) | 807 |
| EcoT14I | CCWWGG | 2 cut(s) | 1586, 2002 |
| EcoT22I | ATGCAT | 1 cut(s) | 920 |
| EcoT38I | GRGCYC | 2 cut(s) | 523, 1131 |
| EgeI | GGCGCC | 1 cut(s) | 1986 |
| EheI | GGCGCC | 1 cut(s) | 1986 |
| ErhI | CCWWGG | 2 cut(s) | 1586, 2002 |
| Esp3I | CGTCTC | 1 cut(s) | 907 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1880, 1912 |
| FaqI | GGGAC | 3 cut(s) | 1322, 2318, 3749 |
| FauI | CCCGC | 3 cut(s) | 95, 119, 268 |
| FauNDI | CATATG | 1 cut(s) | 617 |
| FbaI | TGATCA | 1 cut(s) | 2203 |
| FriOI | GRGCYC | 2 cut(s) | 523, 1131 |
| GlaI | GCGC | 3 cut(s) | 55, 562, 1986 |
| GsaI | CCCAGC | 3 cut(s) | 2610, 2922, 3582 |
| GsuI | CTGGAG | 3 cut(s) | 438, 3360, 3866 |
| HaeII | RGCGCY | 1 cut(s) | 1988 |
| HaeIII | GGCC | 9 cut(s) | 899, 1585, 2239, 2300, 2355, 2620, 3226, 3626, 3687 |
| HapII | CCGG | 6 cut(s) | 80, 206, 269, 504, 516, 1131 |
| HgaI | GACGC | 1 cut(s) | 148 |
| HhaI | GCGC | 3 cut(s) | 56, 563, 1987 |
| Hin1I | GRCGYC | 3 cut(s) | 135, 159, 1985 |
| Hin6I | GCGC | 3 cut(s) | 54, 561, 1985 |
| HinP1I | GCGC | 3 cut(s) | 54, 561, 1985 |
| HincII | GTYRAC | 4 cut(s) | 1216, 1908, 2531, 3297 |
| HindII | GTYRAC | 4 cut(s) | 1216, 1908, 2531, 3297 |
| HindIII | AAGCTT | 2 cut(s) | 1661, 2574 |
| HpaII | CCGG | 6 cut(s) | 80, 206, 269, 504, 516, 1131 |
| HphI | GGTGA | 5 cut(s) | 1247, 1280, 2003, 2127, 2957 |
| Hpy99I | CGWCG | 4 cut(s) | 19, 22, 137, 164 |
| HpyAV | CCTTC | 8 cut(s) | 1535, 1585, 1778, 2292, 2366, 2573, 2636, 2841 |
| HpyCH4IV | ACGT | 7 cut(s) | 14, 135, 639, 2106, 2259, 2653, 3801 |
| HpyF3I | CTNAG | 9 cut(s) | 190, 887, 2117, 2393, 2435, 2615, 3420, 3927, 3974 |
| HpySE526I | ACGT | 7 cut(s) | 14, 135, 639, 2106, 2259, 2653, 3801 |
| Hsp92I | GRCGYC | 3 cut(s) | 135, 159, 1985 |
| HspAI | GCGC | 3 cut(s) | 54, 561, 1985 |
| KasI | GGCGCC | 1 cut(s) | 1984 |
| Ksp22I | TGATCA | 1 cut(s) | 2203 |
| LguI | GCTCTTC | 1 cut(s) | 3828 |
| MaeII | ACGT | 7 cut(s) | 14, 135, 639, 2106, 2259, 2653, 3801 |
| MbiI | CCGCTC | 1 cut(s) | 1509 |
| MfeI | CAATTG | 2 cut(s) | 468, 3828 |
| MflI | RGATCY | 6 cut(s) | 82, 500, 788, 2992, 3238, 3280 |
| MlsI | TGGCCA | 1 cut(s) | 3626 |
| MluNI | TGGCCA | 1 cut(s) | 3626 |
| Mly113I | GGCGCC | 1 cut(s) | 1985 |
| MlyI | GAGTC | 8 cut(s) | 173, 209, 429, 773, 1616, 2406, 2854, 3472 |
| MmeI | TCCRAC | 4 cut(s) | 51, 156, 2468, 2531 |
| Mox20I | TGGCCA | 1 cut(s) | 3626 |
| Mph1103I | ATGCAT | 1 cut(s) | 920 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2952 |
| MscI | TGGCCA | 1 cut(s) | 3626 |
| MslI | CAYNNNNRTG | 4 cut(s) | 341, 1233, 1979, 3534 |
| Msp20I | TGGCCA | 1 cut(s) | 3626 |
| MspA1I | CMGCKG | 3 cut(s) | 576, 1314, 1457 |
| MspI | CCGG | 6 cut(s) | 80, 206, 269, 504, 516, 1131 |
| MunI | CAATTG | 2 cut(s) | 468, 3828 |
| Mva1269I | GAATGC | 2 cut(s) | 1717, 4009 |
| MvaI | CCWGG | 9 cut(s) | 1372, 1422, 1498, 1627, 1756, 1989, 2241, 2302, 3153 |
| NarI | GGCGCC | 1 cut(s) | 1985 |
| NciI | CCSGG | 4 cut(s) | 80, 206, 269, 1131 |
| NcoI | CCATGG | 1 cut(s) | 2002 |
| NdeI | CATATG | 1 cut(s) | 617 |
| NheI | GCTAGC | 1 cut(s) | 3602 |
| NlaIV | GGNNCC | 9 cut(s) | 84, 109, 266, 508, 1807, 1986, 2354, 3282, 3726 |
| NmeAIII | GCCGAG | 2 cut(s) | 1913, 3976 |
| NmuCI | GTSAC | 5 cut(s) | 67, 635, 773, 1235, 3703 |
| NsiI | ATGCAT | 1 cut(s) | 920 |
| NspI | RCATGY | 7 cut(s) | 1214, 2234, 2765, 3539, 3602, 3713, 4024 |
| NspV | TTCGAA | 1 cut(s) | 2875 |
| OliI | CACNNNNGTG | 1 cut(s) | 1979 |
| PaeI | GCATGC | 1 cut(s) | 3602 |
| PagI | TCATGA | 2 cut(s) | 1384, 1968 |
| PceI | AGGCCT | 3 cut(s) | 1585, 2239, 2620 |
| PciI | ACATGT | 3 cut(s) | 1210, 3535, 3709 |
| PciSI | GCTCTTC | 1 cut(s) | 3828 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 3772, 3928 |
| PctI | GAATGC | 2 cut(s) | 1717, 4009 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2952 |
| PfeI | GAWTC | 7 cut(s) | 622, 1343, 2144, 2587, 2611, 2854, 3431 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 364, 1247 |
| PfoI | TCCNGGA | 1 cut(s) | 1420 |
| PleI | GAGTC | 8 cut(s) | 173, 209, 428, 773, 1616, 2405, 2853, 3472 |
| PluTI | GGCGCC | 1 cut(s) | 1988 |
| PmaCI | CACGTG | 1 cut(s) | 3802 |
| PmlI | CACGTG | 1 cut(s) | 3802 |
| PpsI | GAGTC | 8 cut(s) | 173, 209, 428, 773, 1616, 2405, 2853, 3472 |
| Ppu21I | YACGTR | 1 cut(s) | 3802 |
| PscI | ACATGT | 3 cut(s) | 1210, 3535, 3709 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1314 |
| PshBI | ATTAAT | 1 cut(s) | 2810 |
| PsiI | TTATAA | 1 cut(s) | 1617 |
| Psp124BI | GAGCTC | 1 cut(s) | 523 |
| Psp6I | CCWGG | 9 cut(s) | 1370, 1420, 1496, 1625, 1754, 1987, 2239, 2300, 3151 |
| PspCI | CACGTG | 1 cut(s) | 3802 |
| PspEI | GGTNACC | 2 cut(s) | 1235, 3075 |
| PspFI | CCCAGC | 3 cut(s) | 2606, 2918, 3578 |
| PspGI | CCWGG | 9 cut(s) | 1370, 1420, 1496, 1625, 1754, 1987, 2239, 2300, 3151 |
| PspN4I | GGNNCC | 9 cut(s) | 84, 109, 266, 508, 1807, 1986, 2354, 3282, 3726 |
| PspPI | GGNCC | 3 cut(s) | 1424, 2353, 3685 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1457, 2942 |
| PsuI | RGATCY | 6 cut(s) | 82, 500, 788, 2992, 3238, 3280 |
| PvuII | CAGCTG | 1 cut(s) | 1457 |
| RsaI | GTAC | 6 cut(s) | 1010, 1209, 1225, 3145, 3826, 4019 |
| RsaNI | GTAC | 6 cut(s) | 1009, 1208, 1224, 3144, 3825, 4018 |
| RseI | CAYNNNNRTG | 4 cut(s) | 341, 1233, 1979, 3534 |
| SacI | GAGCTC | 1 cut(s) | 523 |
| SapI | GCTCTTC | 1 cut(s) | 3828 |
| Sau96I | GGNCC | 3 cut(s) | 1424, 2353, 3685 |
| SchI | GAGTC | 8 cut(s) | 173, 209, 429, 773, 1616, 2406, 2854, 3472 |
| SfcI | CTRYAG | 2 cut(s) | 968, 3912 |
| SfoI | GGCGCC | 1 cut(s) | 1986 |
| SfuI | TTCGAA | 1 cut(s) | 2875 |
| SinI | GGWCC | 1 cut(s) | 1424 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 341, 1233, 1979, 3534 |
| SmlI | CTYRAG | 5 cut(s) | 1504, 2428, 2555, 3480, 3524 |
| SmoI | CTYRAG | 5 cut(s) | 1504, 2428, 2555, 3480, 3524 |
| SphI | GCATGC | 1 cut(s) | 3602 |
| SseBI | AGGCCT | 3 cut(s) | 1585, 2239, 2620 |
| SspDI | GGCGCC | 1 cut(s) | 1984 |
| SspI | AATATT | 3 cut(s) | 829, 2019, 3026 |
| SstI | GAGCTC | 1 cut(s) | 523 |
| StuI | AGGCCT | 3 cut(s) | 1585, 2239, 2620 |
| StyI | CCWWGG | 2 cut(s) | 1586, 2002 |
| TaiI | ACGT | 7 cut(s) | 17, 138, 642, 2109, 2262, 2656, 3804 |
| TaqI | TCGA | 8 cut(s) | 390, 453, 529, 1489, 2875, 3114, 3199, 4028 |
| TatI | WGTACW | 4 cut(s) | 1008, 1223, 3143, 4017 |
| TauI | GCSGC | 4 cut(s) | 45, 1512, 2800, 3045 |
| TfiI | GAWTC | 7 cut(s) | 622, 1343, 2144, 2587, 2611, 2854, 3431 |
| TseFI | GTSAC | 5 cut(s) | 67, 635, 773, 1235, 3703 |
| Tsp45I | GTSAC | 5 cut(s) | 67, 635, 773, 1235, 3703 |
| TspGWI | ACGGA | 1 cut(s) | 686 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 364, 1247 |
| VneI | GTGCAC | 3 cut(s) | 326, 347, 2384 |
| VpaK11BI | GGWCC | 1 cut(s) | 1424 |
| VspI | ATTAAT | 1 cut(s) | 2810 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2567 |
| XapI | RAATTY | 8 cut(s) | 120, 708, 1321, 1876, 2194, 2220, 3362, 3991 |
| XbaI | TCTAGA | 2 cut(s) | 758, 2989 |
| XceI | RCATGY | 7 cut(s) | 1214, 2234, 2765, 3539, 3602, 3713, 4024 |
| XmaJI | CCTAGG | 1 cut(s) | 1586 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2952 |
| ZraI | GACGTC | 1 cut(s) | 136 |
| Zsp2I | ATGCAT | 1 cut(s) | 920 |