Rh1CG059700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0009424
Physical Location & Seq
Forward (+)
11745968 .. 11748183
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG059700.1

Sequence Viewer

Length: 1206 bp
ATGGACGACGACGCAACGACGTCGTTCGCCGGCCACAAGCTCTGCGGCTTCCTCTACGCCGTTCTCGCCGTCACTTCCCCGGCGGACCCACCCGACCTCCCCTTCGGAACGCGCTTCCGCGCAGCTCCCGACGTCAGTTTCAAATCCCAAAACGACGTCGCCGTCGTCCTATCGCCGGTGCCGGAAAACTCCTCTGATTCGGAGCAATGCGAGGGGGAATTGGGGAGGAAGACGAGGATGAGGAAGAGGAGTATAGGGCTGGTGAATGGGAGCATAAGCGTGGTGCACCAGCTTCACGCTTTGGTGATGAACAAGTGCATCAAGATCGATGCTTTGTTGGTTCGGGTTGAGGCCGCCGGCGTCGGTGGGCAACAACTCAGGGCTGTGCTGCTGGTTGATGTCTATCTTCCGATTGAGTTATGGTGTGGTTGGCAGTTTCCGAAATCGGGGTCTATTGCCGGTGCTCTGTTTCGACACTTGAGGCTCTTATGTAGAAGATGCTTACTTTTAGGGATGTTGTCTGATTCTGATTTACCAAAAGTTGAGAATCTCTATGTCTTCCACCCAATTCTAACAACTTCAAGAACATCATTTTGCAGTTCTGACTGGGGGGAGAGAAGTGCAATGCTGGCTGACAAAGATTATCTTGAAAATAATCTAGGAGGTGGCAGAAACATATGGAATCTTTCTGACTGTCATAGACAGGAAACCCTAGTTCTGCTAGAATACAACCAGTTGATGACTCCTGTAAAGCTGGTAGCAGTTGAATGGATGCTTCAACGTGAGAAAAAGGCTAAAGTTTTGCCCCATCCATTGTATCTGGCTTTCTCAATTGAAGATGGATTTTCTTTCTGTATTAACACTATATCTGGAGAAATTGTCACTGGCGAAGCTCCCACTATCAGTGATTTTCATGGGGGAATGTTCTGTGATGAACCTGGACTAGGAAAGACCATAACTGCTCTTTCACTGATTCTGAAGACACAAGGAACTCTGGCAACTCCTCCAGATGGGGTACAAGTGAATTGGTGTACACATAATGGAGACCAGAAATGTGGGTATTATGAGCTTGATGGTGATGATGTGGCTGGTAGTAGTATGCTCCCAATAAAGAGGGACATGGGTCAGGAAGCTCAAAATGGTCTTGGCGATTCCAAATACTGCCGATCTAAAAGAGATTCACCAATTCATGTCCCGGCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like Helicase_C SNF2_N zf-CW

Protein Analysis

401

Amino Acids

44.01

Weight (kDa)

5.95

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 254 - 347 1.2e-08 SNF2-related domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AatII GACGTC 3 cut(s) 23, 135, 159
AccB1I GGYRCC 1 cut(s) 178
AccII CGCG 2 cut(s) 112, 120
AciI CCGC 4 cut(s) 45, 83, 118, 354
AcoI YGGCCR 1 cut(s) 31
AcuI CTGAAG 1 cut(s) 998
AcyI GRCGYC 4 cut(s) 20, 132, 156, 360
AfaI GTAC 2 cut(s) 1017, 1033
AfiI CCNNNNNNNGG 4 cut(s) 175, 446, 944, 1010
AgsI TTSAA 6 cut(s) 142, 582, 650, 767, 779, 836
AjnI CCWGG 1 cut(s) 937
AluBI AGCT 7 cut(s) 40, 125, 292, 754, 893, 1069, 1133
AluI AGCT 7 cut(s) 40, 125, 292, 754, 893, 1069, 1133
Alw21I GWGCWC 2 cut(s) 288, 466
Alw26I GTCTC 1 cut(s) 1038
Alw44I GTGCAC 1 cut(s) 284
AoxI GGCC 2 cut(s) 31, 351
ApaLI GTGCAC 1 cut(s) 284
ApeKI GCWGC 2 cut(s) 122, 388
ArsI GACNNNNNNTTYG 4 cut(s) 86, 118, 434, 466
AspLEI GCGC 2 cut(s) 114, 122
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 2 cut(s) 80, 1196
AsuHPI GGTGA 4 cut(s) 274, 316, 1088, 1173
AvaII GGWCC 1 cut(s) 85
BaeGI GKGCMC 1 cut(s) 288
BanI GGYRCC 1 cut(s) 178
BbsI GAAGAC 3 cut(s) 236, 550, 986
Bbv12I GWGCWC 2 cut(s) 288, 466
BbvI GCAGC 2 cut(s) 134, 375
BccI CCATC 4 cut(s) 816, 833, 1004, 1067
BceAI ACGGC 3 cut(s) 44, 53, 146
BcgI CGANNNNNNTGC 3 cut(s) 37, 307, 341
BciT130I CCWGG 1 cut(s) 939
BcnI CCSGG 2 cut(s) 80, 1196
BcoDI GTCTC 1 cut(s) 1038
BfaI CTAG 4 cut(s) 659, 713, 722, 944
BisI GCNGC 4 cut(s) 46, 123, 354, 389
BlsI GCNGC 4 cut(s) 47, 124, 355, 390
Bme1390I CCNGG 3 cut(s) 80, 939, 1196
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 2 cut(s) 87, 180
BmrFI CCNGG 3 cut(s) 80, 939, 1196
BmrI ACTGGG 1 cut(s) 616
BmsI GCATC 4 cut(s) 319, 327, 488, 762
BmuI ACTGGG 1 cut(s) 616
BoxI GACNNNNGTC 1 cut(s) 1122
BpiI GAAGAC 3 cut(s) 236, 550, 986
BpmI CTGGAG 2 cut(s) 891, 990
BpuEI CTTGAG 1 cut(s) 499
BpuMI CCSGG 2 cut(s) 80, 1196
Bsa29I ATCGAT 1 cut(s) 327
BsaBI GATNNNNATC 1 cut(s) 402
BsaHI GRCGYC 4 cut(s) 20, 132, 156, 360
BsaI GGTCTC 1 cut(s) 1038
BsaJI CCNNGG 1 cut(s) 78
BsaXI ACNNNNNCTCC 4 cut(s) 81, 111, 864, 894
Bsc4I CCNNNNNNNGG 4 cut(s) 175, 446, 944, 1010
Bse118I RCCGGY 4 cut(s) 29, 175, 356, 458
Bse1I ACTGG 3 cut(s) 611, 733, 889
Bse3DI GCAATG 2 cut(s) 212, 630
Bse8I GATNNNNATC 1 cut(s) 402
BseBI CCWGG 1 cut(s) 939
BseCI ATCGAT 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 4 cut(s) 243, 519, 777, 808
BseJI GATNNNNATC 1 cut(s) 402
BseLI CCNNNNNNNGG 4 cut(s) 175, 446, 944, 1010
BseMI GCAATG 2 cut(s) 212, 630
BseMII CTCAG 1 cut(s) 391
BseNI ACTGG 3 cut(s) 611, 733, 889
BseRI GAGGAG 3 cut(s) 181, 262, 993
BseSI GKGCMC 1 cut(s) 288
BseXI GCAGC 2 cut(s) 134, 375
Bsh1236I CGCG 2 cut(s) 112, 120
BshFI GGCC 2 cut(s) 33, 353
BshNI GGYRCC 1 cut(s) 178
BshVI ATCGAT 1 cut(s) 327
BsiHKAI GWGCWC 2 cut(s) 288, 466
BsiSI CCGG 7 cut(s) 30, 80, 176, 182, 357, 459, 1196
BslFI GGGAC 2 cut(s) 1130, 1178
BslI CCNNNNNNNGG 4 cut(s) 175, 446, 944, 1010
BsmAI GTCTC 1 cut(s) 1038
BsmFI GGGAC 2 cut(s) 1130, 1178
BsnI GGCC 2 cut(s) 33, 353
Bso31I GGTCTC 1 cut(s) 1038
Bsp1286I GDGCHC 2 cut(s) 288, 466
Bsp1407I TGTACA 1 cut(s) 1031
Bsp143I GATC 2 cut(s) 324, 1166
BspACI CCGC 4 cut(s) 45, 83, 118, 354
BspANI GGCC 2 cut(s) 33, 353
BspCNI CTCAG 1 cut(s) 390
BspDI ATCGAT 1 cut(s) 327
BspFNI CGCG 2 cut(s) 112, 120
BspLI GGNNCC 2 cut(s) 87, 180
BspT107I GGYRCC 1 cut(s) 178
BspTNI GGTCTC 1 cut(s) 1038
BsrDI GCAATG 2 cut(s) 212, 630
BsrFI RCCGGY 4 cut(s) 29, 175, 356, 458
BsrGI TGTACA 1 cut(s) 1031
BsrI ACTGG 3 cut(s) 611, 733, 889
BssAI RCCGGY 4 cut(s) 29, 175, 356, 458
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 2 cut(s) 324, 1166
BssNI GRCGYC 4 cut(s) 20, 132, 156, 360
Bst2UI CCWGG 1 cut(s) 939
Bst4CI ACNGT 1 cut(s) 695
Bst6I CTCTTC 1 cut(s) 239
BstACI GRCGYC 4 cut(s) 20, 132, 156, 360
BstAUI TGTACA 1 cut(s) 1031
BstC8I GCNNGC 3 cut(s) 31, 358, 630
BstDEI CTNAG 1 cut(s) 377
BstENI CCTNNNNNAGG 1 cut(s) 942
BstF5I GGATG 4 cut(s) 243, 519, 777, 808
BstFNI CGCG 2 cut(s) 112, 120
BstHHI GCGC 2 cut(s) 114, 122
BstKTI GATC 2 cut(s) 327, 1169
BstMAI GTCTC 1 cut(s) 1038
BstMBI GATC 2 cut(s) 324, 1166
BstMWI GCNNNNNNNGC 2 cut(s) 65, 629
BstNI CCWGG 1 cut(s) 939
BstPAI GACNNNNGTC 1 cut(s) 1122
BstSCI CCNGG 3 cut(s) 78, 937, 1194
BstSLI GKGCMC 1 cut(s) 288
BstUI CGCG 2 cut(s) 112, 120
BstV1I GCAGC 2 cut(s) 134, 375
BstV2I GAAGAC 3 cut(s) 236, 550, 986
BstXI CCANNNNNNTGG 1 cut(s) 1055
Bsu15I ATCGAT 1 cut(s) 327
BsuRI GGCC 2 cut(s) 33, 353
BsuTUI ATCGAT 1 cut(s) 327
BtsCI GGATG 4 cut(s) 243, 519, 777, 808
BtsIMutI CAGTG 3 cut(s) 882, 910, 968
Cac8I GCNNGC 3 cut(s) 31, 358, 630
CfoI GCGC 2 cut(s) 114, 122
Cfr10I RCCGGY 4 cut(s) 29, 175, 356, 458
Cfr13I GGNCC 1 cut(s) 85
ClaI ATCGAT 1 cut(s) 327
CseI GACGC 2 cut(s) 20, 349
Csp6I GTAC 2 cut(s) 1016, 1032
CviAII CATG 3 cut(s) 914, 1120, 1190
CviQI GTAC 2 cut(s) 1016, 1032
DdeI CTNAG 1 cut(s) 377
DpnI GATC 2 cut(s) 326, 1168
DpnII GATC 2 cut(s) 324, 1166
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
EaeI YGGCCR 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
EciI GGCGGA 1 cut(s) 98
Eco31I GGTCTC 1 cut(s) 1038
Eco47I GGWCC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 998
EcoNI CCTNNNNNAGG 1 cut(s) 942
EcoRII CCWGG 1 cut(s) 937
FaeI CATG 3 cut(s) 917, 1123, 1193
FalI AAGNNNNNCTT 2 cut(s) 630, 662
FaqI GGGAC 2 cut(s) 1130, 1178
FatI CATG 3 cut(s) 913, 1119, 1189
FauNDI CATATG 1 cut(s) 677
Fnu4HI GCNGC 4 cut(s) 46, 123, 354, 389
FokI GGATG 4 cut(s) 250, 526, 784, 795
Fsp4HI GCNGC 4 cut(s) 46, 123, 354, 389
FspBI CTAG 4 cut(s) 659, 713, 722, 944
GlaI GCGC 2 cut(s) 113, 121
GluI GCNGC 4 cut(s) 46, 123, 354, 389
GsuI CTGGAG 2 cut(s) 891, 990
HaeIII GGCC 2 cut(s) 33, 353
HapII CCGG 7 cut(s) 30, 80, 176, 182, 357, 459, 1196
HgaI GACGC 2 cut(s) 20, 349
HhaI GCGC 2 cut(s) 114, 122
Hin1I GRCGYC 4 cut(s) 20, 132, 156, 360
Hin1II CATG 3 cut(s) 917, 1123, 1193
Hin6I GCGC 2 cut(s) 112, 120
HinP1I GCGC 2 cut(s) 112, 120
HinfI GANTC 8 cut(s) 197, 524, 547, 682, 742, 973, 1151, 1178
HpaII CCGG 7 cut(s) 30, 80, 176, 182, 357, 459, 1196
HphI GGTGA 4 cut(s) 274, 316, 1088, 1173
Hpy166II GTNNAC 3 cut(s) 286, 1032, 1034
Hpy188III TCNNGA 7 cut(s) 128, 322, 582, 647, 870, 1007, 1127
Hpy8I GTNNAC 3 cut(s) 286, 1032, 1034
Hpy99I CGWCG 9 cut(s) 11, 14, 22, 25, 134, 158, 161, 167, 365
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 1 cut(s) 695
HpyCH4IV ACGT 4 cut(s) 20, 132, 156, 781
HpyCH4V TGCA 4 cut(s) 286, 318, 597, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 629
HpyF3I CTNAG 1 cut(s) 377
HpySE526I ACGT 4 cut(s) 20, 132, 156, 781
Hsp92I GRCGYC 4 cut(s) 20, 132, 156, 360
Hsp92II CATG 3 cut(s) 917, 1123, 1193
HspAI GCGC 2 cut(s) 112, 120
KroI GCCGGC 2 cut(s) 29, 356
KroNI GCCGGC 2 cut(s) 31, 358
Kzo9I GATC 2 cut(s) 324, 1166
LmnI GCTCC 5 cut(s) 130, 202, 270, 898, 1107
Lsp1109I GCAGC 2 cut(s) 134, 375
LweI GCATC 4 cut(s) 319, 327, 488, 762
MaeI CTAG 4 cut(s) 659, 713, 722, 944
MaeII ACGT 4 cut(s) 20, 132, 156, 781
MaeIII GTNAC 2 cut(s) 70, 880
MalI GATC 2 cut(s) 326, 1168
MboI GATC 2 cut(s) 324, 1166
MboII GAAGA 7 cut(s) 241, 256, 398, 507, 550, 848, 991
MfeI CAATTG 1 cut(s) 831
MhlI GDGCHC 2 cut(s) 288, 466
MluCI AATT 6 cut(s) 218, 567, 831, 876, 1024, 1185
MlyI GAGTC 1 cut(s) 736
MreI CGCCGGCG 1 cut(s) 356
MroNI GCCGGC 2 cut(s) 29, 356
MseI TTAA 1 cut(s) 858
MslI CAYNNNNRTG 1 cut(s) 278
MspI CCGG 7 cut(s) 30, 80, 176, 182, 357, 459, 1196
MspR9I CCNGG 3 cut(s) 80, 939, 1196
MunI CAATTG 1 cut(s) 831
MvaI CCWGG 1 cut(s) 939
MvnI CGCG 2 cut(s) 112, 120
MwoI GCNNNNNNNGC 2 cut(s) 65, 629
NaeI GCCGGC 2 cut(s) 31, 358
NciI CCSGG 2 cut(s) 80, 1196
NdeI CATATG 1 cut(s) 677
NdeII GATC 2 cut(s) 324, 1166
NgoMIV GCCGGC 2 cut(s) 29, 356
NlaIII CATG 3 cut(s) 917, 1123, 1193
NlaIV GGNNCC 2 cut(s) 87, 180
NmuCI GTSAC 2 cut(s) 70, 880
PcsI WCGNNNNNNNCGW 2 cut(s) 159, 162
PdiI GCCGGC 2 cut(s) 31, 358
PfeI GAWTC 7 cut(s) 197, 524, 547, 682, 973, 1151, 1178
PkrI GCNGC 4 cut(s) 47, 124, 355, 390
PleI GAGTC 1 cut(s) 736
PpsI GAGTC 1 cut(s) 736
PshAI GACNNNNGTC 1 cut(s) 1122
Psp6I CCWGG 1 cut(s) 937
PspGI CCWGG 1 cut(s) 937
PspN4I GGNNCC 2 cut(s) 87, 180
PspPI GGNCC 1 cut(s) 85
RsaI GTAC 2 cut(s) 1017, 1033
RsaNI GTAC 2 cut(s) 1016, 1032
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 1 cut(s) 858
SatI GCNGC 4 cut(s) 46, 123, 354, 389
Sau3AI GATC 2 cut(s) 324, 1166
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 1 cut(s) 736
ScrFI CCNGG 3 cut(s) 80, 939, 1196
SduI GDGCHC 2 cut(s) 288, 466
SfaNI GCATC 4 cut(s) 319, 327, 488, 762
SgrAI CRCCGGYG 2 cut(s) 175, 356
SinI GGWCC 1 cut(s) 85
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 478
SmoI CTYRAG 1 cut(s) 478
Sse9I AATT 6 cut(s) 218, 567, 831, 876, 1024, 1185
SsiI CCGC 4 cut(s) 45, 83, 118, 354
SspMI CTAG 4 cut(s) 659, 713, 722, 944
StyD4I CCNGG 3 cut(s) 78, 937, 1194
TaaI ACNGT 1 cut(s) 695
TaiI ACGT 4 cut(s) 23, 135, 159, 784
TaqI TCGA 2 cut(s) 327, 472
TasI AATT 6 cut(s) 218, 567, 831, 876, 1024, 1185
TatI WGTACW 1 cut(s) 1031
TauI GCSGC 2 cut(s) 48, 356
TfiI GAWTC 7 cut(s) 197, 524, 547, 682, 973, 1151, 1178
Tru1I TTAA 1 cut(s) 858
Tru9I TTAA 1 cut(s) 858
TscAI CASTG 3 cut(s) 889, 910, 975
TseFI GTSAC 2 cut(s) 70, 880
TseI GCWGC 2 cut(s) 122, 388
Tsp45I GTSAC 2 cut(s) 70, 880
TspDTI ATGAA 4 cut(s) 323, 902, 948, 1178
TspRI CASTG 3 cut(s) 889, 910, 975
VneI GTGCAC 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 85
XagI CCTNNNNNAGG 1 cut(s) 942
XspI CTAG 4 cut(s) 659, 713, 722, 944
ZraI GACGTC 3 cut(s) 21, 133, 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.