Rh1CG060300

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
11981681 .. 11988816
7136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG060300.1

Sequence Viewer

Length: 3717 bp
ATGGACGACGACGCAACGACGTCGTTCGCCGGCCACAAGCTCTGCGGCTTCCTCTACGCCGTTCTCGCCGTCACTTCCCCGGCGGACCCACCCGACCTCCCCTTCGGAACGCGCTTCCGCGCAGCTCCCGACGTCAGTTTCAAATCCCAAAACGACGACGCCGTCGTCCTCTCGCCGGTGCCGGAAAACTCCTCTGATTCGGAGCAATGCGAGGGGGAATTGGGGAGGAAGACGAGGACGAGGAAGAGGAGTATAGGGCTGGTGAATGGGAGCATAAGCGTGGTGCACCAGCTTCACGCTTTGGTGATGAACAAGTGCATCAAGATCGATGCTTTGTTGGTTCGGGTTGAGGCCGCCGGCGTCGGTGGGCAACAACTCAGGGCTGTGCTGCTGGTTGATGTCTATCTTCCGATTGAGTTATGGTGTGGTTGGCAGTTTCCGAAATCGGGGTCTATTGCCGGTGCTCTGTTTCGACACTTGAGTTCTGACTGGGGGGAGAGAAGTGCAATGCTGGCTGACAAAGATTATCTTGAAAATAATCTAGGAGGTGGCAGAAACATATGGAATCTTTCTGACTGTCATGTTTTTGGTTGCAAACTGCATCATAATTTCACTGATTCTTCAAAGAAGAAGCTATTTGAGCTTCATGAAATTTTTAAGAGTTTACCTAGTGTGGCAGAGACAGGAAACCCTAGTTCTGCTAGAATACAACCAGTTGATGGCTCCTGTAAAGCTGGTATTTGGGATATATCTGATGACATATTACTAAATATCCTAGCTACACTCAACCCAATGGACCTTGTTAGGGTGTCTGCAACTTGTTGCCATTTGAGAACCTTGGCTGTCTCAATCATGCCATGCATGAAACTTAAGTTGTTTCCTCATCAGCAGGTAGCAGTTGAATGGATGCTTCAACGTGAGAAAAAGGCTAAAGTTTTGCCCCATCCATTGTATCTGGCTTTCTCAACTGAAGATGGATTTTCTTTCTGTATTAACACTATTTCTGGAGCAATTGTCACTGGCGAAGCTCCCACTATCAGTGATTTTCATGGGGGAATGTTCTGTGATGAACCTGGACTAGGAAAGACCATAACTGCTCTTTCACTGATTCTGAAGACACAAGGAACTCTGGCAACTCCTCCAGATGGGGTACAAGTGAATTGGTGTACACATAATGGAGACCAGAAATGTGGTTATTATGAGCTTGATGGTGATGACGTGGCTGGTAGTAGTATGCTCCCAATAAAGAGGGATATGGGTCAGAAAGCTCAAAATGGTCTTGGCGATTCCAAATACTGCCGATCTAAAAGAGCCAGGCTACTTCTTGATGAGCAAATTCCAGGATTCACCAATTCATGTCCCGGCAAATTAATGAAAACACCAGCAGCTGCATACTCTAATTCAGCAGTGTGTGTGGTTCGGTGCAGTAGGAGCTTAAGTGGCATAAAAAAAGATCTTCTGCCATCATTTCAAGGAGCATCCGGCTATCCCAAACAAACAAAGGCTGGAAAAAACTCGAGTAGATTGTCCAATGACACCTGGGTTCAGTGTGATGTATGCCGTAAGTGGCGGAAGCTTCCAGAAAGTAGTATTGCTGATGCTAGCGCGCCATGGTTCTGTAGCATGAATTCTGACCCTTTCTACCAGAGTTGTAGTGTTCCTGAAGAATCCTATGATAATTCCGAGCCAATAACGCATTTACTAGGGTTTTACACCAAGGGAACGGCTGGAGGGGAGGAACAAAATGTTTCTTTTTTCATTAGTGTGCTTAAGGAGAGGTATGCCTTGATAAATTCTATTACAAAGAAAGCCCTATCTTGGTTGGCTAAACTTTCTTCTGACCAGCTGTCAGTAATGGAGACAGTTGGTCTGCGAAGTCCTTTTGTAAGCTCTTGTGTAGAGTTGGGTGATGCCTATCCGTTTCAGGAATTATTTCAAGCATTTGGTCTCAAAAGAAGGGTAGAAAAGGGTGTTATTAAATGGTGTTACCCACGAAGTCTTAACAACATGAGTTTTGATGTTGCTGCTCTCAGAATTGCTCTATCTGTGCCATTGAACTCAGTGAGGCGGTATCTTTCAAGAGCAACTTTAATTGTTGTCCCATCAAATTTAGTTGATCACTGGGAAACGCAAATTAAGAAGCATGTCAGGCCTGGTCAGCTGCGAGTTTATGTGTGGAGTGACCATAAGAAGCCTTCTGCACACAGTCTGGCATGGGACTATGATGTTATCATAACAACATTCAGTCGTTTGAGTGCAGAGTGGGGCCCCCGTAAAAAAAGTGCACTGATGCAAGTGCATTGGCTTAGAGTCATGTTAGATGAGGGGCATACCCTTGGCTCAAGTCTTAGCTTGACAAACAAAATGCAAATGGCAGTTTCATTGATGGCTTCAAACCGTTGGATATTGACGGGAACTCCGACTCCTAATACACCCAATAGTCAACTATCACACCTTCAACCATTGCTCAAGTTCCTTCATGAGGAATCCTATGGGCGGAACTATAAGTCATGGGAAGCTGGGATTCTTAGGCCTTTTGAAGCAAAGATGGAAGAAGGACGATCACGTTTGTTGCATTTACTACATAGGTGCATGATTAGTGCTAGAAAGATAGATTTGCAGACTATTCCACCCTGCATCAAGAAAGCTACTTTTCTTGATTTTGCTGAGGAACATGCCAGAAGTTATAATGAATTGGTAGAGACAGTTAGGCGCAATATACTATTGGCTGACTGGAATGATGATTCTCATGTTGAGAGTCTTCTGAATCGAAAGCAGTGGAAATTTCGAAGTACAACTATCAAAAATGTTAGGCTATCTTGCTGTGTGGCCGGGCATATAAAAGTAACAGATGCTGGCGAAGATATTCAGGAAACAATGGATATTTTAGTTGAAAAGGGTCTACATCCCATGTCAGAGGAGTATGCTTTTATAAGATATAATATTCTTTATGGTGGCAACTGTGTCAGATGCAAGGAATGGTGTCGTTTACCTGTCATTACGCCGTGCAAGCATCTTTTGTGCCTCGACTGTGTTGGTTTGGACAGTCAGAGGTGTACTTACCCTGGCTGTGGCAACTTATATGAGATGGAAACTCCTGATACACTAACTCGGCCAGAAAATCCAAATCCTAAGTGGCCTGTTCCCAAGGATCTTATTGAGCTACAACCCTCGTATAAACAGGATGACTGGGATCCGGATTGGCAGTCAACATCTAGCAGTAAAGTCTCTTATCTGGTAAGGAGATTGAAAGCATTGCAGGAAGCTAATAGCAAAGTTGAATGCCCTTCAAATGATGAGAATAGTCCCATGGACACCAAAAATCTAATTTCCCTGCCTGAGATGGGTGATTCAAAAGAATTTATACAAGTTCATGGCTTTAGAAGGGATGCCAAGACTCAGGAAACAAATTTGGATAAAGTTTTGGTTTTTTCTCAATTTCTTGAGCATATCCATGTCATTGAGCAGCAGTTGACCATTGCTGGTATTAAATATGCTGGGATGTATAGTCCAATGCATTCTAGCAACAAGATGAAGTCACTGGCTACTTTCCAGAATGATGCTGGCTGCACAGTTCTTTTGATGGATGGAAGTGCTGCATTGGGTCTTGATTTGAGCTTTGTAACGCATGTATTTTTAATGGAACCAATATGGGACAGGAGGTTAGTGTCCTATTTTGGTAATAACATGTGCTTTTTATTATTTACCAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

1238

Amino Acids

138.48

Weight (kDa)

8.07

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 295 - 914 1e-66 SNF2-related domain
zf-CW PF07496 513 - 556 7.9e-16 CW-type Zinc Finger
Helicase_C PF00271 1137 - 1219 1.4e-06 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2688, 2933
AasI GACNNNNNNGTC 2 cut(s) 161, 164
AatII GACGTC 2 cut(s) 23, 135
Acc36I ACCTGC 1 cut(s) 880
AccB1I GGYRCC 1 cut(s) 178
AccB7I CCANNNNNTGG 1 cut(s) 719
AccI GTMKAC 1 cut(s) 2902
AccII CGCG 3 cut(s) 112, 120, 1607
AccIII TCCGGA 1 cut(s) 3196
AciI CCGC 7 cut(s) 45, 83, 118, 354, 1570, 2068, 2497
AclWI GGATC 3 cut(s) 3159, 3188, 3201
AcoI YGGCCR 3 cut(s) 31, 2829, 3113
AcsI RAATTY 9 cut(s) 651, 1335, 1627, 1792, 2107, 2783, 3359, 3409, 3711
AcuI CTGAAG 3 cut(s) 990, 1133, 1683
AcyI GRCGYC 4 cut(s) 20, 132, 159, 360
AfaI GTAC 4 cut(s) 1152, 1168, 2794, 3058
AflII CTTAAG 3 cut(s) 869, 1435, 1769
AflIII ACRYGT 1 cut(s) 3687
AhdI GACNNNNNGTC 2 cut(s) 1846, 1866
AjiI CACGTC 1 cut(s) 1219
AjnI CCWGG 6 cut(s) 1072, 1313, 1339, 1538, 2152, 3064
AloI GAACNNNNNNTCC 2 cut(s) 2407, 2439
Alw21I GWGCWC 3 cut(s) 288, 466, 2287
Alw26I GTCTC 7 cut(s) 674, 850, 1173, 1853, 1952, 2696, 3232
Alw44I GTGCAC 2 cut(s) 284, 2283
AlwI GGATC 3 cut(s) 3159, 3188, 3201
AlwNI CAGNNNCTG 2 cut(s) 1388, 2855
Ama87I CYCGRG 1 cut(s) 1516
Aor13HI TCCGGA 1 cut(s) 3196
AoxI GGCC 8 cut(s) 31, 351, 2150, 2266, 2531, 2829, 3113, 3137
ApaI GGGCCC 1 cut(s) 2270
ApaLI GTGCAC 2 cut(s) 284, 2283
ApeKI GCWGC 9 cut(s) 122, 388, 1385, 1388, 2024, 2161, 3466, 3567, 3596
ApoI RAATTY 9 cut(s) 651, 1335, 1627, 1792, 2107, 2783, 3359, 3409, 3711
ArsI GACNNNNNNTTYG 4 cut(s) 86, 118, 434, 466
AseI ATTAAT 1 cut(s) 1370
Asp700I GAANNNNTTC 2 cut(s) 1932, 2865
AspLEI GCGC 5 cut(s) 114, 122, 1607, 1609, 2715
AspS9I GGNCC 4 cut(s) 85, 796, 2266, 2267
AsuC2I CCSGG 3 cut(s) 80, 1362, 2833
AsuHPI GGTGA 6 cut(s) 274, 316, 1223, 1339, 1919, 3359
AsuII TTCGAA 1 cut(s) 2788
AsuNHI GCTAGC 1 cut(s) 1601
AvaI CYCGRG 1 cut(s) 1516
AvaII GGWCC 2 cut(s) 85, 796
BaeGI GKGCMC 3 cut(s) 288, 2270, 2287
BamHI GGATCC 1 cut(s) 3193
BanI GGYRCC 1 cut(s) 178
BanII GRGCYC 1 cut(s) 2270
BbsI GAAGAC 3 cut(s) 236, 1121, 2753
Bbv12I GWGCWC 3 cut(s) 288, 466, 2287
BbvCI CCTCAGC 1 cut(s) 2667
BbvI GCAGC 9 cut(s) 134, 375, 1375, 1397, 2011, 2148, 3478, 3554, 3583
BceAI ACGGC 6 cut(s) 44, 53, 146, 1545, 1740, 2989
BcgI CGANNNNNNTGC 3 cut(s) 37, 307, 341
BciT130I CCWGG 6 cut(s) 1074, 1315, 1341, 1540, 2154, 3066
BclI TGATCA 1 cut(s) 2116
BcnI CCSGG 3 cut(s) 80, 1362, 2833
BcoDI GTCTC 7 cut(s) 674, 850, 1173, 1853, 1952, 2696, 3232
BfmI CTRYAG 1 cut(s) 1618
BfrI CTTAAG 3 cut(s) 869, 1435, 1769
BfuAI ACCTGC 1 cut(s) 880
BglII AGATCT 1 cut(s) 1453
Bme1390I CCNGG 9 cut(s) 80, 1074, 1315, 1341, 1362, 1540, 2154, 2833, 3066
Bme18I GGWCC 2 cut(s) 85, 796
BmeRI GACNNNNNGTC 2 cut(s) 1846, 1866
BmeT110I CYCGRG 1 cut(s) 1516
BmgBI CACGTC 1 cut(s) 1219
BmgT120I GGNCC 4 cut(s) 85, 796, 2266, 2267
BmiI GGNNCC 8 cut(s) 87, 180, 724, 2267, 2268, 2269, 3195, 3645
BmrFI CCNGG 9 cut(s) 80, 1074, 1315, 1341, 1362, 1540, 2154, 2833, 3066
BmrI ACTGGG 3 cut(s) 499, 2131, 3199
BmtI GCTAGC 1 cut(s) 1605
BmuI ACTGGG 3 cut(s) 499, 2131, 3199
BpiI GAAGAC 3 cut(s) 236, 1121, 2753
BpmI CTGGAG 3 cut(s) 1026, 1125, 1749
Bpu10I CCTNAGC 1 cut(s) 2667
Bpu14I TTCGAA 1 cut(s) 2788
BpuEI CTTGAG 4 cut(s) 499, 2326, 2453, 3464
BpuMI CCSGG 3 cut(s) 80, 1362, 2833
Bsa29I ATCGAT 1 cut(s) 327
BsaBI GATNNNNATC 2 cut(s) 402, 1914
BsaHI GRCGYC 4 cut(s) 20, 132, 159, 360
BsaI GGTCTC 2 cut(s) 1173, 1952
BsaJI CCNNGG 9 cut(s) 78, 837, 1539, 1610, 1716, 2335, 3064, 3147, 3309
BsaWI WCCGGW 1 cut(s) 3196
Bse118I RCCGGY 4 cut(s) 29, 175, 356, 458
Bse1I ACTGG 7 cut(s) 494, 713, 1024, 2126, 2738, 3194, 3546
Bse3DI GCAATG 5 cut(s) 212, 513, 2462, 3254, 3477
Bse8I GATNNNNATC 2 cut(s) 402, 1914
BseAI TCCGGA 1 cut(s) 3196
BseBI CCWGG 6 cut(s) 1074, 1315, 1341, 1540, 2154, 3066
BseCI ATCGAT 1 cut(s) 327
BseDI CCNNGG 9 cut(s) 78, 837, 1539, 1610, 1716, 2335, 3064, 3147, 3309
BseGI GGATG 8 cut(s) 912, 943, 1478, 2905, 3190, 3394, 3507, 3592
BseJI GATNNNNATC 2 cut(s) 402, 1914
BseMI GCAATG 5 cut(s) 212, 513, 2462, 3254, 3477
BseMII CTCAG 6 cut(s) 391, 2044, 2073, 2658, 3330, 3413
BseNI ACTGG 7 cut(s) 494, 713, 1024, 2126, 2738, 3194, 3546
BsePI GCGCGC 1 cut(s) 1605
BseRI GAGGAG 4 cut(s) 181, 262, 1128, 2933
BseSI GKGCMC 3 cut(s) 288, 2270, 2287
BseXI GCAGC 9 cut(s) 134, 375, 1375, 1397, 2011, 2148, 3478, 3554, 3583
BseYI CCCAGC 2 cut(s) 2519, 3497
BsgI GTGCAG 4 cut(s) 1444, 2184, 2277, 3553
Bsh1236I CGCG 3 cut(s) 112, 120, 1607
BshFI GGCC 8 cut(s) 33, 353, 2152, 2268, 2533, 2831, 3115, 3139
BshNI GGYRCC 1 cut(s) 178
BshVI ATCGAT 1 cut(s) 327
BsiHKAI GWGCWC 3 cut(s) 288, 466, 2287
BsiHKCI CYCGRG 1 cut(s) 1516
BslFI GGGAC 5 cut(s) 1344, 2084, 2231, 3291, 3668
BsmAI GTCTC 7 cut(s) 674, 850, 1173, 1853, 1952, 2696, 3232
BsmFI GGGAC 5 cut(s) 1344, 2084, 2231, 3291, 3668
BsmI GAATGC 2 cut(s) 3287, 3517
BsnI GGCC 8 cut(s) 33, 353, 2152, 2268, 2533, 2831, 3115, 3139
Bso31I GGTCTC 2 cut(s) 1173, 1952
BsoBI CYCGRG 1 cut(s) 1516
Bsp119I TTCGAA 1 cut(s) 2788
Bsp120I GGGCCC 1 cut(s) 2266
Bsp1286I GDGCHC 4 cut(s) 288, 466, 2270, 2287
Bsp13I TCCGGA 1 cut(s) 3196
Bsp1407I TGTACA 1 cut(s) 1166
Bsp143I GATC 7 cut(s) 324, 1301, 1453, 2116, 2561, 3151, 3193
Bsp19I CCATGG 2 cut(s) 1610, 3309
BspACI CCGC 7 cut(s) 45, 83, 118, 354, 1570, 2068, 2497
BspANI GGCC 8 cut(s) 33, 353, 2152, 2268, 2533, 2831, 3115, 3139
BspCNI CTCAG 6 cut(s) 390, 2043, 2072, 2659, 3331, 3412
BspDI ATCGAT 1 cut(s) 327
BspEI TCCGGA 1 cut(s) 3196
BspFNI CGCG 3 cut(s) 112, 120, 1607
BspHI TCATGA 2 cut(s) 646, 2479
BspLI GGNNCC 8 cut(s) 87, 180, 724, 2267, 2268, 2269, 3195, 3645
BspMI ACCTGC 1 cut(s) 880
BspOI GCTAGC 1 cut(s) 1605
BspPI GGATC 3 cut(s) 3159, 3188, 3201
BspT104I TTCGAA 1 cut(s) 2788
BspT107I GGYRCC 1 cut(s) 178
BspTI CTTAAG 3 cut(s) 869, 1435, 1769
BspTNI GGTCTC 2 cut(s) 1173, 1952
BsrDI GCAATG 5 cut(s) 212, 513, 2462, 3254, 3477
BsrFI RCCGGY 4 cut(s) 29, 175, 356, 458
BsrGI TGTACA 1 cut(s) 1166
BsrI ACTGG 7 cut(s) 494, 713, 1024, 2126, 2738, 3194, 3546
BssAI RCCGGY 4 cut(s) 29, 175, 356, 458
BssECI CCNNGG 9 cut(s) 78, 837, 1539, 1610, 1716, 2335, 3064, 3147, 3309
BssHII GCGCGC 1 cut(s) 1605
BssMI GATC 7 cut(s) 324, 1301, 1453, 2116, 2561, 3151, 3193
BssNI GRCGYC 4 cut(s) 20, 132, 159, 360
BssT1I CCWWGG 6 cut(s) 837, 1610, 1716, 2335, 3147, 3309
Bst2UI CCWGG 6 cut(s) 1074, 1315, 1341, 1540, 2154, 3066
Bst4CI ACNGT 9 cut(s) 578, 1864, 2207, 2399, 2707, 2963, 3032, 3047, 3574
Bst6I CTCTTC 1 cut(s) 239
BstACI GRCGYC 4 cut(s) 20, 132, 159, 360
BstAFI CTTAAG 3 cut(s) 869, 1435, 1769
BstAUI TGTACA 1 cut(s) 1166
BstBI TTCGAA 1 cut(s) 2788
BstC8I GCNNGC 8 cut(s) 31, 358, 513, 1603, 1607, 2857, 3011, 3565
BstDSI CCRYGG 2 cut(s) 1610, 3309
BstENI CCTNNNNNAGG 2 cut(s) 1077, 2480
BstF5I GGATG 8 cut(s) 912, 943, 1478, 2905, 3190, 3394, 3507, 3592
BstFNI CGCG 3 cut(s) 112, 120, 1607
BstHHI GCGC 5 cut(s) 114, 122, 1607, 1609, 2715
BstKTI GATC 7 cut(s) 327, 1304, 1456, 2119, 2564, 3154, 3196
BstMAI GTCTC 7 cut(s) 674, 850, 1173, 1853, 1952, 2696, 3232
BstMBI GATC 7 cut(s) 324, 1301, 1453, 2116, 2561, 3151, 3193
BstMWI GCNNNNNNNGC 9 cut(s) 65, 512, 640, 1431, 1440, 1693, 2149, 2158, 3010
BstNI CCWGG 6 cut(s) 1074, 1315, 1341, 1540, 2154, 3066
BstNSI RCATGY 4 cut(s) 2147, 2678, 3632, 3691
BstSCI CCNGG 9 cut(s) 78, 1072, 1313, 1339, 1360, 1538, 2152, 2831, 3064
BstSFI CTRYAG 1 cut(s) 1618
BstSLI GKGCMC 3 cut(s) 288, 2270, 2287
BstUI CGCG 3 cut(s) 112, 120, 1607
BstV1I GCAGC 9 cut(s) 134, 375, 1375, 1397, 2011, 2148, 3478, 3554, 3583
BstV2I GAAGAC 3 cut(s) 236, 1121, 2753
BstX2I RGATCY 3 cut(s) 1453, 3151, 3193
BstXI CCANNNNNNTGG 1 cut(s) 1190
BstYI RGATCY 3 cut(s) 1453, 3151, 3193
Bsu15I ATCGAT 1 cut(s) 327
BsuRI GGCC 8 cut(s) 33, 353, 2152, 2268, 2533, 2831, 3115, 3139
BsuTUI ATCGAT 1 cut(s) 327
BtgI CCRYGG 2 cut(s) 1610, 3309
BtrI CACGTC 1 cut(s) 1219
BtsCI GGATG 8 cut(s) 912, 943, 1478, 2905, 3190, 3394, 3507, 3592
BtsI GCAGTG 2 cut(s) 1413, 2783
BveI ACCTGC 1 cut(s) 880
Cac8I GCNNGC 8 cut(s) 31, 358, 513, 1603, 1607, 2857, 3011, 3565
CaiI CAGNNNCTG 2 cut(s) 1388, 2855
CciI TCATGA 2 cut(s) 646, 2479
CfoI GCGC 5 cut(s) 114, 122, 1607, 1609, 2715
Cfr10I RCCGGY 4 cut(s) 29, 175, 356, 458
Cfr13I GGNCC 4 cut(s) 85, 796, 2266, 2267
ClaI ATCGAT 1 cut(s) 327
CseI GACGC 3 cut(s) 20, 167, 349
Csp6I GTAC 4 cut(s) 1151, 1167, 2793, 3057
CviQI GTAC 4 cut(s) 1151, 1167, 2793, 3057
DpnI GATC 7 cut(s) 326, 1303, 1455, 2118, 2563, 3153, 3195
DpnII GATC 7 cut(s) 324, 1301, 1453, 2116, 2561, 3151, 3193
DrdI GACNNNNNNGTC 2 cut(s) 161, 164
DriI GACNNNNNGTC 2 cut(s) 1846, 1866
DseDI GACNNNNNNGTC 2 cut(s) 161, 164
EaeI YGGCCR 3 cut(s) 31, 2829, 3113
Eam1104I CTCTTC 1 cut(s) 239
Eam1105I GACNNNNNGTC 2 cut(s) 1846, 1866
EarI CTCTTC 1 cut(s) 239
EciI GGCGGA 3 cut(s) 98, 1585, 2512
Eco130I CCWWGG 6 cut(s) 837, 1610, 1716, 2335, 3147, 3309
Eco147I AGGCCT 2 cut(s) 2152, 2533
Eco24I GRGCYC 1 cut(s) 2270
Eco31I GGTCTC 2 cut(s) 1173, 1952
Eco47I GGWCC 2 cut(s) 85, 796
Eco57I CTGAAG 3 cut(s) 990, 1133, 1683
Eco88I CYCGRG 1 cut(s) 1516
EcoNI CCTNNNNNAGG 2 cut(s) 1077, 2480
EcoO109I RGGNCCY 2 cut(s) 2266, 2267
EcoRI GAATTC 1 cut(s) 1627
EcoRII CCWGG 6 cut(s) 1072, 1313, 1339, 1538, 2152, 3064
EcoT14I CCWWGG 6 cut(s) 837, 1610, 1716, 2335, 3147, 3309
EcoT22I ATGCAT 2 cut(s) 863, 3519
EcoT38I GRGCYC 1 cut(s) 2270
ErhI CCWWGG 6 cut(s) 837, 1610, 1716, 2335, 3147, 3309
FalI AAGNNNNNCTT 4 cut(s) 513, 545, 2071, 2103
FaqI GGGAC 5 cut(s) 1344, 2084, 2231, 3291, 3668
FauNDI CATATG 1 cut(s) 560
FbaI TGATCA 1 cut(s) 2116
FblI GTMKAC 1 cut(s) 2902
FokI GGATG 8 cut(s) 919, 930, 1465, 2892, 3197, 3401, 3514, 3599
FriOI GRGCYC 1 cut(s) 2270
GlaI GCGC 5 cut(s) 113, 121, 1606, 1608, 2714
GsaI CCCAGC 2 cut(s) 2523, 3501
GsuI CTGGAG 3 cut(s) 1026, 1125, 1749
HaeIII GGCC 8 cut(s) 33, 353, 2152, 2268, 2533, 2831, 3115, 3139
HgaI GACGC 3 cut(s) 20, 167, 349
HhaI GCGC 5 cut(s) 114, 122, 1607, 1609, 2715
Hin1I GRCGYC 4 cut(s) 20, 132, 159, 360
Hin6I GCGC 5 cut(s) 112, 120, 1605, 1607, 2713
HinP1I GCGC 5 cut(s) 112, 120, 1605, 1607, 2713
HincII GTYRAC 3 cut(s) 2444, 3210, 3474
HindII GTYRAC 3 cut(s) 2444, 3210, 3474
HindIII AAGCTT 1 cut(s) 1574
HphI GGTGA 6 cut(s) 274, 316, 1223, 1339, 1919, 3359
Hpy99I CGWCG 9 cut(s) 11, 14, 22, 25, 134, 158, 161, 167, 365
HpyAV CCTTC 8 cut(s) 112, 1950, 2205, 2465, 2486, 2549, 3297, 3378
HpyCH4III ACNGT 9 cut(s) 578, 1864, 2207, 2399, 2707, 2963, 3032, 3047, 3574
HpyCH4IV ACGT 5 cut(s) 20, 132, 916, 1218, 2566
HpyF10VI GCNNNNNNNGC 9 cut(s) 65, 512, 640, 1431, 1440, 1693, 2149, 2158, 3010
HpySE526I ACGT 5 cut(s) 20, 132, 916, 1218, 2566
Hsp92I GRCGYC 4 cut(s) 20, 132, 159, 360
HspAI GCGC 5 cut(s) 112, 120, 1605, 1607, 2713
Kpn2I TCCGGA 1 cut(s) 3196
KroI GCCGGC 2 cut(s) 29, 356
KroNI GCCGGC 2 cut(s) 31, 358
Ksp22I TGATCA 1 cut(s) 2116
Kzo9I GATC 7 cut(s) 324, 1301, 1453, 2116, 2561, 3151, 3193
LmnI GCTCC 9 cut(s) 130, 202, 270, 728, 1007, 1033, 1242, 1431, 1475
Lsp1109I GCAGC 9 cut(s) 134, 375, 1375, 1397, 2011, 2148, 3478, 3554, 3583
MaeII ACGT 5 cut(s) 20, 132, 916, 1218, 2566
MaeIII GTNAC 7 cut(s) 70, 1015, 1985, 2180, 2845, 3537, 3622
MalI GATC 7 cut(s) 326, 1303, 1455, 2118, 2563, 3153, 3195
MboI GATC 7 cut(s) 324, 1301, 1453, 2116, 2561, 3151, 3193
MfeI CAATTG 1 cut(s) 1011
MflI RGATCY 3 cut(s) 1453, 3151, 3193
MhlI GDGCHC 4 cut(s) 288, 466, 2270, 2287
MlyI GAGTC 4 cut(s) 2319, 2416, 2767, 3391
MmeI TCCRAC 2 cut(s) 2381, 2444
Mph1103I ATGCAT 2 cut(s) 863, 3519
MreI CGCCGGCG 1 cut(s) 356
MroI TCCGGA 1 cut(s) 3196
MroNI GCCGGC 2 cut(s) 29, 356
MroXI GAANNNNTTC 2 cut(s) 1932, 2865
MslI CAYNNNNRTG 3 cut(s) 278, 1763, 3453
MspA1I CMGCKG 3 cut(s) 1388, 1846, 2161
MspCI CTTAAG 3 cut(s) 869, 1435, 1769
MspR9I CCNGG 9 cut(s) 80, 1074, 1315, 1341, 1362, 1540, 2154, 2833, 3066
MunI CAATTG 1 cut(s) 1011
Mva1269I GAATGC 2 cut(s) 3287, 3517
MvaI CCWGG 6 cut(s) 1074, 1315, 1341, 1540, 2154, 3066
MvnI CGCG 3 cut(s) 112, 120, 1607
MwoI GCNNNNNNNGC 9 cut(s) 65, 512, 640, 1431, 1440, 1693, 2149, 2158, 3010
NaeI GCCGGC 2 cut(s) 31, 358
NciI CCSGG 3 cut(s) 80, 1362, 2833
NcoI CCATGG 2 cut(s) 1610, 3309
NdeI CATATG 1 cut(s) 560
NdeII GATC 7 cut(s) 324, 1301, 1453, 2116, 2561, 3151, 3193
NgoMIV GCCGGC 2 cut(s) 29, 356
NheI GCTAGC 1 cut(s) 1601
NlaIV GGNNCC 8 cut(s) 87, 180, 724, 2267, 2268, 2269, 3195, 3645
NmeAIII GCCGAG 1 cut(s) 3091
NmuCI GTSAC 4 cut(s) 70, 1015, 2180, 3537
NsiI ATGCAT 2 cut(s) 863, 3519
NspI RCATGY 4 cut(s) 2147, 2678, 3632, 3691
NspV TTCGAA 1 cut(s) 2788
PaeR7I CTCGAG 1 cut(s) 1516
PagI TCATGA 2 cut(s) 646, 2479
PauI GCGCGC 1 cut(s) 1605
PceI AGGCCT 2 cut(s) 2152, 2533
PciI ACATGT 1 cut(s) 3687
PcsI WCGNNNNNNNCGW 3 cut(s) 159, 162, 2417
PctI GAATGC 2 cut(s) 3287, 3517
PdiI GCCGGC 2 cut(s) 31, 358
PdmI GAANNNNTTC 2 cut(s) 1932, 2865
PflFI GACNNNGTC 1 cut(s) 161
PflMI CCANNNNNTGG 1 cut(s) 719
PfoI TCCNGGA 1 cut(s) 1339
PleI GAGTC 4 cut(s) 2318, 2416, 2766, 3391
PpsI GAGTC 4 cut(s) 2318, 2416, 2766, 3391
PscI ACATGT 1 cut(s) 3687
PshBI ATTAAT 1 cut(s) 1370
PsiI TTATAA 2 cut(s) 2688, 2933
Psp6I CCWGG 6 cut(s) 1072, 1313, 1339, 1538, 2152, 3064
PspFI CCCAGC 2 cut(s) 2519, 3497
PspGI CCWGG 6 cut(s) 1072, 1313, 1339, 1538, 2152, 3064
PspN4I GGNNCC 8 cut(s) 87, 180, 724, 2267, 2268, 2269, 3195, 3645
PspOMI GGGCCC 1 cut(s) 2266
PspPI GGNCC 4 cut(s) 85, 796, 2266, 2267
PspXI VCTCGAGB 1 cut(s) 1516
PstNI CAGNNNCTG 2 cut(s) 1388, 2855
PsuI RGATCY 3 cut(s) 1453, 3151, 3193
PsyI GACNNNGTC 1 cut(s) 161
PteI GCGCGC 1 cut(s) 1605
PvuII CAGCTG 3 cut(s) 1388, 1846, 2161
RsaI GTAC 4 cut(s) 1152, 1168, 2794, 3058
RsaNI GTAC 4 cut(s) 1151, 1167, 2793, 3057
RseI CAYNNNNRTG 3 cut(s) 278, 1763, 3453
Sau3AI GATC 7 cut(s) 324, 1301, 1453, 2116, 2561, 3151, 3193
Sau96I GGNCC 4 cut(s) 85, 796, 2266, 2267
SchI GAGTC 4 cut(s) 2319, 2416, 2767, 3391
ScrFI CCNGG 9 cut(s) 80, 1074, 1315, 1341, 1362, 1540, 2154, 2833, 3066
SduI GDGCHC 4 cut(s) 288, 466, 2270, 2287
SfcI CTRYAG 1 cut(s) 1618
Sfr274I CTCGAG 1 cut(s) 1516
SfuI TTCGAA 1 cut(s) 2788
SgrAI CRCCGGYG 2 cut(s) 175, 356
SinI GGWCC 2 cut(s) 85, 796
SlaI CTCGAG 1 cut(s) 1516
SmiMI CAYNNNNRTG 3 cut(s) 278, 1763, 3453
SmlI CTYRAG 8 cut(s) 478, 869, 1435, 1516, 1769, 2341, 2468, 3443
SmoI CTYRAG 8 cut(s) 478, 869, 1435, 1516, 1769, 2341, 2468, 3443
SseBI AGGCCT 2 cut(s) 2152, 2533
SsiI CCGC 7 cut(s) 45, 83, 118, 354, 1570, 2068, 2497
SspI AATATT 1 cut(s) 2944
StuI AGGCCT 2 cut(s) 2152, 2533
StyD4I CCNGG 9 cut(s) 78, 1072, 1313, 1339, 1360, 1538, 2152, 2831, 3064
StyI CCWWGG 6 cut(s) 837, 1610, 1716, 2335, 3147, 3309
TaaI ACNGT 9 cut(s) 578, 1864, 2207, 2399, 2707, 2963, 3032, 3047, 3574
TaiI ACGT 5 cut(s) 23, 135, 919, 1221, 2569
TaqI TCGA 6 cut(s) 327, 472, 1517, 2770, 2788, 3027
TatI WGTACW 3 cut(s) 1166, 2792, 3056
TauI GCSGC 2 cut(s) 48, 356
TseFI GTSAC 4 cut(s) 70, 1015, 2180, 3537
TseI GCWGC 9 cut(s) 122, 388, 1385, 1388, 2024, 2161, 3466, 3567, 3596
Tsp45I GTSAC 4 cut(s) 70, 1015, 2180, 3537
TspGWI ACGGA 1 cut(s) 1908
Tth111I GACNNNGTC 1 cut(s) 161
Van91I CCANNNNNTGG 1 cut(s) 719
Vha464I CTTAAG 3 cut(s) 869, 1435, 1769
VneI GTGCAC 2 cut(s) 284, 2283
VpaK11BI GGWCC 2 cut(s) 85, 796
VspI ATTAAT 1 cut(s) 1370
XagI CCTNNNNNAGG 2 cut(s) 1077, 2480
XapI RAATTY 9 cut(s) 651, 1335, 1627, 1792, 2107, 2783, 3359, 3409, 3711
XceI RCATGY 4 cut(s) 2147, 2678, 3632, 3691
XcmI CCANNNNNNNNNTGG 2 cut(s) 3132, 3560
XhoI CTCGAG 1 cut(s) 1516
XmiI GTMKAC 1 cut(s) 2902
XmnI GAANNNNTTC 2 cut(s) 1932, 2865
ZraI GACGTC 2 cut(s) 21, 133
Zsp2I ATGCAT 2 cut(s) 863, 3519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.