Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0009424

Physical Location & Seq

Genomic Coordinates Forward (+)

11191398 .. 11194967

Gene Structure 3570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG063700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2229 bp

ATGGACGACGACGCAACGACGTCGTTCGCCGGCCACAAGCTCTGCGGCTTCCTCTACGCCGTTCTCGCCGTCACTTCCCCGGCGGACCCACCCGACCTCCCCTTCGGAACGCGCTTCCGCGCAGCTCCCGACGTCAGTTTCAAATCCCAAAACGACGTCGCCGTCGTCCTATCGCCGGTGCCGGAAAACTCCTCTGATTCGGAGCAATGCGAGGGGGAATTGGGGAGGAAGACGAGGATGAGGAAGAGGAGTATAGGGCTGGTGAATGGGAGCATAAGCGTGGTGCACCAGCTTCACGCTTTGGTGATGAACAAGTGCATCAAGATCGATGCTTTGTTGGTTCGGGTTGAGGCCGCCGGCGTCGGTGGGCAACAACTCAGGGCTGTGCTGCTGGTTGATGTCTATCTTCCGATTGAGTTATGGTGTGGTTGGCAGTTTCCGAAATCGGGGTCTATTGCCGGTGCTCTGTTTCGACACTTGAGTTCTGACTGGGGGGAGAGAAGTGCAATGCTGGCTGACAAAGATTATCTTGAAAATAATCTAGGAGGTGGCAGAAACATATGGAATCTTTCTGACTGTCATGTTTTTGGTTGCAAACTGCATCATAATTTCACTGATTCTTCAAAGAAGAAGCTATTTGAGCTTCATGAAATTTTTAAGAGTTTACCTAGTGTGGCAGAGACAGGAAACCCTAGTTCTGCTAGAATACAACCAGTTGATGACTCCTGTAAAGCTGGTATTTGGGATATATCTGATGACATATTACTAAATATCCTAGCTACACTCAACGCAATGGACCTTGTTAGGGTGTCTGCAACTTGTTGCCATTTGAGAACCTTGGCTGTCTCAATCATGCCATGCATGAAACTTAAATTGTTTCCTCATCAGCAGGTAGCAGTTGAATGGATGCTTCAACGTGAGAAAAAGGCTAAAGTTTTGCCCCATCCATTGTATCTGGCTTTCTCAATTGAAGATGGATTTTCTTTCTGTATTAACACTATATCTGGAGAAATTGTCACTGGCGAAGCTCCCACTATCAGTGATTTTCATGGGGGAATGTTCTGTGATGAACCTGGACTAGGAAAGACCATAACTGCTCTTTCACTGATTCTGAAGACACAAGGAACTCTGGCAACTCCTCCAGATGGGGTACAAGTGAATTGGTGTACACATAATGGAGACCAGAAATGTGGGTATTATGAGCTTGATGGTGATGATGTGGCTGGTAGTAGTATGCTCCCAATAAAGAGGGACATGGGTCAGGAAGCTCAAAATGGTCTTGGCGATTCCAAATACTGCCGATCTAAAAGAGTCAGGCTACTTCTTGATGAGCAAATTCCAGGATTCACCAATTCATGTCCCGGCAAAGTAATGGAAACACCAGCAGCTGCATACTCTAATTCAGCAGTGTGTGTGGTTCGGTGCAGTAGGAGCTTAAGTGGCATAAAAAAAGATCTTCTGCCATCATTTCAAGGAACTTCCGGCTATCCCAAACAAACAAAGGCCGGAAAAAACTCGAGTAGATTATCCAACGACACCTGGGTTCAGTGTGATGTATGCTGTAAGTGGCGGAAGCTTCCAAAAAGTAGTATTGCTGATGCTATGGTTCTGTACATGAATTCTGACCCTTTCTACCAGAGTTGTAGTGTTCCTGAAGAATCCTATGATAATTCCGAGCCAATAACGCATTTACTAGGGTTTTACACCAAGGGAACAGCTGGAGGGGAGGAACAAAATGTTTCTTTTTTCATTAGTGTGCTTAAGGAGAGGTATGCCTTGATAAATTCTATTACAAAGAAAGCCCTATCTTGGTTGGCTAAACTTTCTTCTGACCAGCTGTCAGTAATGGAGACAGTTGGTCTGCGAAGTCCTTTTGTAAGCTCTTGTGTAGAGTTGGGTGATGCCTATCCGTTTCAGGAATTATTTCAAGCATTTGGTCTCAAAAGAAGGGTAGAAAAGGGTGTTATTAAATGGTGTTACCCACGAAGTCTTAACAACATGAGTTTTGATGTTGCTGCTCTCAGAATTGCTCTTTTTGTGCCATTGAACTCAGTGAGGCGGTATCTTTCAAGAGCAACTTTAATTGTTGTCCCATCAAATTTAGTTGATCACTGGGAAACGCAAATTAAGAAGCATGTCAGGCCTGGTCAGCAGCGAATTTATGTGTGGAGTGACCATAAGAAGCCTTCTGCACACAGCCTCCCCGGAGCAAACCTTCAACCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Helicase_C SNF2_N zf-CW

Protein Analysis

742

Amino Acids

81.77

Weight (kDa)

8.17

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	295 - 730	1e-20	SNF2-related domain
zf-CW	PF07496	513 - 553	2.5e-08	CW-type Zinc Finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54460 AT3G54460
fragaria_vesca	FvH4_7g02950 FvH4_7g02950 FvH4_7g02950
malus_domestica	MD02G1288500.v1.1 MD07G1038300.v1.1
prunus_persica	Prupe.2G034500_v2.0.a1 Prupe.2G034500_v2.0.a1
pyrus_communis	pycom07g02660
rosa_chinensis	RchiOBHm_Chr1g0323901
rosa_laevigata	RLG00000030243 RLG00000031960
rosa_multiflora	Rmu_sc0001449.1_g000002 Rmu_sc0012343.1_g000008
rosa_roxburghii	Rroxscaffold_4G00326120
rosa_rugosa	Rorug01G0040500.1
rosa_samantha	Rh1CG059700 Rh1CG060300 Rh1DG063700 Rh1DG064300
rosa_wichuraiana	Rw0G011390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
AatII	GACGTC	3 cut(s)	23, 135, 159
Acc36I	ACCTGC	1 cut(s)	880
AccB1I	GGYRCC	1 cut(s)	178
AccII	CGCG	2 cut(s)	112, 120
AciI	CCGC	6 cut(s)	45, 83, 118, 354, 1570, 2059
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	6 cut(s)	651, 1335, 1618, 1783, 2098, 2157
AcuI	CTGAAG	2 cut(s)	1133, 1674
AcyI	GRCGYC	4 cut(s)	20, 132, 156, 360
AfaI	GTAC	3 cut(s)	1152, 1168, 1613
AfiI	CCNNNNNNNGG	6 cut(s)	175, 446, 805, 1079, 1145, 1809
AflII	CTTAAG	2 cut(s)	1435, 1760
AhdI	GACNNNNNGTC	2 cut(s)	1837, 1857
AjnI	CCWGG	4 cut(s)	1072, 1339, 1538, 2143
Alw21I	GWGCWC	2 cut(s)	288, 466
Alw26I	GTCTC	5 cut(s)	674, 850, 1173, 1844, 1943
Alw44I	GTGCAC	1 cut(s)	284
AlwNI	CAGNNNCTG	1 cut(s)	1388
Ama87I	CYCGRG	1 cut(s)	1516
AoxI	GGCC	4 cut(s)	31, 351, 1503, 2141
ApaLI	GTGCAC	1 cut(s)	284
ApeKI	GCWGC	6 cut(s)	122, 388, 1385, 1388, 2015, 2152
ApoI	RAATTY	6 cut(s)	651, 1335, 1618, 1783, 2098, 2157
ArsI	GACNNNNNNTTYG	4 cut(s)	86, 118, 434, 466
Asp700I	GAANNNNTTC	1 cut(s)	1923
AspLEI	GCGC	2 cut(s)	114, 122
AspS9I	GGNCC	2 cut(s)	85, 796
AsuC2I	CCSGG	3 cut(s)	80, 1362, 2205
AsuHPI	GGTGA	5 cut(s)	274, 316, 1223, 1339, 1910
AvaI	CYCGRG	1 cut(s)	1516
AvaII	GGWCC	2 cut(s)	85, 796
BaeGI	GKGCMC	1 cut(s)	288
BanI	GGYRCC	1 cut(s)	178
BbsI	GAAGAC	2 cut(s)	236, 1121
Bbv12I	GWGCWC	2 cut(s)	288, 466
BbvI	GCAGC	6 cut(s)	134, 375, 1375, 1397, 2002, 2164
BccI	CCATC	6 cut(s)	951, 968, 1139, 1202, 1471, 2101
BceAI	ACGGC	3 cut(s)	44, 53, 146
BcgI	CGANNNNNNTGC	3 cut(s)	37, 307, 341
BciT130I	CCWGG	4 cut(s)	1074, 1341, 1540, 2145
BclI	TGATCA	1 cut(s)	2107
BcnI	CCSGG	3 cut(s)	80, 1362, 2205
BcoDI	GTCTC	5 cut(s)	674, 850, 1173, 1844, 1943
BfaI	CTAG	7 cut(s)	542, 669, 693, 702, 776, 1079, 1694
BfrI	CTTAAG	2 cut(s)	1435, 1760
BfuAI	ACCTGC	1 cut(s)	880
BglII	AGATCT	1 cut(s)	1453
BisI	GCNGC	8 cut(s)	46, 123, 354, 389, 1386, 1389, 2016, 2153
BlsI	GCNGC	8 cut(s)	47, 124, 355, 390, 1387, 1390, 2017, 2154
Bme1390I	CCNGG	7 cut(s)	80, 1074, 1341, 1362, 1540, 2145, 2205
Bme18I	GGWCC	2 cut(s)	85, 796
BmeRI	GACNNNNNGTC	2 cut(s)	1837, 1857
BmeT110I	CYCGRG	1 cut(s)	1516
BmgT120I	GGNCC	2 cut(s)	85, 796
BmiI	GGNNCC	2 cut(s)	87, 180
BmrFI	CCNGG	7 cut(s)	80, 1074, 1341, 1362, 1540, 2145, 2205
BmrI	ACTGGG	2 cut(s)	499, 2122
BmsI	GCATC	6 cut(s)	319, 327, 610, 897, 1588, 1891
BmuI	ACTGGG	2 cut(s)	499, 2122
BoxI	GACNNNNGTC	1 cut(s)	1257
BpiI	GAAGAC	2 cut(s)	236, 1121
BpmI	CTGGAG	3 cut(s)	1026, 1125, 1740
BpuEI	CTTGAG	1 cut(s)	499
BpuMI	CCSGG	3 cut(s)	80, 1362, 2205
Bsa29I	ATCGAT	1 cut(s)	327
BsaBI	GATNNNNATC	2 cut(s)	402, 1905
BsaHI	GRCGYC	4 cut(s)	20, 132, 156, 360
BsaI	GGTCTC	2 cut(s)	1173, 1943
BsaJI	CCNNGG	5 cut(s)	78, 837, 1539, 1707, 2203
BsaXI	ACNNNNNCTCC	8 cut(s)	81, 111, 999, 1029, 1423, 1453, 2184, 2214
Bsc4I	CCNNNNNNNGG	6 cut(s)	175, 446, 805, 1079, 1145, 1809
Bse118I	RCCGGY	4 cut(s)	29, 175, 356, 458
Bse1I	ACTGG	4 cut(s)	494, 713, 1024, 2117
Bse3DI	GCAATG	3 cut(s)	212, 513, 798
Bse8I	GATNNNNATC	2 cut(s)	402, 1905
BseBI	CCWGG	4 cut(s)	1074, 1341, 1540, 2145
BseCI	ATCGAT	1 cut(s)	327
BseDI	CCNNGG	5 cut(s)	78, 837, 1539, 1707, 2203
BseGI	GGATG	3 cut(s)	243, 912, 943
BseJI	GATNNNNATC	2 cut(s)	402, 1905
BseLI	CCNNNNNNNGG	6 cut(s)	175, 446, 805, 1079, 1145, 1809
BseMI	GCAATG	3 cut(s)	212, 513, 798
BseMII	CTCAG	3 cut(s)	391, 2035, 2064
BseNI	ACTGG	4 cut(s)	494, 713, 1024, 2117
BseRI	GAGGAG	3 cut(s)	181, 262, 1128
BseSI	GKGCMC	1 cut(s)	288
BseXI	GCAGC	6 cut(s)	134, 375, 1375, 1397, 2002, 2164
BsgI	GTGCAG	2 cut(s)	1444, 2175
Bsh1236I	CGCG	2 cut(s)	112, 120
BshFI	GGCC	4 cut(s)	33, 353, 1505, 2143
BshNI	GGYRCC	1 cut(s)	178
BshVI	ATCGAT	1 cut(s)	327
BsiHKAI	GWGCWC	2 cut(s)	288, 466
BsiHKCI	CYCGRG	1 cut(s)	1516
BslFI	GGGAC	3 cut(s)	1265, 1344, 2075
BslI	CCNNNNNNNGG	6 cut(s)	175, 446, 805, 1079, 1145, 1809
BsmAI	GTCTC	5 cut(s)	674, 850, 1173, 1844, 1943
BsmFI	GGGAC	3 cut(s)	1265, 1344, 2075
BsnI	GGCC	4 cut(s)	33, 353, 1505, 2143
Bso31I	GGTCTC	2 cut(s)	1173, 1943
BsoBI	CYCGRG	1 cut(s)	1516
Bsp1286I	GDGCHC	2 cut(s)	288, 466
Bsp1407I	TGTACA	2 cut(s)	1166, 1611
Bsp143I	GATC	4 cut(s)	324, 1301, 1453, 2107
BspACI	CCGC	6 cut(s)	45, 83, 118, 354, 1570, 2059
BspANI	GGCC	4 cut(s)	33, 353, 1505, 2143
BspCNI	CTCAG	3 cut(s)	390, 2034, 2063
BspDI	ATCGAT	1 cut(s)	327
BspFNI	CGCG	2 cut(s)	112, 120
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	2 cut(s)	87, 180
BspMI	ACCTGC	1 cut(s)	880
BspT107I	GGYRCC	1 cut(s)	178
BspTI	CTTAAG	2 cut(s)	1435, 1760
BspTNI	GGTCTC	2 cut(s)	1173, 1943
BsrDI	GCAATG	3 cut(s)	212, 513, 798
BsrFI	RCCGGY	4 cut(s)	29, 175, 356, 458
BsrGI	TGTACA	2 cut(s)	1166, 1611
BsrI	ACTGG	4 cut(s)	494, 713, 1024, 2117
BssAI	RCCGGY	4 cut(s)	29, 175, 356, 458
BssECI	CCNNGG	5 cut(s)	78, 837, 1539, 1707, 2203
BssMI	GATC	4 cut(s)	324, 1301, 1453, 2107
BssNI	GRCGYC	4 cut(s)	20, 132, 156, 360
BssT1I	CCWWGG	2 cut(s)	837, 1707
Bst2UI	CCWGG	4 cut(s)	1074, 1341, 1540, 2145
Bst4CI	ACNGT	2 cut(s)	578, 1855
Bst6I	CTCTTC	1 cut(s)	239
BstACI	GRCGYC	4 cut(s)	20, 132, 156, 360
BstAFI	CTTAAG	2 cut(s)	1435, 1760
BstAUI	TGTACA	2 cut(s)	1166, 1611
BstC8I	GCNNGC	3 cut(s)	31, 358, 513
BstDEI	CTNAG	3 cut(s)	377, 2021, 2050
BstENI	CCTNNNNNAGG	1 cut(s)	1077
BstF5I	GGATG	3 cut(s)	243, 912, 943
BstFNI	CGCG	2 cut(s)	112, 120
BstHHI	GCGC	2 cut(s)	114, 122
BstKTI	GATC	4 cut(s)	327, 1304, 1456, 2110
BstMAI	GTCTC	5 cut(s)	674, 850, 1173, 1844, 1943
BstMBI	GATC	4 cut(s)	324, 1301, 1453, 2107
BstMWI	GCNNNNNNNGC	8 cut(s)	65, 512, 640, 1431, 1440, 1684, 2140, 2149
BstNI	CCWGG	4 cut(s)	1074, 1341, 1540, 2145
BstNSI	RCATGY	1 cut(s)	2138
BstPAI	GACNNNNGTC	1 cut(s)	1257
BstSCI	CCNGG	7 cut(s)	78, 1072, 1339, 1360, 1538, 2143, 2203
BstSLI	GKGCMC	1 cut(s)	288
BstUI	CGCG	2 cut(s)	112, 120
BstV1I	GCAGC	6 cut(s)	134, 375, 1375, 1397, 2002, 2164
BstV2I	GAAGAC	2 cut(s)	236, 1121
BstX2I	RGATCY	1 cut(s)	1453
BstXI	CCANNNNNNTGG	1 cut(s)	1190
BstYI	RGATCY	1 cut(s)	1453
Bsu15I	ATCGAT	1 cut(s)	327
BsuRI	GGCC	4 cut(s)	33, 353, 1505, 2143
BsuTUI	ATCGAT	1 cut(s)	327
BtsCI	GGATG	3 cut(s)	243, 912, 943
BtsI	GCAGTG	1 cut(s)	1413
BtsIMutI	CAGTG	8 cut(s)	612, 1017, 1045, 1103, 1413, 1553, 2058, 2110
BveI	ACCTGC	1 cut(s)	880
Cac8I	GCNNGC	3 cut(s)	31, 358, 513
CaiI	CAGNNNCTG	1 cut(s)	1388
CciI	TCATGA	1 cut(s)	646
CfoI	GCGC	2 cut(s)	114, 122
Cfr10I	RCCGGY	4 cut(s)	29, 175, 356, 458
Cfr13I	GGNCC	2 cut(s)	85, 796
ClaI	ATCGAT	1 cut(s)	327
CseI	GACGC	2 cut(s)	20, 349
Csp6I	GTAC	3 cut(s)	1151, 1167, 1612
CviQI	GTAC	3 cut(s)	1151, 1167, 1612
DdeI	CTNAG	3 cut(s)	377, 2021, 2050
DpnI	GATC	4 cut(s)	326, 1303, 1455, 2109
DpnII	GATC	4 cut(s)	324, 1301, 1453, 2107
DrdI	GACNNNNNNGTC	1 cut(s)	161
DriI	GACNNNNNGTC	2 cut(s)	1837, 1857
DseDI	GACNNNNNNGTC	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	239
Eam1105I	GACNNNNNGTC	2 cut(s)	1837, 1857
EarI	CTCTTC	1 cut(s)	239
EciI	GGCGGA	2 cut(s)	98, 1585
Eco130I	CCWWGG	2 cut(s)	837, 1707
Eco147I	AGGCCT	1 cut(s)	2143
Eco31I	GGTCTC	2 cut(s)	1173, 1943
Eco47I	GGWCC	2 cut(s)	85, 796
Eco57I	CTGAAG	2 cut(s)	1133, 1674
Eco88I	CYCGRG	1 cut(s)	1516
EcoNI	CCTNNNNNAGG	1 cut(s)	1077
EcoRI	GAATTC	1 cut(s)	1618
EcoRII	CCWGG	4 cut(s)	1072, 1339, 1538, 2143
EcoT14I	CCWWGG	2 cut(s)	837, 1707
EcoT22I	ATGCAT	1 cut(s)	863
ErhI	CCWWGG	2 cut(s)	837, 1707
FalI	AAGNNNNNCTT	4 cut(s)	513, 545, 2062, 2094
FaqI	GGGAC	3 cut(s)	1265, 1344, 2075
FauNDI	CATATG	1 cut(s)	560
FbaI	TGATCA	1 cut(s)	2107
Fnu4HI	GCNGC	8 cut(s)	46, 123, 354, 389, 1386, 1389, 2016, 2153
FokI	GGATG	3 cut(s)	250, 919, 930
Fsp4HI	GCNGC	8 cut(s)	46, 123, 354, 389, 1386, 1389, 2016, 2153
FspBI	CTAG	7 cut(s)	542, 669, 693, 702, 776, 1079, 1694
GlaI	GCGC	2 cut(s)	113, 121
GluI	GCNGC	8 cut(s)	46, 123, 354, 389, 1386, 1389, 2016, 2153
GsuI	CTGGAG	3 cut(s)	1026, 1125, 1740
HaeIII	GGCC	4 cut(s)	33, 353, 1505, 2143
HgaI	GACGC	2 cut(s)	20, 349
HhaI	GCGC	2 cut(s)	114, 122
Hin1I	GRCGYC	4 cut(s)	20, 132, 156, 360
Hin6I	GCGC	2 cut(s)	112, 120
HinP1I	GCGC	2 cut(s)	112, 120
HindIII	AAGCTT	1 cut(s)	1574
HinfI	GANTC	9 cut(s)	197, 565, 617, 722, 1108, 1286, 1311, 1344, 1658
HphI	GGTGA	5 cut(s)	274, 316, 1223, 1339, 1910
Hpy166II	GTNNAC	4 cut(s)	286, 665, 1167, 1169
Hpy8I	GTNNAC	4 cut(s)	286, 665, 1167, 1169
Hpy99I	CGWCG	9 cut(s)	11, 14, 22, 25, 134, 158, 161, 167, 365
HpyAV	CCTTC	4 cut(s)	112, 1941, 2196, 2225
HpyCH4III	ACNGT	2 cut(s)	578, 1855
HpyCH4IV	ACGT	4 cut(s)	20, 132, 156, 916
HpyF10VI	GCNNNNNNNGC	8 cut(s)	65, 512, 640, 1431, 1440, 1684, 2140, 2149
HpyF3I	CTNAG	3 cut(s)	377, 2021, 2050
HpySE526I	ACGT	4 cut(s)	20, 132, 156, 916
Hsp92I	GRCGYC	4 cut(s)	20, 132, 156, 360
HspAI	GCGC	2 cut(s)	112, 120
KroI	GCCGGC	2 cut(s)	29, 356
KroNI	GCCGGC	2 cut(s)	31, 358
Ksp22I	TGATCA	1 cut(s)	2107
Kzo9I	GATC	4 cut(s)	324, 1301, 1453, 2107
LmnI	GCTCC	7 cut(s)	130, 202, 270, 1033, 1242, 1431, 2207
Lsp1109I	GCAGC	6 cut(s)	134, 375, 1375, 1397, 2002, 2164
LweI	GCATC	6 cut(s)	319, 327, 610, 897, 1588, 1891
MaeI	CTAG	7 cut(s)	542, 669, 693, 702, 776, 1079, 1694
MaeII	ACGT	4 cut(s)	20, 132, 156, 916
MaeIII	GTNAC	4 cut(s)	70, 1015, 1976, 2171
MalI	GATC	4 cut(s)	326, 1303, 1455, 2109
MboI	GATC	4 cut(s)	324, 1301, 1453, 2107
MfeI	CAATTG	1 cut(s)	966
MflI	RGATCY	1 cut(s)	1453
MhlI	GDGCHC	2 cut(s)	288, 466
MlyI	GAGTC	2 cut(s)	716, 1320
MmeI	TCCRAC	1 cut(s)	1554
Mph1103I	ATGCAT	1 cut(s)	863
MreI	CGCCGGCG	1 cut(s)	356
MroNI	GCCGGC	2 cut(s)	29, 356
MroXI	GAANNNNTTC	1 cut(s)	1923
MseI	TTAA	9 cut(s)	657, 870, 993, 1436, 1761, 1968, 1992, 2081, 2127
MslI	CAYNNNNRTG	2 cut(s)	278, 1754
MspA1I	CMGCKG	3 cut(s)	1388, 1718, 1837
MspCI	CTTAAG	2 cut(s)	1435, 1760
MspR9I	CCNGG	7 cut(s)	80, 1074, 1341, 1362, 1540, 2145, 2205
MunI	CAATTG	1 cut(s)	966
MvaI	CCWGG	4 cut(s)	1074, 1341, 1540, 2145
MvnI	CGCG	2 cut(s)	112, 120
MwoI	GCNNNNNNNGC	8 cut(s)	65, 512, 640, 1431, 1440, 1684, 2140, 2149
NaeI	GCCGGC	2 cut(s)	31, 358
NciI	CCSGG	3 cut(s)	80, 1362, 2205
NdeI	CATATG	1 cut(s)	560
NdeII	GATC	4 cut(s)	324, 1301, 1453, 2107
NgoMIV	GCCGGC	2 cut(s)	29, 356
NlaIV	GGNNCC	2 cut(s)	87, 180
NmuCI	GTSAC	3 cut(s)	70, 1015, 2171
NsiI	ATGCAT	1 cut(s)	863
NspI	RCATGY	1 cut(s)	2138
PaeR7I	CTCGAG	1 cut(s)	1516
PagI	TCATGA	1 cut(s)	646
PceI	AGGCCT	1 cut(s)	2143
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 162
PdiI	GCCGGC	2 cut(s)	31, 358
PdmI	GAANNNNTTC	1 cut(s)	1923
PfeI	GAWTC	7 cut(s)	197, 565, 617, 1108, 1286, 1344, 1658
PfoI	TCCNGGA	1 cut(s)	1339
PkrI	GCNGC	8 cut(s)	47, 124, 355, 390, 1387, 1390, 2017, 2154
PleI	GAGTC	2 cut(s)	716, 1319
PpsI	GAGTC	2 cut(s)	716, 1319
PshAI	GACNNNNGTC	1 cut(s)	1257
Psp6I	CCWGG	4 cut(s)	1072, 1339, 1538, 2143
PspGI	CCWGG	4 cut(s)	1072, 1339, 1538, 2143
PspN4I	GGNNCC	2 cut(s)	87, 180
PspPI	GGNCC	2 cut(s)	85, 796
PspXI	VCTCGAGB	1 cut(s)	1516
PstNI	CAGNNNCTG	1 cut(s)	1388
PsuI	RGATCY	1 cut(s)	1453
PvuII	CAGCTG	3 cut(s)	1388, 1718, 1837
RsaI	GTAC	3 cut(s)	1152, 1168, 1613
RsaNI	GTAC	3 cut(s)	1151, 1167, 1612
RseI	CAYNNNNRTG	2 cut(s)	278, 1754
SaqAI	TTAA	9 cut(s)	657, 870, 993, 1436, 1761, 1968, 1992, 2081, 2127
SatI	GCNGC	8 cut(s)	46, 123, 354, 389, 1386, 1389, 2016, 2153
Sau3AI	GATC	4 cut(s)	324, 1301, 1453, 2107
Sau96I	GGNCC	2 cut(s)	85, 796
SchI	GAGTC	2 cut(s)	716, 1320
ScrFI	CCNGG	7 cut(s)	80, 1074, 1341, 1362, 1540, 2145, 2205
SduI	GDGCHC	2 cut(s)	288, 466
SfaNI	GCATC	6 cut(s)	319, 327, 610, 897, 1588, 1891
Sfr274I	CTCGAG	1 cut(s)	1516
SgrAI	CRCCGGYG	2 cut(s)	175, 356
SinI	GGWCC	2 cut(s)	85, 796
SlaI	CTCGAG	1 cut(s)	1516
SmiMI	CAYNNNNRTG	2 cut(s)	278, 1754
SmlI	CTYRAG	4 cut(s)	478, 1435, 1516, 1760
SmoI	CTYRAG	4 cut(s)	478, 1435, 1516, 1760
SseBI	AGGCCT	1 cut(s)	2143
SsiI	CCGC	6 cut(s)	45, 83, 118, 354, 1570, 2059
SspMI	CTAG	7 cut(s)	542, 669, 693, 702, 776, 1079, 1694
StuI	AGGCCT	1 cut(s)	2143
StyD4I	CCNGG	7 cut(s)	78, 1072, 1339, 1360, 1538, 2143, 2203
StyI	CCWWGG	2 cut(s)	837, 1707
TaaI	ACNGT	2 cut(s)	578, 1855
TaiI	ACGT	4 cut(s)	23, 135, 159, 919
TaqI	TCGA	3 cut(s)	327, 472, 1517
TatI	WGTACW	2 cut(s)	1166, 1611
TauI	GCSGC	2 cut(s)	48, 356
TfiI	GAWTC	7 cut(s)	197, 565, 617, 1108, 1286, 1344, 1658
Tru1I	TTAA	9 cut(s)	657, 870, 993, 1436, 1761, 1968, 1992, 2081, 2127
Tru9I	TTAA	9 cut(s)	657, 870, 993, 1436, 1761, 1968, 1992, 2081, 2127
TscAI	CASTG	8 cut(s)	619, 1024, 1045, 1110, 1413, 1553, 2058, 2117
TseFI	GTSAC	3 cut(s)	70, 1015, 2171
TseI	GCWGC	6 cut(s)	122, 388, 1385, 1388, 2015, 2152
Tsp45I	GTSAC	3 cut(s)	70, 1015, 2171
TspDTI	ATGAA	9 cut(s)	323, 635, 663, 878, 1037, 1083, 1344, 1631, 1738
TspGWI	ACGGA	1 cut(s)	1899
TspRI	CASTG	8 cut(s)	619, 1024, 1045, 1110, 1413, 1553, 2058, 2117
Vha464I	CTTAAG	2 cut(s)	1435, 1760
VneI	GTGCAC	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	85, 796
XagI	CCTNNNNNAGG	1 cut(s)	1077
XapI	RAATTY	6 cut(s)	651, 1335, 1618, 1783, 2098, 2157
XceI	RCATGY	1 cut(s)	2138
XhoI	CTCGAG	1 cut(s)	1516
XmnI	GAANNNNTTC	1 cut(s)	1923
XspI	CTAG	7 cut(s)	542, 669, 693, 702, 776, 1079, 1694
ZraI	GACGTC	3 cut(s)	21, 133, 157
Zsp2I	ATGCAT	1 cut(s)	863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.