Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009424

Physical Location & Seq

Genomic Coordinates Forward (+)

9829804 .. 9831398

Gene Structure 1595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031960

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAGGATGAGGAAGAGGAGTATAGGGCAGGTGAATGGGAGCATAAGCGTGGCGCACCAGCTTCATGCTTTGGTTATGAACAAGTGCATCAAGATGTTATTGGTTCCGGTTGAGCCTGCCGGCGTCAGTGGACAACTCAGGGCTGTGCTGCTTGCTGATGTCTATCTTCCGATTGAGTTATGGTGTGGTTGGCAGTTTCCAAAATTAGGGTCTATTGCCGGTGCTTTGTTTCCACACTTGAGTCATATCCAAGTAGTCAGCAACACAAATGAGCTGTATAACATTTTGACTGCAAATTTGAATATCAAAGCCATGATAGAATCTCTCAACAAGCTTAAGAGTGTCTGCAGTAGCAGGGACACTTTGGAGGAAGTTAGCAAGATCTTCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Helicase_C SNF2_N zf-CW

Protein Analysis

131

Amino Acids

14.38

Weight (kDa)

9.37

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54460 AT3G54460
fragaria_vesca	FvH4_7g02950 FvH4_7g02950 FvH4_7g02950
malus_domestica	MD02G1288500.v1.1 MD07G1038300.v1.1
prunus_persica	Prupe.2G034500_v2.0.a1 Prupe.2G034500_v2.0.a1
pyrus_communis	pycom07g02660
rosa_chinensis	RchiOBHm_Chr1g0323901
rosa_laevigata	RLG00000030243 RLG00000031960
rosa_multiflora	Rmu_sc0001449.1_g000002 Rmu_sc0012343.1_g000008
rosa_roxburghii	Rroxscaffold_4G00326120
rosa_rugosa	Rorug01G0040500.1
rosa_samantha	Rh1CG059700 Rh1CG060300 Rh1DG063700 Rh1DG064300
rosa_wichuraiana	Rw0G011390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	19
Acc36I	ACCTGC	1 cut(s)	19
AcsI	RAATTY	1 cut(s)	295
AcyI	GRCGYC	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	206
AflII	CTTAAG	1 cut(s)	335
AgsI	TTSAA	1 cut(s)	301
AluBI	AGCT	3 cut(s)	61, 274, 334
AluI	AGCT	3 cut(s)	61, 274, 334
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	295
ArsI	GACNNNNNNTTYG	4 cut(s)	194, 226, 280, 312
AspLEI	GCGC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	135
BfmI	CTRYAG	2 cut(s)	346, 389
BfrI	CTTAAG	1 cut(s)	335
BfuAI	ACCTGC	1 cut(s)	19
BglII	AGATCT	1 cut(s)	381
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
BmiI	GGNNCC	1 cut(s)	105
BmsI	GCATC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	259
BsaBI	GATNNNNATC	1 cut(s)	162
BsaHI	GRCGYC	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse118I	RCCGGY	2 cut(s)	119, 218
Bse8I	GATNNNNATC	1 cut(s)	162
BseGI	GGATG	1 cut(s)	12
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	135
BsiSI	CCGG	3 cut(s)	107, 120, 219
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	371
Bsp143I	GATC	1 cut(s)	381
BspCNI	CTCAG	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	350
BspMI	ACCTGC	1 cut(s)	19
BspTI	CTTAAG	1 cut(s)	335
BsrFI	RCCGGY	2 cut(s)	119, 218
BssAI	RCCGGY	2 cut(s)	119, 218
BssMI	GATC	1 cut(s)	381
BssNI	GRCGYC	1 cut(s)	123
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	1 cut(s)	123
BstAFI	CTTAAG	1 cut(s)	335
BstC8I	GCNNGC	3 cut(s)	117, 121, 153
BstDEI	CTNAG	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	1 cut(s)	384
BstMBI	GATC	1 cut(s)	381
BstSFI	CTRYAG	2 cut(s)	346, 389
BstV1I	GCAGC	1 cut(s)	135
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	133
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	3 cut(s)	117, 121, 153
CfoI	GCGC	1 cut(s)	55
Cfr10I	RCCGGY	2 cut(s)	119, 218
CseI	GACGC	1 cut(s)	112
CviAII	CATG	2 cut(s)	65, 313
CviJI	RGCY	6 cut(s)	61, 115, 143, 274, 311, 334
CviKI_1	RGCY	6 cut(s)	61, 115, 143, 274, 311, 334
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
FaeI	CATG	2 cut(s)	68, 316
FaiI	YATR	8 cut(s)	23, 44, 66, 77, 181, 246, 279, 314
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	2 cut(s)	64, 312
Fnu4HI	GCNGC	1 cut(s)	149
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	149
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	149
HapII	CCGG	3 cut(s)	107, 120, 219
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	1 cut(s)	55
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	68, 316
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	2 cut(s)	241, 320
HpaII	CCGG	3 cut(s)	107, 120, 219
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	131
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	1 cut(s)	131
HpyCH4V	TGCA	3 cut(s)	87, 293, 348
HpyF3I	CTNAG	1 cut(s)	137
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	68, 316
HspAI	GCGC	1 cut(s)	53
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	381
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	8 cut(s)	14, 71, 120, 124, 129, 133, 232, 340
Lsp1109I	GCAGC	1 cut(s)	135
LweI	GCATC	1 cut(s)	96
MalI	GATC	1 cut(s)	383
MboI	GATC	1 cut(s)	381
MboII	GAAGA	3 cut(s)	25, 158, 376
MflI	RGATCY	1 cut(s)	381
MluCI	AATT	2 cut(s)	203, 295
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	3 cut(s)	3, 9, 361
MroNI	GCCGGC	1 cut(s)	119
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	2 cut(s)	47, 92
MspCI	CTTAAG	1 cut(s)	335
MspI	CCGG	3 cut(s)	107, 120, 219
NaeI	GCCGGC	1 cut(s)	121
NdeII	GATC	1 cut(s)	381
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	2 cut(s)	68, 316
NlaIV	GGNNCC	1 cut(s)	105
PaqCI	CACCTGC	1 cut(s)	19
PdiI	GCCGGC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	150
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	381
RseI	CAYNNNNRTG	2 cut(s)	47, 92
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	1 cut(s)	381
SchI	GAGTC	1 cut(s)	250
SetI	ASST	4 cut(s)	33, 63, 276, 336
SfaNI	GCATC	1 cut(s)	96
SfcI	CTRYAG	2 cut(s)	346, 389
SmiMI	CAYNNNNRTG	2 cut(s)	47, 92
SmlI	CTYRAG	2 cut(s)	238, 335
SmoI	CTYRAG	2 cut(s)	238, 335
Sse9I	AATT	2 cut(s)	203, 295
TasI	AATT	2 cut(s)	203, 295
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	53, 92
TspRI	CASTG	1 cut(s)	133
Vha464I	CTTAAG	1 cut(s)	335
XapI	RAATTY	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.