Rmu_sc0001449.1_g000002

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001449.1
OG0009424
Physical Location & Seq
Reverse (-)
6149 .. 8685
2537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001449.1_g000002.1.cds

Sequence Viewer

Length: 1110 bp
atggacgacgacgcaacgacgtcgttcgctgaccacaagctctgcggcttcctctacgccgtcctcgccgtcacttccccggcggacccacccgacctccccttcggaacgcgcttccgcgcagctcccgacgtcagtttcaaatcccaaaacgacgacgccgtcgtcctctcgccggtgccggaaaactcctctgattcggagcaatgcgagggggaattggggaggaagacgaggacgaggaagaggagcatagggctggtgaatgggagcataagcgtggtgcaccagcttcacgctttggtgatgaacaagtgtatcaagatcgatgctttgttggttcgggtcgaggccgccggcgtcggtgggcaacaactcagggctgtgctgctggttgatgtctatcttccgattgagttatggtgtggttggcagtttccgaaatcgcgtttatcacccgacctccccttcggaacgcgcttccgcgcagctcccgacgtcagtttcaaatcccaaaacgacgacgccgtcgtcctatcgccggtgccggaaaactcctctgattcggagcaatgcgagggggaattggggaggaagacgaggacgaggaagaggagtatagggctggtgaatgggagcataagcgtggtgcaccagcttcacgctttggtgatgaacaagtgcatcaagatcgatgctttgttggttcgggttgaggccgccggcgtcggtgggcaacaactcagggctgtgctgctggttgatgtctatcttccgatcgagttatggtgtggttggcagtttccgaaatcgcggtccattgccggtgctctgtttcgacacttgagttatgactggggggagagaagtgcaatgctggctgacaaggattatcttgaaaataatctaggaggtcgcagaaacatatggaatctttctgactgtcatgtttttggttgcaaactgcatcataatttcactgattcttcaaagaagaagctatttgagcttcatgaaatttttaagagtttacctagtataagcttcgtttcattgacattttgtgtctgcatggatatgtatattggtccctttcttccctggcattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like Helicase_C SNF2_N zf-CW

Protein Analysis

369

Amino Acids

40.97

Weight (kDa)

7.14

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
Image
Tree File
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 4 cut(s) 161, 164, 527, 530
AatII GACGTC 3 cut(s) 23, 135, 501
AccB1I GGYRCC 2 cut(s) 178, 544
AccII CGCG 6 cut(s) 112, 120, 448, 478, 486, 814
AciI CCGC 7 cut(s) 45, 83, 118, 354, 484, 720, 814
AcsI RAATTY 1 cut(s) 1017
AcyI GRCGYC 7 cut(s) 20, 132, 159, 360, 498, 525, 726
AfiI CCNNNNNNNGG 2 cut(s) 175, 541
AgsI TTSAA 4 cut(s) 142, 508, 899, 990
AjnI CCWGG 1 cut(s) 1100
AluBI AGCT 8 cut(s) 40, 125, 292, 491, 658, 1000, 1009, 1044
AluI AGCT 8 cut(s) 40, 125, 292, 491, 658, 1000, 1009, 1044
Alw21I GWGCWC 3 cut(s) 288, 654, 832
Alw44I GTGCAC 2 cut(s) 284, 650
AoxI GGCC 2 cut(s) 351, 717
ApaLI GTGCAC 2 cut(s) 284, 650
ApeKI GCWGC 4 cut(s) 122, 388, 488, 754
ApoI RAATTY 1 cut(s) 1017
ArsI GACNNNNNNTTYG 6 cut(s) 86, 118, 452, 484, 800, 832
AspLEI GCGC 4 cut(s) 114, 122, 480, 488
AspS9I GGNCC 3 cut(s) 85, 816, 1088
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 5 cut(s) 274, 316, 447, 640, 682
AvaII GGWCC 3 cut(s) 85, 816, 1088
BaeGI GKGCMC 2 cut(s) 288, 654
BaeI ACNNNNGTAYC 2 cut(s) 301, 334
BanI GGYRCC 2 cut(s) 178, 544
BbsI GAAGAC 2 cut(s) 236, 602
Bbv12I GWGCWC 3 cut(s) 288, 654, 832
BbvI GCAGC 4 cut(s) 134, 375, 500, 741
BceAI ACGGC 4 cut(s) 44, 53, 146, 512
BcgI CGANNNNNNTGC 3 cut(s) 37, 673, 707
BciT130I CCWGG 1 cut(s) 1102
BcnI CCSGG 1 cut(s) 80
BfaI CTAG 2 cut(s) 908, 1035
BisI GCNGC 7 cut(s) 46, 123, 354, 389, 489, 720, 755
BlsI GCNGC 7 cut(s) 47, 124, 355, 390, 490, 721, 756
Bme1390I CCNGG 2 cut(s) 80, 1102
Bme18I GGWCC 3 cut(s) 85, 816, 1088
BmgT120I GGNCC 3 cut(s) 85, 816, 1088
BmiI GGNNCC 4 cut(s) 87, 180, 546, 1090
BmrFI CCNGG 2 cut(s) 80, 1102
BmrI ACTGGG 1 cut(s) 865
BmsI GCATC 4 cut(s) 319, 685, 693, 976
BmuI ACTGGG 1 cut(s) 865
BpiI GAAGAC 2 cut(s) 236, 602
BpuEI CTTGAG 1 cut(s) 865
BpuMI CCSGG 1 cut(s) 80
Bsa29I ATCGAT 2 cut(s) 327, 693
BsaBI GATNNNNATC 2 cut(s) 402, 768
BsaHI GRCGYC 7 cut(s) 20, 132, 159, 360, 498, 525, 726
BsaJI CCNNGG 2 cut(s) 78, 1100
BsaXI ACNNNNNCTCC 4 cut(s) 81, 111, 447, 477
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 541
Bse118I RCCGGY 5 cut(s) 175, 356, 541, 722, 824
Bse1I ACTGG 1 cut(s) 860
Bse3DI GCAATG 4 cut(s) 212, 578, 819, 879
Bse8I GATNNNNATC 2 cut(s) 402, 768
BseBI CCWGG 1 cut(s) 1102
BseCI ATCGAT 2 cut(s) 327, 693
BseDI CCNNGG 2 cut(s) 78, 1100
BseJI GATNNNNATC 2 cut(s) 402, 768
BseLI CCNNNNNNNGG 2 cut(s) 175, 541
BseMI GCAATG 4 cut(s) 212, 578, 819, 879
BseMII CTCAG 2 cut(s) 391, 757
BseNI ACTGG 1 cut(s) 860
BseRI GAGGAG 4 cut(s) 181, 262, 547, 628
BseSI GKGCMC 2 cut(s) 288, 654
BseXI GCAGC 4 cut(s) 134, 375, 500, 741
Bsh1236I CGCG 6 cut(s) 112, 120, 448, 478, 486, 814
Bsh1285I CGRYCG 1 cut(s) 780
BshFI GGCC 2 cut(s) 353, 719
BshNI GGYRCC 2 cut(s) 178, 544
BshVI ATCGAT 2 cut(s) 327, 693
BsiEI CGRYCG 1 cut(s) 780
BsiHKAI GWGCWC 3 cut(s) 288, 654, 832
BsiSI CCGG 8 cut(s) 80, 176, 182, 357, 542, 548, 723, 825
BslFI GGGAC 1 cut(s) 1074
BslI CCNNNNNNNGG 2 cut(s) 175, 541
BsmFI GGGAC 1 cut(s) 1074
BsnI GGCC 2 cut(s) 353, 719
Bsp1286I GDGCHC 3 cut(s) 288, 654, 832
Bsp143I GATC 3 cut(s) 324, 690, 777
BspACI CCGC 7 cut(s) 45, 83, 118, 354, 484, 720, 814
BspANI GGCC 2 cut(s) 353, 719
BspCNI CTCAG 2 cut(s) 390, 756
BspDI ATCGAT 2 cut(s) 327, 693
BspFNI CGCG 6 cut(s) 112, 120, 448, 478, 486, 814
BspHI TCATGA 1 cut(s) 1012
BspLI GGNNCC 4 cut(s) 87, 180, 546, 1090
BspT107I GGYRCC 2 cut(s) 178, 544
BsrDI GCAATG 4 cut(s) 212, 578, 819, 879
BsrFI RCCGGY 5 cut(s) 175, 356, 541, 722, 824
BsrI ACTGG 1 cut(s) 860
BssAI RCCGGY 5 cut(s) 175, 356, 541, 722, 824
BssECI CCNNGG 2 cut(s) 78, 1100
BssMI GATC 3 cut(s) 324, 690, 777
BssNI GRCGYC 7 cut(s) 20, 132, 159, 360, 498, 525, 726
Bst2UI CCWGG 1 cut(s) 1102
Bst4CI ACNGT 1 cut(s) 944
Bst6I CTCTTC 2 cut(s) 239, 605
BstACI GRCGYC 7 cut(s) 20, 132, 159, 360, 498, 525, 726
BstC8I GCNNGC 3 cut(s) 358, 724, 879
BstDEI CTNAG 2 cut(s) 377, 743
BstFNI CGCG 6 cut(s) 112, 120, 448, 478, 486, 814
BstHHI GCGC 4 cut(s) 114, 122, 480, 488
BstKTI GATC 3 cut(s) 327, 693, 780
BstMBI GATC 3 cut(s) 324, 690, 777
BstMCI CGRYCG 1 cut(s) 780
BstMWI GCNNNNNNNGC 3 cut(s) 65, 878, 1006
BstNI CCWGG 1 cut(s) 1102
BstSCI CCNGG 2 cut(s) 78, 1100
BstSLI GKGCMC 2 cut(s) 288, 654
BstUI CGCG 6 cut(s) 112, 120, 448, 478, 486, 814
BstV1I GCAGC 4 cut(s) 134, 375, 500, 741
BstV2I GAAGAC 2 cut(s) 236, 602
Bsu15I ATCGAT 2 cut(s) 327, 693
BsuRI GGCC 2 cut(s) 353, 719
BsuTUI ATCGAT 2 cut(s) 327, 693
BtsIMutI CAGTG 1 cut(s) 978
Cac8I GCNNGC 3 cut(s) 358, 724, 879
CciI TCATGA 1 cut(s) 1012
CfoI GCGC 4 cut(s) 114, 122, 480, 488
Cfr10I RCCGGY 5 cut(s) 175, 356, 541, 722, 824
Cfr13I GGNCC 3 cut(s) 85, 816, 1088
ClaI ATCGAT 2 cut(s) 327, 693
CseI GACGC 5 cut(s) 20, 167, 349, 533, 715
CviAII CATG 3 cut(s) 947, 1013, 1072
DdeI CTNAG 2 cut(s) 377, 743
DpnI GATC 3 cut(s) 326, 692, 779
DpnII GATC 3 cut(s) 324, 690, 777
DrdI GACNNNNNNGTC 4 cut(s) 161, 164, 527, 530
DseDI GACNNNNNNGTC 4 cut(s) 161, 164, 527, 530
Eam1104I CTCTTC 2 cut(s) 239, 605
EarI CTCTTC 2 cut(s) 239, 605
EciI GGCGGA 1 cut(s) 98
Eco47I GGWCC 3 cut(s) 85, 816, 1088
EcoRII CCWGG 1 cut(s) 1100
FaeI CATG 3 cut(s) 950, 1016, 1075
FaqI GGGAC 1 cut(s) 1074
FatI CATG 3 cut(s) 946, 1012, 1071
FauNDI CATATG 1 cut(s) 926
Fnu4HI GCNGC 7 cut(s) 46, 123, 354, 389, 489, 720, 755
Fsp4HI GCNGC 7 cut(s) 46, 123, 354, 389, 489, 720, 755
FspBI CTAG 2 cut(s) 908, 1035
GlaI GCGC 4 cut(s) 113, 121, 479, 487
GluI GCNGC 7 cut(s) 46, 123, 354, 389, 489, 720, 755
HaeIII GGCC 2 cut(s) 353, 719
HapII CCGG 8 cut(s) 80, 176, 182, 357, 542, 548, 723, 825
HgaI GACGC 5 cut(s) 20, 167, 349, 533, 715
HhaI GCGC 4 cut(s) 114, 122, 480, 488
Hin1I GRCGYC 7 cut(s) 20, 132, 159, 360, 498, 525, 726
Hin1II CATG 3 cut(s) 950, 1016, 1075
Hin6I GCGC 4 cut(s) 112, 120, 478, 486
HinP1I GCGC 4 cut(s) 112, 120, 478, 486
HindIII AAGCTT 1 cut(s) 1042
HinfI GANTC 4 cut(s) 197, 563, 931, 983
HpaII CCGG 8 cut(s) 80, 176, 182, 357, 542, 548, 723, 825
HphI GGTGA 5 cut(s) 274, 316, 447, 640, 682
Hpy166II GTNNAC 3 cut(s) 286, 652, 1031
Hpy188III TCNNGA 6 cut(s) 128, 322, 494, 688, 896, 1013
Hpy8I GTNNAC 3 cut(s) 286, 652, 1031
HpyAV CCTTC 2 cut(s) 112, 478
HpyCH4III ACNGT 1 cut(s) 944
HpyCH4IV ACGT 3 cut(s) 20, 132, 498
HpyCH4V TGCA 7 cut(s) 286, 652, 684, 872, 960, 967, 1071
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 878, 1006
HpyF3I CTNAG 2 cut(s) 377, 743
HpySE526I ACGT 3 cut(s) 20, 132, 498
Hsp92I GRCGYC 7 cut(s) 20, 132, 159, 360, 498, 525, 726
Hsp92II CATG 3 cut(s) 950, 1016, 1075
HspAI GCGC 4 cut(s) 112, 120, 478, 486
KroI GCCGGC 2 cut(s) 356, 722
KroNI GCCGGC 2 cut(s) 358, 724
Kzo9I GATC 3 cut(s) 324, 690, 777
LmnI GCTCC 7 cut(s) 130, 202, 249, 270, 496, 568, 636
Lsp1109I GCAGC 4 cut(s) 134, 375, 500, 741
LweI GCATC 4 cut(s) 319, 685, 693, 976
MaeI CTAG 2 cut(s) 908, 1035
MaeII ACGT 3 cut(s) 20, 132, 498
MaeIII GTNAC 1 cut(s) 70
MalI GATC 3 cut(s) 326, 692, 779
MboI GATC 3 cut(s) 324, 690, 777
MboII GAAGA 9 cut(s) 241, 256, 398, 607, 622, 764, 978, 1006, 1088
MhlI GDGCHC 3 cut(s) 288, 654, 832
MluCI AATT 4 cut(s) 218, 584, 973, 1017
MreI CGCCGGCG 2 cut(s) 356, 722
MroNI GCCGGC 2 cut(s) 356, 722
MseI TTAA 2 cut(s) 1023, 1108
MslI CAYNNNNRTG 3 cut(s) 278, 644, 1076
MspI CCGG 8 cut(s) 80, 176, 182, 357, 542, 548, 723, 825
MspR9I CCNGG 2 cut(s) 80, 1102
MvaI CCWGG 1 cut(s) 1102
MvnI CGCG 6 cut(s) 112, 120, 448, 478, 486, 814
MwoI GCNNNNNNNGC 3 cut(s) 65, 878, 1006
NaeI GCCGGC 2 cut(s) 358, 724
NciI CCSGG 1 cut(s) 80
NdeI CATATG 1 cut(s) 926
NdeII GATC 3 cut(s) 324, 690, 777
NgoMIV GCCGGC 2 cut(s) 356, 722
NlaIII CATG 3 cut(s) 950, 1016, 1075
NlaIV GGNNCC 4 cut(s) 87, 180, 546, 1090
NmuCI GTSAC 1 cut(s) 70
PagI TCATGA 1 cut(s) 1012
PcsI WCGNNNNNNNCGW 4 cut(s) 159, 162, 525, 528
PdiI GCCGGC 2 cut(s) 358, 724
PfeI GAWTC 4 cut(s) 197, 563, 931, 983
PflFI GACNNNGTC 2 cut(s) 161, 527
PkrI GCNGC 7 cut(s) 47, 124, 355, 390, 490, 721, 756
Ple19I CGATCG 1 cut(s) 780
Psp6I CCWGG 1 cut(s) 1100
PspGI CCWGG 1 cut(s) 1100
PspN4I GGNNCC 4 cut(s) 87, 180, 546, 1090
PspPI GGNCC 3 cut(s) 85, 816, 1088
PsyI GACNNNGTC 2 cut(s) 161, 527
PvuI CGATCG 1 cut(s) 780
RseI CAYNNNNRTG 3 cut(s) 278, 644, 1076
SaqAI TTAA 2 cut(s) 1023, 1108
SatI GCNGC 7 cut(s) 46, 123, 354, 389, 489, 720, 755
Sau3AI GATC 3 cut(s) 324, 690, 777
Sau96I GGNCC 3 cut(s) 85, 816, 1088
ScrFI CCNGG 2 cut(s) 80, 1102
SduI GDGCHC 3 cut(s) 288, 654, 832
SfaNI GCATC 4 cut(s) 319, 685, 693, 976
SgrAI CRCCGGYG 4 cut(s) 175, 356, 541, 722
SinI GGWCC 3 cut(s) 85, 816, 1088
SmiMI CAYNNNNRTG 3 cut(s) 278, 644, 1076
SmlI CTYRAG 1 cut(s) 844
SmoI CTYRAG 1 cut(s) 844
Sse9I AATT 4 cut(s) 218, 584, 973, 1017
SsiI CCGC 7 cut(s) 45, 83, 118, 354, 484, 720, 814
SspMI CTAG 2 cut(s) 908, 1035
StyD4I CCNGG 2 cut(s) 78, 1100
TaaI ACNGT 1 cut(s) 944
TaiI ACGT 3 cut(s) 23, 135, 501
TaqI TCGA 5 cut(s) 327, 348, 693, 780, 838
TasI AATT 4 cut(s) 218, 584, 973, 1017
TauI GCSGC 3 cut(s) 48, 356, 722
TfiI GAWTC 4 cut(s) 197, 563, 931, 983
Tru1I TTAA 2 cut(s) 1023, 1108
Tru9I TTAA 2 cut(s) 1023, 1108
TscAI CASTG 1 cut(s) 985
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 4 cut(s) 122, 388, 488, 754
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 5 cut(s) 323, 689, 1001, 1029, 1041
TspRI CASTG 1 cut(s) 985
Tth111I GACNNNGTC 2 cut(s) 161, 527
VneI GTGCAC 2 cut(s) 284, 650
VpaK11BI GGWCC 3 cut(s) 85, 816, 1088
XapI RAATTY 1 cut(s) 1017
XspI CTAG 2 cut(s) 908, 1035
ZraI GACGTC 3 cut(s) 21, 133, 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.